Gene

KWMTBOMO12612

Annotation

PREDICTED:_methyl-CpG-binding_domain_protein_3_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr21(-):9260486-9264239      View in EpiBrowser

Transcription factor

MBD

Location in the cell

Mitochondrial   Reliability : 2.567

CDS

ATGAACATATCTATCGAAAGAAAACGATCCGATTGTTCAGCGTTACCCAAAGGCTGGCAAAGAGAGGAAGTAGTTAGAAAAACAGGTCTGTCGGCAGGGAAGGTTGATGTTTATTATTACAGGGGTGTACGTAATGATGCTTCATTAGTGCCACCAATTCGTCAAACAGCATCAATATTCAAACAGCCTGTGACGGTCTACAAAACTCAAGACAGTAAAGTTAAAACAGATCTCAAGCATGGGACACAGGAAAAGCCTAAACAATTATTTTGGGAAAAAAGACTAGAGGGATTGACAGCTTGTGATGCAAATGGTGTAATTGGAACTACAAGTCTACCAAAATACATCAAATCCTTGGGACCATACACTTCTGATGCCACCACTATCCAGTCATTGGCTACAGCACTTCATGTATCTTCACAACCTATAACTGGACAAATAGGATCGAAACAAGCCATAAAAGACAATCCAGGTGTTTTTTTAAACCCAGAACAACCCCTGATTGCTGCAGTGACAATCACTAAGGAAGATGTGCGACGCCAAGAGGAGCGCGTGAAGCGAGCTCGCCAGCGATTGCGACAAGCTCTATCGGTGGCCTAG

Protein

MNISIERKRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLRQALSVA

Uniprot

H9IVZ4   S4P4C9   A0A437AZI5   A0A2A4J970   A0A194Q2D3   A0A212ERK3   + More
A0A1E1WJW8   A0A194RD56   A0A2A4J8N7   A0A2H1W0H3   A0A1B6BY16   A0A1B6M9B3   D6WEM7   Q17MF7   A0A0K8TM56   B0WJR3   A0A1Y1K0J1   A0A347ZJC5   A0A023EJF6   A0A146LQ99   A0A1E1WTI8   A0A067RKE5   A0A2J7PHQ3   A0A1B6D9Z9   A0A1Q3F3C7   A0A1W4WI29   A0A2M4CHJ3   A0A2M4CHY6   A0A1B6EXT5   A0A1B6MJK8   A0A1B6JU75   A0A0T6BCW3   Q7PJP8   A0A2M4C132   A0A2M3ZDK9   A0A2M4AY77   A0A0A9X6D1   T1DQ22   U5EQR4   A0A158NEN6   K7IVW4   A0A0C9R3N0   E0VRJ1   A0A1I8QEX3   A0A0L7RFE3   A0A0A9Z655   T1JMF5   A0A023FAH0   A0A310SM96   A0A069DRK8   A0A423TIY8   A0A087ZRU7   R4G3U4   A0A195FKQ4   A0A154PBQ4   J3JWE2   A0A151XIY4   A0A195BWJ1   A0A158NEN5   E9IJB3   F4WRR4   A0A1I8N258   A0A444TTX2   A0A195DZL7   A0A232ER39   A0A0C9QUG5   A0A195CSQ0   A0A3Q8VL54   A0A026WWB4   W8C775   V5HJF9   B7Q0K4   A0A226F4J4   G3MQS7   A0A0C9SBS9   A0A023GH29   A0A2R5L419   A0A293LHP0   A0A224YTB4   A0A131Z3U2   A0A131X9C1   A0A034WUG7   A0A0Q9XAK3   A0A1E1XC02   A0A224XIQ8   A0A0A1XB44   A0A0K8V815   L7M5F6   A0A2J7PHQ4   A0A0J7L7W8   A0A0Q9W241   A0A3Q0IS92   E2AQ93   A0A087UA68   A0A1J1HZA5   E2B3C1   A0A0M3QY13   A0A1S3H6V1   A0A1L8DI16   A0A0P4VV78  

Pubmed

19121390    23622113    26354079    22118469    18362917    19820115    + More
17510324    26369729    28004739    24945155    26823975    24845553    12364791    14747013    17210077    25401762    21347285    20075255    20566863    25474469    26334808    22516182    21282665    21719571    25315136    28648823    24508170    30249741    24495485    25765539    22216098    26131772    28797301    26830274    28049606    25348373    17994087    28503490    25830018    25576852    20798317    27129103   

EMBL

BABH01006350    GAIX01006029    JAA86531.1    RSAL01000244    RVE43597.1    NWSH01002469    + More
PCG68228.1    KQ459564    KPI99701.1    AGBW02012992    OWR44128.1    GDQN01008204    GDQN01003836    JAT82850.1    JAT87218.1    KQ460325    KPJ15768.1    PCG68229.1    ODYU01005449    SOQ46322.1    GEDC01031354    JAS05944.1    GEBQ01007469    JAT32508.1    KQ971326    EFA00872.1    CH477206    EAT47881.1    GDAI01002156    JAI15447.1    DS231963    EDS29406.1    GEZM01100655    JAV52826.1    FX985693    BBA84431.1    GAPW01004513    JAC09085.1    GDHC01009687    JAQ08942.1    GDQN01000770    JAT90284.1    KK852460    KDR23493.1    NEVH01025133    PNF15867.1    GEDC01014848    JAS22450.1    GFDL01012973    JAV22072.1    GGFL01000595    MBW64773.1    GGFL01000593    MBW64771.1    GECZ01026991    JAS42778.1    GEBQ01003827    JAT36150.1    GECU01007947    GECU01004938    GECU01003719    GECU01000271    JAS99759.1    JAT02769.1    JAT03988.1    JAT07436.1    LJIG01002197    KRT84743.1    AAAB01008978    EAA43676.4    GGFJ01009557    MBW58698.1    GGFM01005822    MBW26573.1    GGFK01012409    MBW45730.1    GBHO01028408    JAG15196.1    GAMD01001455    JAB00136.1    GANO01004106    JAB55765.1    ADTU01013577    GBYB01007402    JAG77169.1    DS235478    EEB15997.1    KQ414606    KOC69548.1    GBHO01004776    GBRD01004041    GDHC01012724    JAG38828.1    JAG61780.1    JAQ05905.1    JH432114    GBBI01000708    JAC18004.1    KQ762461    OAD55852.1    GBGD01002612    JAC86277.1    QCYY01001664    ROT76418.1    ACPB03003214    ACPB03003215    GAHY01001915    JAA75595.1    KQ981490    KYN41245.1    KQ434869    KZC09281.1    BT127560    AEE62522.1    KQ982080    KYQ60275.1    KQ976401    KYM92331.1    GL763764    EFZ19332.1    GL888292    EGI63071.1    SAUD01000373    RXG73429.1    KQ979999    KYN18276.1    NNAY01002675    OXU20801.1    GBYB01007404    JAG77171.1    KQ977381    KYN03139.1    MH107033    AZM65488.1    KK107078    QOIP01000011    EZA60337.1    RLU16487.1    GAMC01000712    JAC05844.1    GANP01006719    JAB77749.1    ABJB010377280    ABJB010604421    ABJB010695620    DS833022    EEC12376.1    LNIX01000001    OXA64699.1    JO844228    AEO35845.1    GBZX01001788    JAG90952.1    GBBM01002239    JAC33179.1    GGLE01000097    MBY04223.1    GFWV01008278    MAA33007.1    GFPF01009701    MAA20847.1    GEDV01003095    JAP85462.1    GEFH01004427    JAP64154.1    GAKP01000965    JAC57987.1    CH933806    KRG00867.1    GFAC01002403    JAT96785.1    GFTR01004050    JAW12376.1    GBXI01006091    JAD08201.1    GDHF01017230    GDHF01005541    JAI35084.1    JAI46773.1    GACK01005759    JAA59275.1    PNF15866.1    LBMM01000244    KMR03208.1    CH940652    KRF78886.1    GL441701    EFN64427.1    KK118950    KFM74257.1    CVRI01000021    CRK91878.1    GL445323    EFN89799.1    CP012526    ALC46873.1    GFDF01008084    JAV06000.1    GDKW01003069    JAI53526.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000007151    UP000053240    + More
UP000007266    UP000008820    UP000002320    UP000027135    UP000235965    UP000192223    UP000007062    UP000005205    UP000002358    UP000009046    UP000095300    UP000053825    UP000283509    UP000005203    UP000015103    UP000078541    UP000076502    UP000075809    UP000078540    UP000007755    UP000095301    UP000288706    UP000078492    UP000215335    UP000078542    UP000053097    UP000279307    UP000001555    UP000198287    UP000009192    UP000036403    UP000008792    UP000079169    UP000000311    UP000054359    UP000183832    UP000008237    UP000092553    UP000085678   

PRIDE

H9IVZ4   

Pfam

PF14048   MBD_C        + More
PF16564   MBDa
PF01429   MBD

Interpro

IPR032343   MBD2/MBD3_p55-bd        + More
IPR001739   Methyl_CpG_DNA-bd       
IPR037965   MBD3       
IPR025884   MeCpG-bd_2/3_C_dom       
IPR016177   DNA-bd_dom_sf       

SUPFAM

SSF54171   SSF54171       

ProteinModelPortal

H9IVZ4   S4P4C9   A0A437AZI5   A0A2A4J970   A0A194Q2D3   A0A212ERK3   + More
A0A1E1WJW8   A0A194RD56   A0A2A4J8N7   A0A2H1W0H3   A0A1B6BY16   A0A1B6M9B3   D6WEM7   Q17MF7   A0A0K8TM56   B0WJR3   A0A1Y1K0J1   A0A347ZJC5   A0A023EJF6   A0A146LQ99   A0A1E1WTI8   A0A067RKE5   A0A2J7PHQ3   A0A1B6D9Z9   A0A1Q3F3C7   A0A1W4WI29   A0A2M4CHJ3   A0A2M4CHY6   A0A1B6EXT5   A0A1B6MJK8   A0A1B6JU75   A0A0T6BCW3   Q7PJP8   A0A2M4C132   A0A2M3ZDK9   A0A2M4AY77   A0A0A9X6D1   T1DQ22   U5EQR4   A0A158NEN6   K7IVW4   A0A0C9R3N0   E0VRJ1   A0A1I8QEX3   A0A0L7RFE3   A0A0A9Z655   T1JMF5   A0A023FAH0   A0A310SM96   A0A069DRK8   A0A423TIY8   A0A087ZRU7   R4G3U4   A0A195FKQ4   A0A154PBQ4   J3JWE2   A0A151XIY4   A0A195BWJ1   A0A158NEN5   E9IJB3   F4WRR4   A0A1I8N258   A0A444TTX2   A0A195DZL7   A0A232ER39   A0A0C9QUG5   A0A195CSQ0   A0A3Q8VL54   A0A026WWB4   W8C775   V5HJF9   B7Q0K4   A0A226F4J4   G3MQS7   A0A0C9SBS9   A0A023GH29   A0A2R5L419   A0A293LHP0   A0A224YTB4   A0A131Z3U2   A0A131X9C1   A0A034WUG7   A0A0Q9XAK3   A0A1E1XC02   A0A224XIQ8   A0A0A1XB44   A0A0K8V815   L7M5F6   A0A2J7PHQ4   A0A0J7L7W8   A0A0Q9W241   A0A3Q0IS92   E2AQ93   A0A087UA68   A0A1J1HZA5   E2B3C1   A0A0M3QY13   A0A1S3H6V1   A0A1L8DI16   A0A0P4VV78  

PDB

6CEV     E-value=7.61344e-09,     Score=140

KEGG

101740016    K11590 methyl-CpG-binding domain protein 2 | (RefSeq) methyl-CpG-binding domain protein 3

GO

GO:0003677   GO:0005634   GO:0000122   GO:0008327   GO:0006346   GO:0006468   GO:0004713   GO:0030286   GO:0008270   GO:0016787   GO:0004190   GO:0006508   GO:0016286  

PANTHER

PTHR12396:SF12  

Length:

199

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00148

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29021

outside

1  -  199

 

 

Pi

226.326204

Theta

181.450415

Tajima's D

0.660932

CLR

0.006874

CSRT

0.564871756412179

Interpretation

Uncertain