Gene

KWMTBOMO12581  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001537

Annotation

28S_ribosomal_protein_S30?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr21(+):8444216-8449601      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.227 Mitochondrial   Reliability : 1.539 Nuclear   Reliability : 1.293

CDS

ATGCATATAATTAAATTACACCGATCATTATTGAAAATAAAGAATGCCATTCCAAGATACTCTACTATTACGGCTCTTGAAGAAAGTGAATACACCGAGACACCGGAGTATCCCCCTATACTGGATATGACTCGGGAAGGAAAATTATTGCGTCGAAGACAAAGTTTTCAAAGCAAAATACAAGAACTAAACACGATAGAAGAGAAACAAATAGCCTTAAATATGCCTCGTTATTATGGATGGCAGTGTATAATGTTGAACAATGATAAAGTTCCGTACAACGCAATGCCCTTAGTACAGTATTATACTAGGAGTCATTTCATACCGGTCGCTAAACTTCCGGAAGCATACAATGAAATCGAACAACAAGCTAGTAATATTCTTCAAGAAATCAAACCACAAATAGAAGATGCCATAGCTATTGAATTAACTGATGTTGAGAGGAACTTCAAATTCTTACAAGATAAATCTATAAAAATGCAACAAGAAGATACAATTACAAAATGTGTTGTGAGACAAATAAACAGAATTATAATGAACAATCTCAGTGATAACTTGCCTCATATTTTGTCAACACAGATTGATTATGATGCTCGTCATGAAGCATTTTGGCATATTGGTGGTGTTGATCCCCCGACCACAACAGTAAAATGGCGAAAAGAAAATAAATGGCCAAAAAGTACACATTATGAAAGTACAGATAGGCCTGTGCAATATATTGGGTCACCAATACTAACTCTGAGAAATCGCCACCCACTAAAGCCGCTGATCCCATATAGTGAAGCAGAGAATCCGGCATTCAAAGTTGATAAGTTTACTACTATACCTGGCAGTGTTGGTTACTTTCGTGAATTTCGTCATGGAACTAATATACCAGGTTTTTGGCCAGGAGATATAGATGAATTCGGTTTATTGTCATACCATGGTCGTGGTCATATACTAGACAGGAAAACGTCATTTGGCGAGCAAGATAATATTGAGGCGTTACACTGTCAAGCAATGAAAGCTAGCTTTGGTTGGTTATTAGCTCAAGCAAATTATCAAGGTTTCACCACATTCAATGATTTGACGTACCCACTTGTGACACAAACCGTGATCACTAATGGTAAACTTTGGTCTTTGTATGCATACCAATTAAATACAATTGTTATGCATAATGATACGGTAGACAGTAATCCCAAACATAACATATGTTTCGGGACGAAACCTCTTCAATTGTATGAAACGATTGAGAATGGAAAAGTGCTTGGTCTGAATGAAGACGTCCTAATAATGTTACTGCAGTTCTACATGAATGCACCGGTAGAGCGCGATCATGCAATGAAACCATATTTAGGTAAAGATGAAAAGGTGATAGCCGATATTGAAGATGACAATAGGCGCTGTTGGTTAGAGGAGAGGTACAAGTATTTAGTGTCTAACAGACCCAAACATAGTCTGATACCTGAAGTCTACCTTTGGGAAAAAATATACAAGATTCAACATAATACAAGATTCTTTGAAGCGAAAAGGAGGCCATTTGAGCGTGGAATCAATCCCTTCAATAGAAGATTAGATGATCATATATCACCTTACATACCCAAAGTACTCAGGGAATATCCCAGAAGCAAAAAGAAGTTTGAAGCAACATACTACCCTGAAGTTTGA

Protein

MHIIKLHRSLLKIKNAIPRYSTITALEESEYTETPEYPPILDMTREGKLLRRRQSFQSKIQELNTIEEKQIALNMPRYYGWQCIMLNNDKVPYNAMPLVQYYTRSHFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARHEAFWHIGGVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIGSPILTLRNRHPLKPLIPYSEAENPAFKVDKFTTIPGSVGYFREFRHGTNIPGFWPGDIDEFGLLSYHGRGHILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVERDHAMKPYLGKDEKVIADIEDDNRRCWLEERYKYLVSNRPKHSLIPEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFEATYYPEV

Uniprot

H9IWA6   A0A2A4K3Y3   A0A2H1VLT3   A0A194PZG0   A0A194RPF7   A0A1E1VY78   + More
A0A212EWL0   A0A067R2A7   A0A2J7R262   A0A182RG12   A0A182VW83   A0A182YNB4   A0A182QUW5   A0A182NR04   A0A182MWG8   A0A195CLH6   A0A0K8TKG0   A0A182FRZ2   A0A151WMT3   A0A2M4BJ43   A0A2M4AIY5   W5J6Z7   A0A182UXQ3   A0A2M4AHX2   A0A084W073   A0A182UCV3   D6WCM7   A0A0L7QN17   A0A182IV80   A0A195EDZ3   F4X219   A0A026WNJ2   A0A182JRH0   A0A182G4Q7   A0A151JXG1   A0A182PR67   A0A182HK35   A0A1Q3F6Q2   A0A2Y9D1D2   A0A1W4WMJ6   Q7PUT8   A0A1S4GB15   A0A158NXR9   A0A0J7KW12   B0WYS2   A0A1J1IDH7   A0A195B0D7   Q16NZ6   A0A1S4FUE6   E2C4A5   A0A1B0CGP4   A0A2A3EKU5   A0A1B0CZF0   A0A0C9R2E5   A0A232FDR0   U4UB58   J3JVY3   A0A154P4Q6   K7J1R8   A0A1L8E004   A0A088APH0   A0A1B6ICP4   A0A1L8E089   A0A2P8YAT6   A0A0N0BIN9   A0A1B6C0F5   A0A1A9W313   A0A034W8W1   Q9VXP3   A0A1B6LLN1   A0A1A9ZK16   A0A1I8P4J6   D3TMJ0   A0A1B0B5Y3   W8C020   A0A1B0FQS8   A0A1A9XLJ6   A0A0K8W4P1   A0A1I8MAF7   A0A0A1WMG0   A0A1Y1M8U9   B3NXK0   B4R5I3   B4PX69   A0A182XNY9   A0A1W4V3M6   A0A0L0BNL0   B4MGD3   B4L7L8   J9K2U1   A0A2H8TF83   A0A1A9VU90   Q29CP7   B4JJS3   A0A2S2QWD4   A0A3B0KDX2  

Pubmed

19121390    26354079    22118469    24845553    25244985    26369729    + More
20920257    23761445    24438588    18362917    19820115    21719571    24508170    30249741    26483478    20966253    12364791    21347285    17510324    20798317    28648823    23537049    22516182    20075255    29403074    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20353571    24495485    25315136    25830018    28004739    17994087    17550304    26108605    15632085    23185243   

EMBL

BABH01006272    NWSH01000211    PCG78362.1    ODYU01003259    SOQ41777.1    KQ459585    + More
KPI98428.1    KQ459896    KPJ19392.1    GDQN01011368    JAT79686.1    AGBW02011934    OWR45890.1    KK852805    KDR16108.1    NEVH01008200    PNF34927.1    AXCN02001485    AXCM01000086    KQ977622    KYN01327.1    GDAI01002766    JAI14837.1    KQ982934    KYQ49130.1    GGFJ01003883    MBW53024.1    GGFK01007425    MBW40746.1    ADMH02002101    ETN59173.1    GGFK01007053    MBW40374.1    ATLV01019092    KE525262    KFB43617.1    KQ971317    EEZ98800.1    KQ414868    KOC59954.1    KQ979074    KYN23064.1    GL888561    EGI59501.1    KK107159    QOIP01000001    EZA56664.1    RLU27087.1    JXUM01042638    KQ561332    KXJ78947.1    KQ981614    KYN39304.1    APCN01000816    GFDL01011852    JAV23193.1    AAAB01008987    EAA01009.5    ADTU01003455    LBMM01002712    KMQ94449.1    DS232197    EDS37182.1    CVRI01000047    CRK97810.1    KQ976692    KYM77669.1    CH477801    EAT36078.1    GL452434    EFN77238.1    AJWK01011503    KZ288219    PBC32338.1    AJVK01020712    GBYB01001036    JAG70803.1    NNAY01000427    OXU28477.1    KB631924    ERL87195.1    APGK01055124    BT127401    KB741259    AEE62363.1    ENN71725.1    KQ434814    KZC06833.1    GFDF01001996    JAV12088.1    GECU01023010    JAS84696.1    GFDF01001997    JAV12087.1    PYGN01000748    PSN41370.1    KQ435728    KOX77822.1    GEDC01030312    JAS06986.1    GAKP01008235    JAC50717.1    AE014298    AY122095    AAF48515.1    AAM52607.1    AHN59767.1    GEBQ01015335    JAT24642.1    EZ422642    ADD18918.1    JXJN01008910    GAMC01011626    JAB94929.1    CCAG010006144    GDHF01006280    JAI46034.1    GBXI01014592    JAC99699.1    GEZM01042645    JAV79747.1    CH954180    EDV46959.2    CM000366    EDX18028.1    CM000162    EDX01832.1    JRES01001701    KNC20839.1    CH940672    EDW57456.1    CH933814    EDW05731.1    ABLF02035549    GFXV01000939    MBW12744.1    CH475438    EAL29270.1    KRT05170.1    CH916370    EDV99825.1    GGMS01012874    MBY82077.1    OUUW01000011    SPP86490.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000027135    + More
UP000235965    UP000075900    UP000075920    UP000076408    UP000075886    UP000075884    UP000075883    UP000078542    UP000069272    UP000075809    UP000000673    UP000075903    UP000030765    UP000075902    UP000007266    UP000053825    UP000075880    UP000078492    UP000007755    UP000053097    UP000279307    UP000075881    UP000069940    UP000249989    UP000078541    UP000075885    UP000075840    UP000075882    UP000192223    UP000007062    UP000005205    UP000036403    UP000002320    UP000183832    UP000078540    UP000008820    UP000008237    UP000092461    UP000242457    UP000092462    UP000215335    UP000030742    UP000019118    UP000076502    UP000002358    UP000005203    UP000245037    UP000053105    UP000091820    UP000000803    UP000092445    UP000095300    UP000092460    UP000092444    UP000092443    UP000095301    UP000008711    UP000000304    UP000002282    UP000076407    UP000192221    UP000037069    UP000008792    UP000009192    UP000007819    UP000078200    UP000001819    UP000001070    UP000268350   

PRIDE

H9IWA6    Q9VXP3   

Pfam

PF07147   PDCD9        + More
PF04762   IKI3
PF00749   tRNA-synt_1c

Interpro

IPR010793   Ribosomal_L37/S30        + More
IPR039982   MRPS30       
IPR006849   Elp1       
IPR014729   Rossmann-like_a/b/a_fold       
IPR000924   Glu/Gln-tRNA-synth       
IPR020058   Glu/Gln-tRNA-synth_Ib_cat-dom       
IPR033910   GluRS_core       
IPR020751   aa-tRNA-synth_I_codon-bd_sub2       
IPR008925   aa-tRNA-synth_I_codon-bd       
IPR001412   aa-tRNA-synth_I_CS       

SUPFAM

SSF48163   SSF48163       

Gene 3D

1.10.10.350     3.40.50.620    

CDD

cd00808  GluRS_core

ProteinModelPortal

H9IWA6   A0A2A4K3Y3   A0A2H1VLT3   A0A194PZG0   A0A194RPF7   A0A1E1VY78   + More
A0A212EWL0   A0A067R2A7   A0A2J7R262   A0A182RG12   A0A182VW83   A0A182YNB4   A0A182QUW5   A0A182NR04   A0A182MWG8   A0A195CLH6   A0A0K8TKG0   A0A182FRZ2   A0A151WMT3   A0A2M4BJ43   A0A2M4AIY5   W5J6Z7   A0A182UXQ3   A0A2M4AHX2   A0A084W073   A0A182UCV3   D6WCM7   A0A0L7QN17   A0A182IV80   A0A195EDZ3   F4X219   A0A026WNJ2   A0A182JRH0   A0A182G4Q7   A0A151JXG1   A0A182PR67   A0A182HK35   A0A1Q3F6Q2   A0A2Y9D1D2   A0A1W4WMJ6   Q7PUT8   A0A1S4GB15   A0A158NXR9   A0A0J7KW12   B0WYS2   A0A1J1IDH7   A0A195B0D7   Q16NZ6   A0A1S4FUE6   E2C4A5   A0A1B0CGP4   A0A2A3EKU5   A0A1B0CZF0   A0A0C9R2E5   A0A232FDR0   U4UB58   J3JVY3   A0A154P4Q6   K7J1R8   A0A1L8E004   A0A088APH0   A0A1B6ICP4   A0A1L8E089   A0A2P8YAT6   A0A0N0BIN9   A0A1B6C0F5   A0A1A9W313   A0A034W8W1   Q9VXP3   A0A1B6LLN1   A0A1A9ZK16   A0A1I8P4J6   D3TMJ0   A0A1B0B5Y3   W8C020   A0A1B0FQS8   A0A1A9XLJ6   A0A0K8W4P1   A0A1I8MAF7   A0A0A1WMG0   A0A1Y1M8U9   B3NXK0   B4R5I3   B4PX69   A0A182XNY9   A0A1W4V3M6   A0A0L0BNL0   B4MGD3   B4L7L8   J9K2U1   A0A2H8TF83   A0A1A9VU90   Q29CP7   B4JJS3   A0A2S2QWD4   A0A3B0KDX2  

PDB

6NU3     E-value=1.3012e-22,     Score=264

KEGG

101737548    K17409 small subunit ribosomal protein S30 | (RefSeq) 28S ribosomal protein S30, mitochondrial

GO

GO:0005739   GO:0006412   GO:0003735   GO:0005840   GO:0002098   GO:0033588   GO:0005762   GO:0004812   GO:0006424   GO:0005524   GO:0000049   GO:0008270   GO:0032543   GO:0005763   GO:0015269   GO:0016021   GO:0015074   GO:0004190   GO:0006508   GO:0016286  

PANTHER

PTHR13014   PTHR12747  

Length:

548

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00598999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00102

outside

1  -  548

 

 

Pi

159.979346

Theta

170.153169

Tajima's D

-1.481409

CLR

1.579612

CSRT

0.0620468976551172

Interpretation

Uncertain