Gene

KWMTBOMO12597

Pre Gene Modal

BGIBMGA001545

Annotation

PREDICTED:_hemicentin-2-like_[Amyelois_transitella]

Location

Bomo_Chr21(+):8924420-8957457      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.659

CDS

ATGTGGACGGCAGAACTGAGTTGTATCTTCATATTATTCGGTGTGTCAGCCGGCGGCGGAGGTTGGGAACCTCTAGGGCAGCCGTACTTCGACAATAGTACGAAGCGCGAAGCCACCGCTGCTGTTGGACAGCCTGCGTATTTACACTGCAAAGTCCGAAATCTGGCTGATCGAGCGGTATCCTGGATTCGAAAACGAGACCTGCACATTCTCACGGTCGGCGTCCACACGTACAGCAGTGACGCACGTTTTGCCGCGTTACACGCCGACGGCTCCGACGAGTGGACGCTGCGAGTGTCGCCAGCGCAGCCGCGCGACTCCGGCGCCTACGAATGTCAAGTCTCAACTGAACCTAAAATCAGTCTCTCCTTTCGACTCACGGTTGTCGTGTCAAAGGCCGAGATATTATCGGGACCCGAGCTGTTCGTCAGGGCCGGTTCAGACATCAATCTCACTTGTGTCGCGAAACACGCCCCTGACCCACCGAGCTTTATTTACTGGTACCGAGGCGAGCAGGTGGTAAATTACGCACAGCGAGGGGGCATCAGCGTAGAAACAGAACAGCGGACGAGAACAAGTCGACTCCTCATAGCAAGGGCTTCGCCGCACGATTCAGGGAACTACACTTGTGCACCGAGTAGTTCTGAATCGGCCTCAGTCATAGTCCACGTGCTGAGTGGGGAAAGACCAGCAGCAATGCAGAGTTCGGGGTCAACGCCTCCGTCTTTGAACAACGGTATCCTCGTCACCACGGTTGCAATCACCACTCTCGGAAGACCACGGGTGCTCCTTCTCTTCAGCCTCCTGATCATCATCACTTACTTATTTATCGCCCATTTATTAGCCGTCATAAAAGCAACCATTACTCTAAAGAATAAAACGATTTTTACAATGTCTTCAAGATGA

Protein

MWTAELSCIFILFGVSAGGGGWEPLGQPYFDNSTKREATAAVGQPAYLHCKVRNLADRAVSWIRKRDLHILTVGVHTYSSDARFAALHADGSDEWTLRVSPAQPRDSGAYECQVSTEPKISLSFRLTVVVSKAEILSGPELFVRAGSDINLTCVAKHAPDPPSFIYWYRGEQVVNYAQRGGISVETEQRTRTSRLLIARASPHDSGNYTCAPSSSESASVIVHVLSGERPAAMQSSGSTPPSLNNGILVTTVAITTLGRPRVLLLFSLLIIITYLFIAHLLAVIKATITLKNKTIFTMSSR

Uniprot

A0A3S2LUX2   A0A2A4JM26   A0A2A4JRH3   A0A212ELK7   A0A194Q4T7   A0A0N1IP48   + More
A0A336KD98   W5J598   A0A182FS04   B4QU29   B4HI17   Q7PUC4   B0WFL2   A0A182NQP9   A0A182KAT0   A0A182PRS9   A0A182RA57   Q179I1   A0A2S2R2Z7   A0A182GLY2   A0A182HKE1   A0A182H4P8   A0A2H8U2T4   A0A182X9F5   A0A1S4GBB1   A0A182VFY5   J9L9Q8   A0A1Y9IVK1   A0A1B6MCG7   A0A1J1IMB4   A0A182QP59   A0A084W055   A0A3L8DGK6   D6WKJ3   A0A0C9PJB4   A0A1J1IH72   A0A3B0KP62   A0A084W049   A0A1S4GBG5   Q7PX67   A0A1Y9J0M5   A0A1Y9IVC5   A0A182QLK4   A0A1Y9IS36   A0A194Q289   A0A0L7R2A3   B4NAW4   Q294Z8   A0A1A9WJ22   A0A1I8MR61   A0A1B0FNB0   A0A1B0AJ69   A0A1A9UWE0   Q5U198   Q59DX6   B3P4J7   B4PM67   B4KDZ6   A0A0L0C3D7   A0A1W4WDJ3   A0A0M4EP47   A0A1I8QBZ1   B4M5D4   A0A182L8M5   A0A0N1IC42   B3M0X9   B4JUP6   A0A1J1IIK8   A0A182MCL2   A0A151XIL3   A0A195FFZ1   A0A195CPM0   A0A3R7MT04   W8BV78   A0A0A1WHJ4  

Pubmed

22118469    26354079    20920257    23761445    17994087    12364791    + More
17510324    26483478    24438588    30249741    18362917    19820115    15632085    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30467080    17550304    26108605    20966253    24495485    25830018   

EMBL

RSAL01000006    RVE54304.1    NWSH01001012    PCG73135.1    NWSH01000717    PCG74635.1    + More
AGBW02014033    OWR42374.1    KQ459585    KPI98420.1    KQ460622    KPJ13511.1    UFQS01000083    UFQT01000083    SSW99060.1    SSX19442.1    ADMH02002101    ETN59156.1    CM000364    EDX13360.1    CH480815    EDW42599.1    AAAB01008987    EAA01771.6    DS231918    EDS26280.1    CH477349    EAT42909.1    GGMS01015142    MBY84345.1    JXUM01073826    JXUM01073827    JXUM01073828    KQ562797    KXJ75108.1    APCN01000826    JXUM01109976    JXUM01109977    KQ565370    KXJ71043.1    GFXV01008073    MBW19878.1    ABLF02039845    ABLF02039849    ABLF02039858    ABLF02039860    GEBQ01006398    JAT33579.1    CVRI01000051    CRK99609.1    AXCN02001508    ATLV01019091    KE525262    KFB43599.1    QOIP01000008    RLU19580.1    KQ971342    EFA03572.1    GBYB01001053    JAG70820.1    CRK99597.1    OUUW01000014    SPP88409.1    ATLV01019088    ATLV01019089    KFB43593.1    EAA01782.5    AXCN02001506    AXCN02001507    KQ459564    KPI99656.1    KQ414666    KOC65010.1    CH964232    EDW80928.2    CM000070    EAL28814.2    CCAG010016377    BT015994    AAV36879.1    AE014297    BT057996    AAX52946.2    ACM16706.1    CH954181    EDV49512.1    CM000160    EDW96933.1    CH933806    EDW16017.1    JRES01000953    KNC26850.1    CP012526    ALC45810.1    CH940652    EDW59845.1    KQ461068    KPJ09899.1    CH902617    EDV43208.2    CH916374    EDV91216.1    CRK99602.1    AXCM01000701    KQ982080    KYQ60128.1    KQ981617    KYN39276.1    KQ977444    KYN02683.1    QCYY01002608    ROT69071.1    GAMC01009344    GAMC01009343    JAB97211.1    GBXI01016449    JAC97842.1   

Proteomes

UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    UP000000673    + More
UP000069272    UP000000304    UP000001292    UP000007062    UP000002320    UP000075884    UP000075881    UP000075885    UP000075900    UP000008820    UP000069940    UP000249989    UP000075840    UP000076407    UP000075903    UP000007819    UP000075920    UP000183832    UP000075886    UP000030765    UP000279307    UP000007266    UP000268350    UP000053825    UP000007798    UP000001819    UP000091820    UP000095301    UP000092444    UP000092445    UP000078200    UP000000803    UP000008711    UP000002282    UP000009192    UP000037069    UP000192221    UP000092553    UP000095300    UP000008792    UP000075882    UP000007801    UP000001070    UP000075883    UP000075809    UP000078541    UP000078542    UP000283509   

PRIDE

Q5U198    Q59DX6   

Pfam

PF07679   I-set        + More
PF00047   ig

Interpro

IPR003599   Ig_sub        + More
IPR013783   Ig-like_fold       
IPR037448   Zig-8       
IPR013098   Ig_I-set       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR013151   Immunoglobulin       
IPR013106   Ig_V-set       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A3S2LUX2   A0A2A4JM26   A0A2A4JRH3   A0A212ELK7   A0A194Q4T7   A0A0N1IP48   + More
A0A336KD98   W5J598   A0A182FS04   B4QU29   B4HI17   Q7PUC4   B0WFL2   A0A182NQP9   A0A182KAT0   A0A182PRS9   A0A182RA57   Q179I1   A0A2S2R2Z7   A0A182GLY2   A0A182HKE1   A0A182H4P8   A0A2H8U2T4   A0A182X9F5   A0A1S4GBB1   A0A182VFY5   J9L9Q8   A0A1Y9IVK1   A0A1B6MCG7   A0A1J1IMB4   A0A182QP59   A0A084W055   A0A3L8DGK6   D6WKJ3   A0A0C9PJB4   A0A1J1IH72   A0A3B0KP62   A0A084W049   A0A1S4GBG5   Q7PX67   A0A1Y9J0M5   A0A1Y9IVC5   A0A182QLK4   A0A1Y9IS36   A0A194Q289   A0A0L7R2A3   B4NAW4   Q294Z8   A0A1A9WJ22   A0A1I8MR61   A0A1B0FNB0   A0A1B0AJ69   A0A1A9UWE0   Q5U198   Q59DX6   B3P4J7   B4PM67   B4KDZ6   A0A0L0C3D7   A0A1W4WDJ3   A0A0M4EP47   A0A1I8QBZ1   B4M5D4   A0A182L8M5   A0A0N1IC42   B3M0X9   B4JUP6   A0A1J1IIK8   A0A182MCL2   A0A151XIL3   A0A195FFZ1   A0A195CPM0   A0A3R7MT04   W8BV78   A0A0A1WHJ4  

PDB

6EG0     E-value=1.72581e-80,     Score=761

KEGG

101741972    no KO assigned | (RefSeq) limbic system-associated membrane protein-like

GO

GO:0016021   GO:0050808   GO:0032589   GO:0007606   GO:0005515   GO:0005549   GO:0007608   GO:0016020   GO:0005737   GO:0008270   GO:0016787   GO:0004190   GO:0006508   GO:0016286  

PANTHER

PTHR23279  

SignalP

Position:   1 - 19,         Likelihood:  0.822630

 

 

Length:

301

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.61666

Exp number, first 60 AAs:

2.82144

Total prob of N-in:

0.16924

outside

1  -  261

TMhelix

262  -  284

inside

285  -  301

 

 

Pi

228.206502

Theta

178.900757

Tajima's D

1.311298

CLR

0.369626

CSRT

0.741512924353782

Interpretation

Uncertain