SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12589  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001430
Annotation
hypothetical_protein_KGM_21105_[Danaus_plexippus]
Full name
Integrator complex subunit 3 homolog       + More
Integrator complex subunit 3      
Alternative Name
SOSS complex subunit A homolog
SOSS complex subunit A
Sensor of single-strand DNA complex subunit A
Location in the cell
Nuclear   Reliability : 3.419
 

Sequence

CDS
ATGGAGCAGGCCAAATCTAATTCACCCAAACTATTTGTGAGCACCGCAATAGAAAATAAGGATGAAGTGGAAGAGAGGTACGAAAGGGCTTACAACTATTTTCAATCTCTTGTAGCGGACTGCACCGAAAAAGAAGCACATGACGCCCTTAATAACGCAGTCTGTAAAAATCATGAGGAAGTTTCAGTTGGCATGCTCATGTCTATACTTACAGAACCGCAGAATGCTACAAAATGTTACAGAGATCTTACACTTATAACCAGAGATGGACTAACGTGTGTGCTTAATAATCTATCCAATTTAATTTTAGAAAGGTACTTAAAGTTTTCGGACACTACAAGGAACCAATTAATGTGGCTAATAAAAGAGATGATTAGAAATGCAGTTACAGGAATAGATAATGTTTGTTGGAATTTAATGCGATACGCATCCGGAGGCGATATAACACCCAAAAATATTATATTAGTAGAATCTCTGTTGGACATGTTTATTGAACATAGAGGTTGGTTGGATAAGTTCCCTGTACTTATATGCATGGTTGTGTATACATACTTAAGGCTTGTAGAAGACCATAATATACCCCAGTTAATGAACCTAAGACAGAAAGAAGTTAACTTTGTTATCACTCTGATAAGGGAACGTTTTACTGATGTCTTATCTTTGGGAAGAGACTTAGTAAGACTGCTTCAAAATGTTGCTCGCATACCAGAGTTCAATCAGCTTTGGCAGGATATCTTGGTCAATCCCAAATCATTAAGCCCTACATTTACCAATGTGCTACAATTGTTACAAACACGAACATCTAGAAGGTATCTTCAGTCAAGATTAACTCCGGACATGGAAAGGAAATTAGTTTTTCTAACTTCACAAGTTCGGTTCGGTCACCACAAAAAGTATCAAGAATGGTTCCAGAGACAATATCTTGCCACACCAGAGTCACAATCACTAAGAAGTGATATGATAAGGTTTATTGTTGGAGTAATTCATCCCACTAATGAACTTCTCTGTTCTGATATAATTCCCAGATGGGCAGTGATTGGTTGGCTCCTTACAACTTGTACGTCAAATGTAGCTGCATCAAATGCTAAATTGGCCCTGTTTTATGATTGGCTTTTTTATGACCCTGAAAAAGACAACATTATGAATATAGAACCTGCCATCCTTGTTATGCACCATTCAATGAGATCACATCCAGCAGTGACTGCAACATTATTAGATTTCTTGTGTCGAATCATTCCAAACTTCTACCCACCATATGCAGAGAAAGTTAGACAAGGAATATTCAATTCCCTTCAACAAATAATTGAGAAAAGGGTTTTGCCAAATTTGCATCCTCTGTTTGACTCTCAAAAGTTGGACCGAGAATTGCGTTCCACTGTAAGAGAAACCTTTAAAGAATTTTGTACGAATGGGAATGGTGAAGGTGTATCTGGCATACGCGATGAGGGTACTGATGATGCAATACCAAGAGTTGGGTCCGATGAACCAGCATTCTCGGATGATGAAGAAGAGACCATTACACCAACTATAGCAGAAGATACTGATGATGATGATTTACCTTTATCAGAAGTTCGTGCCAGAGAAAGACCTGAACTAGCTGCTGCACTGCCGTTAGTTTTGCGACCACTAGCAGAAACGCTTCTGGATGAGCGAACATCATCTTCCGCAACTGCTTTGCTTGATGCATGCGGATCTCCATCGCCAACGCCGAAAGCTCTCGCAGATCTTTTTGCTGCTGCGGTTCAAGAAGCAACACCTCTACGTATAAGCAACAATCCCGCTCCAGCCGAATTAGATAATGCAATAAATTCACCGCTTTTTTCCATGTTCAATTATCTAATAGACTCGAGTAGTGGAGCTGAACATAAACGGAAACTGGTATTAGAAACGTTCAAAGAAATCCACAGTCAAGGTTCTCTGAGATGTGTCGGTTTTAGCCTACTGTTTTATTTAAGAGTCTGCTACGAAAGAGATCGTCGTTCAGAACGAGATTCGGCGAAAAGACGTAACGTGAAATTCAAAGCTGACGTTTATAAGGACTACTGTAGTTATTTAGAATTAAAATTAGCCGAGAGCTTAGCGGACGATTTCGAAAGGTGCCAAGAATACGACACCAATGTTTTAGTTTGGTTAATACCAGATGTTTATAGAGAGTTCAAAGACCAAGCACAGAATCATATAAGATTATTGCATGCAATCGTATCGACCCTAGATGCGTGTCAACTTCAAAGACTAATCTGTTTGACATTGCAAGGAAATTTAATGATGTTCAAATCGGACGATATCACGACAATGTTGTCGACCAGCCTTGGATGGGAGACGTTCGAACAGTATTGTCTGTGGCAACTGTTAACCGCCCATGACATATCCGTTGAGGATGTTTTACCGATCATTCCGAAGTTATCATTCAAAGAGCATTCGGAGGCGCTCACGTCCGTTCTGTTGATGTTGAAGCAGGAAAGACCGACCGCCGATGTCGTAAGACAGTTGTTCTGTAGAACATACGACGAGGAGGATACATCGGTGGTTTCAACGTTGATGTATTGGTGCCAAGATTACGAAGATAAAGTCGGTGATTTAGTCGCGGCATTGTTGAGTACGCGCTATCCGGGTACTAGTCCGAACAAGCGAAAACGTCCAGGGAAACACAGCATGCCACCAAACGCACCGCCGTCTGCAGAGTTGGTGCTCAAACATTTGGAGCAGATGAGAATGTGCTGCGTTGAACAAGACGACATGTCGATTTTCAACATGGAATGTATGCAGAAGGCCCTACAACAAGCTCAATCGAATAGTAGCGATAGTTTAAGGGAAGAAGAGATTGTGAAGCCGAAACAAGCTAAACGTCGCAAGAAGGCAATTTCGGACAGTGATTGA
Protein
MEQAKSNSPKLFVSTAIENKDEVEERYERAYNYFQSLVADCTEKEAHDALNNAVCKNHEEVSVGMLMSILTEPQNATKCYRDLTLITRDGLTCVLNNLSNLILERYLKFSDTTRNQLMWLIKEMIRNAVTGIDNVCWNLMRYASGGDITPKNIILVESLLDMFIEHRGWLDKFPVLICMVVYTYLRLVEDHNIPQLMNLRQKEVNFVITLIRERFTDVLSLGRDLVRLLQNVARIPEFNQLWQDILVNPKSLSPTFTNVLQLLQTRTSRRYLQSRLTPDMERKLVFLTSQVRFGHHKKYQEWFQRQYLATPESQSLRSDMIRFIVGVIHPTNELLCSDIIPRWAVIGWLLTTCTSNVAASNAKLALFYDWLFYDPEKDNIMNIEPAILVMHHSMRSHPAVTATLLDFLCRIIPNFYPPYAEKVRQGIFNSLQQIIEKRVLPNLHPLFDSQKLDRELRSTVRETFKEFCTNGNGEGVSGIRDEGTDDAIPRVGSDEPAFSDDEEETITPTIAEDTDDDDLPLSEVRARERPELAAALPLVLRPLAETLLDERTSSSATALLDACGSPSPTPKALADLFAAAVQEATPLRISNNPAPAELDNAINSPLFSMFNYLIDSSSGAEHKRKLVLETFKEIHSQGSLRCVGFSLLFYLRVCYERDRRSERDSAKRRNVKFKADVYKDYCSYLELKLAESLADDFERCQEYDTNVLVWLIPDVYREFKDQAQNHIRLLHAIVSTLDACQLQRLICLTLQGNLMMFKSDDITTMLSTSLGWETFEQYCLWQLLTAHDISVEDVLPIIPKLSFKEHSEALTSVLLMLKQERPTADVVRQLFCRTYDEEDTSVVSTLMYWCQDYEDKVGDLVAALLSTRYPGTSPNKRKRPGKHSMPPNAPPSAELVLKHLEQMRMCCVEQDDMSIFNMECMQKALQQAQSNSSDSLREEEIVKPKQAKRRKKAISDSD

Summary

Description
Component of the Integrator (INT) complex. The Integrator complex is involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes. Mediates recruitment of cytoplasmic dynein to the nuclear envelope, probably as component of the INT complex.
Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. The SOSS complex is required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependent signaling pathways. In the SOSS complex, it is required for the assembly of the complex and for stabilization of the complex at DNA damage sites.
Component of the Integrator (INT) complex. The Integrator complex is involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes (Probable). Mediates recruitment of cytoplasmic dynein to the nuclear envelope, probably as component of the INT complex (PubMed:23904267).
Subunit
Belongs to the multiprotein complex Integrator, at least composed of INTS1, INTS2, INTS3, INTS4, INTS5, INTS6, INTS7, INTS8, INTS9/RC74, INTS10, INTS11/CPSF3L and INTS12. Component of the SOSS complex, composed of SOSS-B (SOSS-B1/NABP2 or SOSS-B2/NABP1), SOSS-A/INTS3 and SOSS-C/INIP. SOSS complexes containing SOSS-B1/NABP2 are more abundant than complexes containing SOSS-B2/NABP1. Interacts with SOSS-B1/NABP2, SOSS-B2/NABP1 and SOSS-C/INIP; the interaction is direct. Interacts with NBN/NBS1.
Similarity
Belongs to the Integrator subunit 3 family.
Keywords
Complete proteome   Reference proteome   Acetylation   Alternative splicing   Cytoplasm   DNA damage   DNA repair   Nucleus   Phosphoprotein   3D-structure  
Feature
chain  Integrator complex subunit 3 homolog
splice variant  In isoform 2.
EMBL
NWSH01000145    PCG79089.1    RSAL01000006    RVE54301.1    AGBW02010495    OWR48394.1    + More
GDQN01005244    JAT85810.1    ODYU01003826    SOQ43075.1    KQ460622    KPJ13515.1    BABH01006289    KQ459585    KPI98416.1    JTDY01006988    KOB65549.1    GL763764    EFZ19350.1    LJIG01022765    KRT78830.1    KQ434886    KZC10189.1    GBYB01013510    JAG83277.1    GEZM01096470    JAV54877.1    KQ971380    EFA12368.2    JH432114    UFQT01000108    SSX20104.1    GGLE01003062    MBY07188.1    JH816741    EKC20815.1    GFWV01019056    MAA43784.1    NCKV01001215    RWS28789.1    AAAB01008859    CH477484    EAT40190.1    GGMR01002258    MBY14877.1    DS235222    EEB13506.1    AK040147    AK043206    BC003209    BC055344    AC145082    AABR07072757    AAQR03179064    AAQR03179065    AAQR03179066    AAQR03179067    AAQR03179068    AAQR03179069    AAQR03179070    AAQR03179071    AAQR03179072    AAQR03179073    AANG04002876    AL832133    AK290025    AK298746    AK304874    BX640786    BX640950    CR627233    CR749212    CR749376    AL513523    CH471121    BC025254    BC054513    BC073985    BC098431    BC105092    BC105094    BC116458    AK025572    AK074979    BK005722    CABD030006536    CABD030006537    AJFE02058273    AJFE02058274    AJFE02058275    AJFE02058276    AJFE02058277    AJFE02058278    AJFE02058279    AJFE02058280    AJFE02058281    GAMT01000778    GAMS01004005    GAMR01006515    GAMQ01005464    GAMP01002380    JAB11083.1    JAB19131.1    JAB27417.1    JAB36387.1    JAB50375.1    AC194541    GABC01002017    GABF01007250    GABD01008896    GABE01003229    NBAG03000084    JAA09321.1    JAA14895.1    JAA24204.1    JAA41510.1    PNI90820.1    PNI90824.1    AAGW02000507    AAGW02000508    AQIA01002370    AQIA01002371    ABGA01216453    ABGA01216454    ABGA01216455    ABGA01216456    ABGA01216457    ABGA01216458    ABGA01216459    ABGA01216460    ABGA01216461    NDHI03003420    PNJ56340.1    PNJ56341.1    JSUE03002457    JSUE03002458    JSUE03002459    JSUE03002460    JU335984    JU476866    JV047974    AFE79737.1    AFH33670.1    AFI38045.1    AGTP01066446    AGTP01066447    GABZ01003985    JAA49540.1    ACTA01073328    ACTA01081328    ACTA01089328    AKHW03000146    KYO48980.1    JH000275    EGV98136.1    AEMK02000022    DQIR01098998    HDA54474.1    KE162497    EPQ08536.1    CR857667    LZPO01007946    OBS83276.1    CM001253    EHH15270.1    CM001276    EHH50315.1    LWLT01000004    AMGL01004773    KB321128    ELW47322.1    GEBF01006224    JAN97408.1    KN121497    KFO36343.1    KB016598    EPY86576.1   
Pfam
PF10189   Ints3        + More
PF00041   fn3
PF07679   I-set
PF00501   AMP-binding
PF13193   AMP-binding_C
Interpro
IPR016024   ARM-type_fold        + More
IPR019333   Int_cplx_su3       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR013098   Ig_I-set       
IPR036116   FN3_sf       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR020845   AMP-binding_CS       
IPR025110   AMP-bd_C       
SUPFAM
SSF48371   SSF48371        + More
SSF48726   SSF48726       
SSF49265   SSF49265       
Gene 3D
PDB
4OWT     E-value=0,     Score=1631

Ontologies

Topology

Subcellular location
Nucleus   Localizes to nuclear foci following DNA damage.   With evidence from 2 publications.
Cytoplasm   Localizes to nuclear foci following DNA damage.   With evidence from 2 publications.
Length:
958
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10008
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00450
outside
1  -  958
 
 

Population Genetic Test Statistics

Pi
184.102007
Theta
176.790333
Tajima's D
0.412542
CLR
1.805278
CSRT
0.488725563721814
Interpretation
Uncertain
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