SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12585
Pre Gene Modal
BGIBMGA001435
Annotation
PREDICTED:_A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_7_[Papilio_xuthus]
Location
Bomo_Chr21(-):8474113-8574725      View in EpiBrowser
Location in the cell
Extracellular   Reliability : 1.859 Nuclear   Reliability : 2.418
 

Sequence

CDS
ATGCGCGCGAGTGAATCTCGGGTGCTCAACAAGATGGAAGTGCGGTGTTCATTGTTCAAACTCTTGCTTTTCCAAATGCTGGTAGCGTGGTGCGACGCGAAGCACGTCTGGACTGATGACATGACGAGAGTGGAGCTTGGTTCCGACGACGTTAACCGAGAAGTCCAGGATAGCATAGATACATTTATGCACACTGGTATCTACTCCCATCGACACCTGGATACGTCGCAGGTGCAAGTGGTGCGCCCGTTGAAAGTGACCCGTGATGGTGAGCTGGTCTCCCACGTGGTGGATCACTCCCACGAACACGGGCACGCGAGGGCGCGCCGTGACCTGCATCACACGGAGCATCTGCAGCCGCACTCTCTTCACTATAACCTCACCGTTGACGGCAGACAAATCAGGCTGGACCTAAGGCCGTCGGTGACATTCATTACTCCCGCAATGGTAGTGGAGCGACACAGCGAGCGCGGGCGCACGCGAGAACAGCCGAGGATCGAAGCCACGGCCTGCCACTACACGGGCTCTGTACGCGGACAGCCTGCATCCAGCGTAGCTCTTTCTGCTTGTGATGGACTTGCGGGCTTATTAAGGACAGAACAGGGTGAATATTGGATTGAACCTTCTACCCAAAAACCGTCTGATAATTCAGAAGGAAGACCACACGTTATTTTCAAACGATCAGCAGTAGACAAGGTTGCAGCATATCATAGAGCAAAAAGGGCTGTAGATAAAAATACCAATACCAACAGCAAAGTTAATCATGATAAAGACACCCAGAGATACACCAGCCAACACGCGAATCTCAGAAATTACCGTGAAAGTAAAGAAGAGAGAGACAGACAACGTAGGGAATATTTAGAACAGAGACAAAAAAGACTAGAGGCTATGAGGCGTAACCCTGTCGAATATAGAAGACAACAATCAAATTTACGAATGGAAGAAAGAAGAATGCACACGTATCCGAAAAGCAATTCGATTGAAGGTAGCAGATCATTGCATTCAAATCAGGGCCGTAAAAGAAATCAAAACAAAAGTGAAAGGCGATTGCGACGTAAACACCGAAGAAGAAGGAAACGTGCCGCGAAAAACTGTGGTACACGACAGCCGCCTTATCAATGGAAGCAAAAAAAACTTCACACTTCCGAGTTAGACGACAACAAGAAATACCGCTATAATAAGAACAACCGGTATAGCCGCCATCATCCAACCCGCTACAATTTAGACCCAAACAGGCGAGCGCCTCGTTCCGTGAGCAAGCCGCGGCACGTTGAGGTTTTACTCGTCGCAGACAAATCCATGTCGGAGTTCCACGACCAAGACAGCTTGGAAATTTACTTGTTGACTATAATGAATATGGTATCTTCTCTGTATATGGATCCGTCGATTGGAAACTACATTAAAGTGGTCGTTGTAAAAATTATCCTTGTCGAAGAGTTAGCTGCCGCACAGGAGCTAGAAGTGTCTACGAATGCTGATTCGACACTCGCATCCTTCTGCCGTTGGCAAGAGCAATTGAACCCAGACAACGATACAAACCCGCATCACCATGATGTCGCTATTTTAGTTACAAGACGCGACATCTGCAGCCAGCACGATTCTCCTTGTAGTACTTTGGGTGTAGCACACGTAGCGGGTATGTGCAAGCCGGACCGCAGCTGTTCTGTGAACGAAGACAACGGAATAATGCTCGCTCACACAATTACACACGAGCTGGGACACAATTTCGGTCTTTATCACGACACCGAAAAGATAGGCTGCCAAAGACGCGTGGGCTCCACACTGCACATCATGACACCTATATTTGAAGCAGACACCGTACAAGTAGCCTGGTCGCGTTGTAGTAAGCGAGACGTCACCAATTTCTTGGACGCCGGTTTGGGTGAATGTTTGAGCGACAGACCATCACAAGACGAATACGTGTATCCAGAAGTACCAGCTGGCGTAATGTTTGATGCGGCTTCACAATGTCACCTGCAGTTCGGCGCGGAAGCCGGCCTATGTTCTAAGCTGTCAGAGTTATGCGAACACCTATGGTGTCTGGTTGACAATGTGTGTACTACTATGATGCGTCCTGCAGCACCTGGCACCACTTGCGGACCCGATATGTGGTGTCAGAATCAGACCTGTGTGGCTCGGACTCCTTCACCGGCGCCTCGAGACGGCGGTTGGGGTCCATGGAGCGAGTGGAGTGAATGTTCTAGAACTTGCGGCGCTGGAGTATCCACCCAGTCGAGGGAATGCAATAACCCGGAGCCAGTCAATAATGGAAACTATTGTATTGGAGATCGTAGCAGGTACAAAGTGTGCAACACGGATCCGTGCCCTATCAACGAACCGTCATTCAGGGAAGTTCAGTGCTCCAGGCACAATAACATGCCATATAAGAATGAAACTATAGATGAATGGGTTCCCTACTTTGATCAAGATAAACCTTGCGAGTTACAATGCGTGCCGCGCGATGGTACTGATGTGGAGATGTTGGGAGGATTCGTCGCAGACGGTACTCCTTGCAGGCAAGCGATCGGGTCGCGGGACATGTGCATTTCTGGTGTGTGCTACAAAGTAGGTTGCGATTGGATTGTTGATTCTGACGTTGAAGAAGACGCATGCGGCGTCTGTGGGGGCGACGGAACAGCATGTAAAACTGTGCAAGGGATTTACACGAAAGGCACAACTAGACAATCAGGATTCAGTGAGGTTGCAATTATACCGGCAGGTTCGAGGAACGTGAAAATACAAGAGAAAGTTAGCCCTGGAAATTATATTTCGATCGGAAGTACAAAATCGAGAAGAATGTTTCTTAATGGAGCTCGAAACGCCACGTTGACGGAGTACTTCGTGGCTGGAGCTCAAGCTATTTACGAACGAGACCGTGACTGGGAAAAAGTTCGAATATCGGGACCGCTCGCCGAAGATATAAAAGTTTATCAACGTATATTCCGAGGACGACATCGCAACCCCGGCGTCACATACCAGTACACGGTCGACAAACAAAGACTTCACAAGAAACACAGCTACAGACTGTCCGAATGGACGCCGTGCTCCGTCACCTGCGGAGTTGGATACACGAGAAGATATTACGAATGCATTGATCAACATCAACGAGTGGTAGAACAATCCCAGTGCTACCACATCGAGCCGCCGCGACACCAGGCCCTCATGAAGCAGTGCAGGAAGCCGGCGTGCGTCCACTGGTGGGTCGGCGCGTGGAACCCTTGCTCTAAGCTTTGCCACATGCCGGGCGAGGAAGTCACTAAAGAACGCAGCGTGTACTGCGTCGATAAAGTAATGAACAAAGTAGTCGATGACAGCGAATGCGGCCAAGTGATTAAACCAATAACGACCATTAAATGTGCGGACGTGCCTGCGTGCTAA
Protein
MRASESRVLNKMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQDSIDTFMHTGIYSHRHLDTSQVQVVRPLKVTRDGELVSHVVDHSHEHGHARARRDLHHTEHLQPHSLHYNLTVDGRQIRLDLRPSVTFITPAMVVERHSERGRTREQPRIEATACHYTGSVRGQPASSVALSACDGLAGLLRTEQGEYWIEPSTQKPSDNSEGRPHVIFKRSAVDKVAAYHRAKRAVDKNTNTNSKVNHDKDTQRYTSQHANLRNYRESKEERDRQRREYLEQRQKRLEAMRRNPVEYRRQQSNLRMEERRMHTYPKSNSIEGSRSLHSNQGRKRNQNKSERRLRRKHRRRRKRAAKNCGTRQPPYQWKQKKLHTSELDDNKKYRYNKNNRYSRHHPTRYNLDPNRRAPRSVSKPRHVEVLLVADKSMSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNYIKVVVVKIILVEELAAAQELEVSTNADSTLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDICSQHDSPCSTLGVAHVAGMCKPDRSCSVNEDNGIMLAHTITHELGHNFGLYHDTEKIGCQRRVGSTLHIMTPIFEADTVQVAWSRCSKRDVTNFLDAGLGECLSDRPSQDEYVYPEVPAGVMFDAASQCHLQFGAEAGLCSKLSELCEHLWCLVDNVCTTMMRPAAPGTTCGPDMWCQNQTCVARTPSPAPRDGGWGPWSEWSECSRTCGAGVSTQSRECNNPEPVNNGNYCIGDRSRYKVCNTDPCPINEPSFREVQCSRHNNMPYKNETIDEWVPYFDQDKPCELQCVPRDGTDVEMLGGFVADGTPCRQAIGSRDMCISGVCYKVGCDWIVDSDVEEDACGVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQEKVSPGNYISIGSTKSRRMFLNGARNATLTEYFVAGAQAIYERDRDWEKVRISGPLAEDIKVYQRIFRGRHRNPGVTYQYTVDKQRLHKKHSYRLSEWTPCSVTCGVGYTRRYYECIDQHQRVVEQSQCYHIEPPRHQALMKQCRKPACVHWWVGAWNPCSKLCHMPGEEVTKERSVYCVDKVMNKVVDDSECGQVIKPITTIKCADVPAC

Summary

Uniprot
A0A194PYI4   A0A212EWT1   A0A194RPF1   A0A2A4K378   A0A0M8ZXU5   A0A034VDU6   + More
Pubmed
26354079    22118469    25348373   
EMBL
KQ459585    KPI98397.1    AGBW02011934    OWR45894.1    KQ459896    KPJ19387.1    + More
NWSH01000211    PCG78354.1    KQ435822    KOX72276.1    GAKP01018290    GAKP01018283    GAKP01018279    GAKP01018275    JAC40669.1   
Proteomes
UP000053268    UP000007151    UP000053240    UP000218220    UP000053105   
Pfam
PF01562   Pep_M12B_propep        + More
PF05986   ADAM_spacer1
PF00090   TSP_1
PF17771   ADAM_CR_2
PF01421   Reprolysin
Interpro
IPR036383   TSP1_rpt_sf        + More
IPR000884   TSP1_rpt       
IPR001590   Peptidase_M12B       
IPR010294   ADAM_spacer1       
IPR002870   Peptidase_M12B_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR013273   ADAMTS/ADAMTS-like       
IPR041645   ADAM_CR_2       
IPR006586   ADAM_Cys-rich       
SUPFAM
SSF82895   SSF82895       
Gene 3D
2.20.100.10     3.40.390.10    
ProteinModelPortal
A0A194PYI4   A0A212EWT1   A0A194RPF1   A0A2A4K378   A0A0M8ZXU5   A0A034VDU6   + More
PDB
2RJQ     E-value=1.39636e-71,     Score=690

Ontologies

KEGG
101741678    no KO assigned | (RefSeq) A disintegrin and metalloproteinase with thrombospondin motifs 7
GO
GO:0007229   GO:0004222   GO:0005578   GO:0008237   GO:0008270   GO:0006508   GO:0031012   GO:0015074   GO:0004190   GO:0016286  

Topology

SignalP
Position:   1 - 33,         Likelihood:  0.843732
 
 
Length:
1125
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.32854
Exp number, first 60 AAs:
0.32592
Total prob of N-in:
0.01723
outside
1  -  1125
 
 

Population Genetic Test Statistics

Pi
184.953278
Theta
166.142201
Tajima's D
0.329285
CLR
0.808764
CSRT
0.456677166141693
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号