Silkworm Genome Informatics Database

Gene

KWMTBOMO12590 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001542

Annotation

Hrp59_protein_[Danaus_plexippus]

Location

Bomo_Chr21(+):8657806-8663375 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.147

CDS

ATGGATCTTCAGAAAGAAAAAGAACGCGACCGCTCGAGACGCGGTGATAGGCCATCGAGGTTCTCAGACGCCAACAGAGACCGGTCGTCAGACCGAGATCGCACCGAGAGCAGGCGCTTATTTGTATCAAACATACCATACGAATTTCGTTGGACGGAACTGAAAGATTTGTTCAAAGAGAAAGTTGGAGATGTGGCTTATGTAGAATTGTTGACCGATGACAGTGGAAAAGCAAGAGGATGTGGTATTGTTGAATTTACAAACACAGAGGCAATGAAGAAGGCACTATTTGTGATGCATCGGTATGAGTTGAATGGACGAAAACTTGTTCTAAAAGAAGAAACTGGAAATGAAAGAAGAATGCACACTTCTAGACCACAACATAGAGAAGGGAGAAATAATAGAGATGACAAAGACAATTGGGGAATTAATAAGCCAAGAGAACCAGAGAATTTAAACACATATGGATTAAGTTTACAATTTTTGGAATCTATCAATGTTCAACCTCCTTTAGTGAAGAAAGTGTTTGTGGCAAATCTGGATTACAAAGCTGACCAAGCCAAAATTAAGGAGGTATTTAAAATGGCTGGTAAAGTACGTAACATTGATTTGGCTGTTGATAAAGACGGTAATAGTAGAGGATTTGCTGTCATTGAGTATGACCACCCAGTTGAAGCAGTACAGGCTATTTCAATGTTTGATAAACAAATGTTGTATGAACGAAGAATGACAGTACGTATGGACAGAGGAGTAACAGACAAGGGAGAACTTAGGTTACCTGAAGGCTTAAAAGGAATCGGCATGGGACTAGGACCGAATGGCGAGCCTTTACGTGACGTAGCTAGAAATTTACCACAGGCTAACAACACAACTAACATGAACTTGGCCAATACAGCACCTACTATAGGTGCTGGAGTTTTGGGTGCAGTTCCAACAGCGGCTGGTGTTGCATTGAATGGTTTAGGATCTGGATTGTCTGCGAATGCTTTGAATGCCAACAGTGCTCTTGGTGGAGGCTTAGGCCTACAGGCATTGGGATTGACTGGCTTAGGCGCACTCCAAAACCAGTTACTCCAACAAGGTTTGACAGCTAACGATTTAGCAACAGTTCTAACAGCACAGGCAAATGTGAACCAAGCAGCTAGTTTGGGGATCGGAAACAATGAAATGAATTCTAATGTTCTTACTTCTGGAGTTATGGGTGGCAATCAGATGAATTCTGGACCTCTTTCGAACATTTCAGTACCGAACCAGGGATATGGCCGCGACACTGGAGTCCAACAATCCACTAGGGACAAACCATCAGACATGGTCATAATTACCAATTTACCACAGACAGTGACTTGGCAATTGATTAGAGAGAAGTTCAGTGAATGTGGCGATGTTAAGTTCGCTGAAATGACTGCTCCAGATACGGCCATCGTTCGATTCCACAAGGAATGGGATGCGGAGAGAGCTATAAAAATGTTCGACAGGACTCGTATCGACGGCCGCACAATCGATGTGCGCTACTTTTAA

Protein

MDLQKEKERDRSRRGDRPSRFSDANRDRSSDRDRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVARNLPQANNTTNMNLANTAPTIGAGVLGAVPTAAGVALNGLGSGLSANALNANSALGGGLGLQALGLTGLGALQNQLLQQGLTANDLATVLTAQANVNQAASLGIGNNEMNSNVLTSGVMGGNQMNSGPLSNISVPNQGYGRDTGVQQSTRDKPSDMVIITNLPQTVTWQLIREKFSECGDVKFAEMTAPDTAIVRFHKEWDAERAIKMFDRTRIDGRTIDVRYF

Uniprot

H9IWB1 A0A2A4K4A5 A0A1E1WAV5 A0A212F3V6 A0A3S2TSX3 S4P943 + More

Pubmed

19121390 22118469 23622113

EMBL

BABH01006290 NWSH01000145 PCG79091.1 GDQN01006916 JAT84138.1 AGBW02010495 + More
OWR48393.1 RSAL01000006 RVE54302.1 GAIX01005696 JAA86864.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000283053

PRIDE

H9IWB1

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9IWB1 A0A2A4K4A5 A0A1E1WAV5 A0A212F3V6 A0A3S2TSX3 S4P943 + More

PDB

2DO0 E-value=2.34643e-18, Score=227

KEGG

101738717 no KO assigned | (RefSeq) heterogeneous nuclear ribonucleoprotein M

GO

GO:0003723 GO:0003676 GO:0000166 GO:0004386 GO:0005524 GO:0005737 GO:0008270 GO:0016787 GO:0004190 GO:0006508 GO:0016286

Length:

505

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.54393

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06547

outside

1 - 505

Pi

172.267655

Theta

157.127329

Tajima's D

-0.662876

CLR

0.156087

CSRT

0.204139793010349

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26280517	GEVYHGYHFTCATCGVEIDHTAR	100.00	1e-09
28556443	FAEMTAPDTAIVR	100.00	1e-09
26280517	GAVDGGINVPHSIKR	100.00	2e-04
26280517	GCCNACEKPIVGQVITAIGR	100.00	6e-04
28556443	GIGMGLGPNGEPLR	100.00	6e-04
28556443	GFAVIEYDHPVEAVQAISMFDK	100.00	0.001

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics