Gene

KWMTBOMO12586  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001540

Annotation

PREDICTED:_regulator_of_nonsense_transcripts_1-like_[Plutella_xylostella]

Location

Bomo_Chr21(+):8617456-8624757      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.317

CDS

ATGAGTGTTGAAGCATTCGACCCAAGCTCGCAATCGCTCACGTTTCTGGAAACAGAGGAAGGGGACTTTATTGGAGCAGACACTCAAGGCTCTGAGTTTGAGTTCACGGATTTTACATTACCCTCTCAGAGCCAGACACAGGCTTCACAACATGACCATGGGTTGTCTTCATCCAACCAGGTTAACGGAATAGGACGTATAGAATTGTCGTCTAAAATCTCTAACGTGACTAATACGATACCGGAGCTGCAATTCGAAGAGGAAGATGAGGCTTTGTACAGCAACAAGGAACTTCCAGATCATGCTTGTAAATACTGTGGCATACACGACCCGGCCACAGTCGTTATGTGTAACATATGCAACAAGTGGTTCTGTAATGGCCGCGGTAACACTTCAGGCTCTCATATCATCAACCATTTAGTACGTGCAAAGCACAAGGAAGCTGCATTGCACCGTGACGGGCCACTTGGCGAAACCCTTCTGGAATGTTACTCATGTGGTGCTCGGAATGTATTCGTACTCGGCTTTATACCAGCTAAAGCTGATTCTGTTGTTGTGCTACTTTGCCGACAACCTTGTGCAGCTCAAAGCTCTTTGAAGGATATGAACTGGGATCAGGAACAGTGGAAACCTCTGATATCTGATCGTGCCTTCCTGTCTTGGTTGGTGAAAGTGCCATCAGAAACAGAACAAATGCGAGCTAGACAAGTAACTCCACAGCAAATAGGCCGCTTAGAAGAGTTATGGCGTGACAATGTGGATGCTACTTTCCAAGATTTAGAAAAACCAGGAGTAGATGAGGAACCACATCAGGTTTTGCTGAGGTATGAAGATGGGTACCAATACCAAAACATATTTGGTCCTCTTGTAAAGCTGGAAGCAGACTATGACAAGAGACTGAAAGAGTCGCAAACTCAAGAGGGTATTGAAGTTCGTTGGGATGTTGGTCTGAACAAAAAGACTATTGCCTACTTCACATTGGCTAAAACTGATAGCGATATGAAGTTAATGCACGGCGATGAATTGAGATTGAGATATGTTGGTGAGATGCATAAAGCATGGTCAGGTGTCGGTCATGTCATAAAGGTCCCAGATAACTATGGTGACGATGTTGGACTCGAACTGAAGAGCGGTGCTGGGGCCCCTCTAGATTGCACTTCTAATTTTGTTGTTGATTTCATCTGGAAGAGCACTTCTTTCGACAGAATGCAACTGGCACTACGTAAATTCGCCTTAGATGATTCTTCAGTGTCTGGTTATATATATCGGCGTCTGTTAGGCCACGAAGTTGAGGAAGTGCTGTTTCGAGTACATCTACCAAAGCATTTCAGTGCTCCTAATTTGCCAGACCTTAACAGATCTCAGGTGTACGCAGTTAAGCATGCTCTTCAGCGTCCCCTGTCTCTGATCCAAGGTCCTCCGGGAACCGGTAAGACTGTTACATCCGCTACTATAGTGTATCAGCTCGTCCGGCAAAACGGTGGACCAGTATTAGTTTGTGCACCTTCGAACACCGCCGTCGATCAACTAACTGAAAAGATACACCGGACTGGACTCAAGGTGGTCCGATTGTGTGCCAAGTCGCGAGAGGCAATGGAGTCTTCCGTATCGTTCTTGGCACTTCATGAACAAGCTCGCGCTCTCGGTTCTGCTGATAGCGAACTTCGGAAACTTACTAGACTCAAGGAAGAAGCCGGTGAACTTTCTGCCGCCGATGAAAGGCGATATCGTTCGTTGCGCCGCGCCGCTGAGAGACGCTTACTCGACGCTGCGGATGTCATATGCACCACTTGCGTAGGCGCCGGGGACCCTCGCGTTGCTCGTATGAGATTCCAGTCCATTTTGATCGATGAAGGCATGCAGTCGACCGAGCCAGAATGTATGGTGCCTGTAGTTCTAGGAGCCAGACAGTTGATTCTAGTCGGTGATCACTGTCAACTCGGTCCCGTGGTAATGTGTAAGAAAGCTGCAAAAGCCGGTCTCAGCCAGAGTCTTTTTGAACGTTTGGTCGTTCTCGGAATCCGTCCGTTCCGACTCGAAGTACAGTACCGCATGCATCCTGAACTTTCACGTTTTCCTTCAGACTTCTTTTACGAAGGGTCCTTGCAGAATGGAGTCAGCGCCGAAGAAAGGCGTTTACACAAAATCGATTTTCCGTGGCCCAGACCTGACAGGCCCATGTTCTTTTACGTCACTCAGGGACAGGAAGAGATCGCCGGCTCCGGAACTTCGTACTTAAACAGAACTGAAGCTGCGAATGTTGAAAAACTCACAACTCGGTTCTTAAAAGCAGGCGTCCGTCCCGAGCAGATCGGTATAATAACACCTTATGAGGGACAACGATCCTATCTTGTGCAGCACATGCAGTACCAGGGCAGTCTACATGCTAAACTGTACCAAGAAATCGAGGTTGCCAGCGTCGATGCCTTCCAAGGGAGGGAAAAAGACATCATAATTATGTCTTGCGTGCGGTCCAACGAACACCAAGGAATTGGCTTCTTGAGCGATCCGCGACGTCTTAACGTCGCTCTCACGCGCGCCAAATACGGCCTCATCGTCGTCGGCAATCCGAAAGTGCTCAGTAAACAGCCGCTCTGGAATCACTTGCTCGCTTTCTACAAAGAGCGCCGTGTACTTACCGAAGGACCGCTTTCGAATCTGAAAGAATCCGCCATTCAGTTCGCAAAACCGAAGAAGCTGGTGAACTCTCAGAATCCTGGCTCCCATTTCATGTCCACCTCGATGTTCGACGCGCGTGAAGCCATGGTGCCGGGCTCCATCTATGACCGAGCGCGGCCTCCGCGAGACCCGCTGGCGTACGTGGGGCCGGAGCGCGGCGCCCTGCTACATGCGCCGGTGCCGCCAGCCGCCTTTCCAACTCAACGCCTGCCGCCGCGCATGCCGCGCCGTCGCGTCCCGCCGCGCTTCTCGCAGGAGCCCCTGTCGCAGCAGCCGCCGCTCTCACTGTCGCAGGGCGCATCGCAACCGGACTTCAGTCAGGAGTCCACGGCGCCGGAGTGTCCGTCGCAACCGGACGGGCTGCTGTCGCAGGACTCTACGTACCAGGGCGGGTTCAGAGCACGCTGCAGTCAGTACTGA

Protein

MSVEAFDPSSQSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELSSKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQQIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMHKAWSGVGHVIKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGYIYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARALGSADSELRKLTRLKEEAGELSAADERRYRSLRRAAERRLLDAADVICTTCVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLVNSQNPGSHFMSTSMFDAREAMVPGSIYDRARPPRDPLAYVGPERGALLHAPVPPAAFPTQRLPPRMPRRRVPPRFSQEPLSQQPPLSLSQGASQPDFSQESTAPECPSQPDGLLSQDSTYQGGFRARCSQY

Uniprot

H9IWA9   A0A2H1W000   A0A212F892   A0A437BGB7   A0A2A4K495   S4PE18   + More
A0A1Y1LA15   A0A232FG91   A0A067QZ49   K7INP6   A0A2A3ELK0   A0A088A104   A0A0L7QUG9   A0A195CLG1   A0A195D7K7   A0A195BQY4   A0A0J7KXE5   A0A195EZE6   A0A158NDR3   A0A0C9RWD7   A0A026W4A1   N6T516   A0A151X4G6   D6WCA6   A0A224XII3   A0A0V0G5D2   A0A069DY54   A0A023F5K8   T1HV29   A0A0T6B0G5   A0A146L082   A0A0A9YZI2   A0A1B6C3L5   E0VJF4   E2BGD3   A0A1B0GQS5   A0A1B0F064   A0A0K8UWJ1   A0A034W0V7   A0A034VYB5   A0A0A1XDI6   W8ATN6   A0A3S3PYI0   A0A443SQE1   A0A0P4YLQ8   A0A0P6A6I4   A0A0P5U449   A0A0P5WRY4   A0A0P5V5B8   E9H192   Q16NZ5   A0A1S4FUT2   U5EZJ9   A0A0P5A1M8   A0A0P5B984   A0A0P5VDU0   A0A0P5LAM3   A0A0P5N950   A0A0P5BWE5   A0A0P6EGB6   A0A0P5ADA3   A0A0P5UM32   A0A2R5LL81   A0A1B0AKT5   A0A1A9XX42   A0A1Z5KW56   A0A1A9ZK15   V5GRL0   A0A0P5NF99   A0A1A9VS24   A0A224Z7N9   A0A131Z5A5   A0A131XGM4   A0A1E1XAI5   A0A2C9GGV3   A0A3Q0IZ16   L7M5Y4   A0A2S2R5P3   A0A1Q3F754   A0A1Q3F7E0   J9K5W5   A0A2S2PS06   A0A182NR05   A0A182JG24   A0A1A9W307   A0A2H8TY30   A0A2M4CQH5   A0A1I8PHH0   T1PCL1   B0WYS1   A0A182YNB3   A0A336KT50   A0A1I8NDC1   A0A2M4A3L2   A0A2M4BAN4   A0A2M4A358   A0A182RG13   A0A182MS50   A0A182U0M2   A0A182XNY8  

Pubmed

19121390    22118469    23622113    28004739    28648823    24845553    + More
20075255    21347285    24508170    30249741    23537049    18362917    19820115    26334808    25474469    26823975    25401762    20566863    20798317    25348373    25830018    24495485    21292972    17510324    28528879    25765539    28797301    26830274    28049606    28503490    25576852    25244985    25315136   

EMBL

BABH01006286    ODYU01005501    SOQ46421.1    AGBW02009772    OWR49957.1    RSAL01000066    + More
RVE49393.1    NWSH01000145    PCG79081.1    GAIX01003381    JAA89179.1    GEZM01066357    JAV67927.1    NNAY01000278    OXU29540.1    KK853171    KDR10316.1    KZ288215    PBC32598.1    KQ414735    KOC62288.1    KQ977600    KYN01538.1    KQ981153    KYN08870.1    KQ976424    KYM88371.1    LBMM01002345    KMQ94949.1    KQ981906    KYN33282.1    ADTU01012803    GBYB01012106    JAG81873.1    KK107436    QOIP01000002    EZA50843.1    RLU25609.1    APGK01043767    KB741017    KB631644    ENN75259.1    ERL84943.1    KQ982548    KYQ55174.1    KQ971316    EEZ97825.1    GFTR01008575    JAW07851.1    GECL01003565    JAP02559.1    GBGD01000217    JAC88672.1    GBBI01002270    JAC16442.1    ACPB03023273    LJIG01016442    KRT80589.1    GDHC01016616    JAQ02013.1    GBHO01005168    GBHO01005167    GBRD01017930    JAG38436.1    JAG38437.1    JAG47897.1    GEDC01029409    JAS07889.1    AAZO01002829    DS235222    EEB13510.1    GL448143    EFN85248.1    AJVK01008652    AJWK01034446    AJWK01034447    GDHF01021272    JAI31042.1    GAKP01011529    JAC47423.1    GAKP01011528    JAC47424.1    GBXI01005265    JAD09027.1    GAMC01016988    JAB89567.1    NCKU01002089    NCKU01002074    RWS10456.1    RWS10492.1    NCKV01000789    RWS29734.1    GDIP01227667    JAI95734.1    GDIP01033889    JAM69826.1    GDIP01118173    JAL85541.1    GDIP01217965    GDIP01169215    GDIP01120272    GDIP01101180    GDIP01083078    GDIQ01036097    LRGB01000024    JAM20637.1    JAN58640.1    KZS21548.1    GDIP01106780    JAL96934.1    GL732583    EFX74403.1    CH477801    EAT36079.1    GANO01000661    JAB59210.1    GDIP01205370    JAJ18032.1    GDIP01203159    JAJ20243.1    GDIP01101179    JAM02536.1    GDIQ01172690    JAK79035.1    GDIQ01152606    JAK99119.1    GDIP01178962    JAJ44440.1    GDIQ01075687    JAN19050.1    GDIP01205371    JAJ18031.1    GDIP01114780    JAL88934.1    GGLE01006123    MBY10249.1    JXJN01028276    GFJQ02007680    JAV99289.1    GANP01011448    JAB73020.1    GDIQ01149607    JAL02119.1    GFPF01011276    MAA22422.1    GEDV01001974    JAP86583.1    GEFH01003321    JAP65260.1    GFAC01002930    JAT96258.1    GACK01005333    JAA59701.1    GGMS01016112    MBY85315.1    GFDL01011651    JAV23394.1    GFDL01011622    JAV23423.1    ABLF02026626    GGMR01019538    MBY32157.1    GFXV01007352    MBW19157.1    GGFL01003351    MBW67529.1    KA645880    AFP60509.1    DS232197    EDS37181.1    UFQS01000991    UFQT01000991    SSX08300.1    SSX28323.1    GGFK01001907    MBW35228.1    GGFJ01000958    MBW50099.1    GGFK01001860    MBW35181.1    AXCM01000086   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000215335    UP000027135    + More
UP000002358    UP000242457    UP000005203    UP000053825    UP000078542    UP000078492    UP000078540    UP000036403    UP000078541    UP000005205    UP000053097    UP000279307    UP000019118    UP000030742    UP000075809    UP000007266    UP000015103    UP000009046    UP000008237    UP000092462    UP000092461    UP000285301    UP000288716    UP000076858    UP000000305    UP000008820    UP000092460    UP000092443    UP000092445    UP000078200    UP000069272    UP000079169    UP000007819    UP000075884    UP000075880    UP000091820    UP000095300    UP000002320    UP000076408    UP000095301    UP000075900    UP000075883    UP000075902    UP000076407   

PRIDE

H9IWA9   

Pfam

PF04851   ResIII        + More
PF09416   UPF1_Zn_bind
PF13087   AAA_12
PF13086   AAA_11
PF18141   DUF5599
PF09848   DUF2075

Interpro

IPR041679   DNA2/NAM7-like_AAA        + More
IPR040812   DUF5599       
IPR018999   RNA-helicase_UPF1_UPF2-interct       
IPR027417   P-loop_NTPase       
IPR041677   DNA2/NAM7_AAA_11       
IPR006935   Helicase/UvrB_N       
IPR018647   DUF2075       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

H9IWA9   A0A2H1W000   A0A212F892   A0A437BGB7   A0A2A4K495   S4PE18   + More
A0A1Y1LA15   A0A232FG91   A0A067QZ49   K7INP6   A0A2A3ELK0   A0A088A104   A0A0L7QUG9   A0A195CLG1   A0A195D7K7   A0A195BQY4   A0A0J7KXE5   A0A195EZE6   A0A158NDR3   A0A0C9RWD7   A0A026W4A1   N6T516   A0A151X4G6   D6WCA6   A0A224XII3   A0A0V0G5D2   A0A069DY54   A0A023F5K8   T1HV29   A0A0T6B0G5   A0A146L082   A0A0A9YZI2   A0A1B6C3L5   E0VJF4   E2BGD3   A0A1B0GQS5   A0A1B0F064   A0A0K8UWJ1   A0A034W0V7   A0A034VYB5   A0A0A1XDI6   W8ATN6   A0A3S3PYI0   A0A443SQE1   A0A0P4YLQ8   A0A0P6A6I4   A0A0P5U449   A0A0P5WRY4   A0A0P5V5B8   E9H192   Q16NZ5   A0A1S4FUT2   U5EZJ9   A0A0P5A1M8   A0A0P5B984   A0A0P5VDU0   A0A0P5LAM3   A0A0P5N950   A0A0P5BWE5   A0A0P6EGB6   A0A0P5ADA3   A0A0P5UM32   A0A2R5LL81   A0A1B0AKT5   A0A1A9XX42   A0A1Z5KW56   A0A1A9ZK15   V5GRL0   A0A0P5NF99   A0A1A9VS24   A0A224Z7N9   A0A131Z5A5   A0A131XGM4   A0A1E1XAI5   A0A2C9GGV3   A0A3Q0IZ16   L7M5Y4   A0A2S2R5P3   A0A1Q3F754   A0A1Q3F7E0   J9K5W5   A0A2S2PS06   A0A182NR05   A0A182JG24   A0A1A9W307   A0A2H8TY30   A0A2M4CQH5   A0A1I8PHH0   T1PCL1   B0WYS1   A0A182YNB3   A0A336KT50   A0A1I8NDC1   A0A2M4A3L2   A0A2M4BAN4   A0A2M4A358   A0A182RG13   A0A182MS50   A0A182U0M2   A0A182XNY8  

PDB

2WJY     E-value=0,     Score=3368

KEGG

101738312    K14326 regulator of nonsense transcripts 1 [EC:3.6.4.-] | (RefSeq) regulator of nonsense transcripts

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0000184   GO:0008270   GO:0005524   GO:0004386   GO:0003677   GO:0005737   GO:0003723   GO:0004004   GO:0016787   GO:0004190   GO:0006508   GO:0016286  

Length:

1032

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000780000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1  -  1032

 

 

Pi

215.384084

Theta

184.723205

Tajima's D

0.042023

CLR

139.591227

CSRT

0.383880805959702

Interpretation

Uncertain