SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12607  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001415
Annotation
PREDICTED:_uncharacterized_protein_LOC103519968_isoform_X3_[Diaphorina_citri]
Location
Bomo_Chr21(+):9216130-9221902      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.831
 

Sequence

CDS
ATGCAAATCTTTGTGAAGACTCTAACTGGCAAGACCATTACATTAGAAGTGGAGCCTTCTGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACTCTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCATCCGACACAATTGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTAAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCATCCGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACTGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAATGCAGATCTTCGTAAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACTCTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACTCTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTATTGCGTCTTCGTGGAGGCATGCAGATCTTCGTAAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCATCCGACACAATTGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTATTGCGTCTTCGTGGAGGCATGCAGATCTTCGTAAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCATCCGACACAATTGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTATTGCGTCTTCGTGGAGGCATGCAGATCTTCGTAAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCATCCGACACAATTGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTATTGCGTCTTCGTGGAGGCATGCAGATCTTCGTAAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCATGCAGATCTTCGTGAAAACTCTGACCGGTAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAATATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAATGTAA
Protein
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM

Summary

Uniprot
A0A3Q0JF84   A0A2V2XAK1   A0A2V2WXM7   A0A3L6KU91   A0A3Q8IL40   A0A381MWQ8   + More
A0A3P8PAX2   A0A182G3H1   Q59EM9   A0A0V0UP34  
Pubmed
29708484    30409989    26483478   
EMBL
PRFC01000016    PWV17888.1    PRFC01000046    PWV12995.1    QSBY01000011    RHW67705.1    + More
CP029535    AYU83724.1    UINB01000036    SUZ46748.1    JXUM01141442    KQ569246    KXJ68707.1    AB209782    BAD93019.1    JYDN01000241    KRX52531.1   
Proteomes
UP000079169    UP000274082    UP000265100    UP000069940    UP000249989    UP000054681    + More
PRIDE
Q59EM9   
Pfam
PF00240   ubiquitin        + More
PF01020   Ribosomal_L40e
Interpro
IPR029071   Ubiquitin-like_domsf        + More
IPR019954   Ubiquitin_CS       
IPR019956   Ubiquitin       
IPR000626   Ubiquitin_dom       
IPR011332   Ribosomal_zn-bd       
IPR038587   L40e_sf       
IPR001975   Ribosomal_L40e       
SUPFAM
SSF54236   SSF54236        + More
SSF57829   SSF57829       
Gene 3D
2.20.28.70    
ProteinModelPortal
A0A3Q0JF84   A0A2V2XAK1   A0A2V2WXM7   A0A3L6KU91   A0A3Q8IL40   A0A381MWQ8   + More
A0A3P8PAX2   A0A182G3H1   Q59EM9   A0A0V0UP34  
PDB
5B83     E-value=3.31199e-146,     Score=1335

Ontologies

KEGG
692376    K08770 ubiquitin C | (RefSeq) Ubi3; polyubiquitin
GO
GO:0003735   GO:0005840   GO:0006412   GO:0005515   GO:0006468   GO:0005524   GO:0004713   GO:0030286   GO:0008270   GO:0016787   GO:0004190   GO:0006508   GO:0016286  

Topology

Length:
1597
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00035
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1597
 
 

Population Genetic Test Statistics

Pi
287.939293
Theta
180.249397
Tajima's D
2.471768
CLR
0.36784
CSRT
0.942002899855007
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
26280517 AKIEETTKMEPK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
27102218 TITIEVEASDTIENVK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28467696 AKIETNFNTIQTK 100.00 0.002
28556443 NEMIAAITNR 100.00 0.003
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 TITLEVEASDTIENVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 MQIFVK 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
28556443 ESTLHLVLR 100.00 0.007
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