The Silkworm Genome Information Database

Gene

KWMTBOMO12578

Pre Gene Modal

BGIBMGA001438

Annotation

PREDICTED:_microfibrillar-associated_protein_1_[Amyelois_transitella]

Location

Bomo_Chr21(-):8421603-8437705 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.949

CDS

ATGAATGTCCTACCAGCACAACCTACAGGCATTCAGAGTACAGCGGGAGCAATTCCGATAAGAAATGAAAAAGGTGAGATCTCGATGCAAAAGGTGAAAGTTCAGCGATACATATCTGGAAAAAAGCCTGACTATGCACAAGGAATGTCATCATCTGAGGAATCAGATGAAGAAGATTTTATAGAGCAACAAAGACCTGAACGGAAACAAGTTTTACCTCAAATAATCACCCGCAAAGAAGAACATCATAGCGATTCTGAGAAAGAGGTTGATGATCCTCGATTACGACGTCTCCGTAATATTGCACAATCACCGCCGCGTAGAGCCGAACACAAGCCTGAAATTATTGATGCAGAACCTGAAGCAGAATCTGAGATCAGTGATCATGACGTGAGGGATAGTTCCGAGAGTGAAGATGAACTGGATGAGGAAGAGATTGAAAGACGCAGACAGGCTCTAAGAGCAAAACTTGCAGCCAGGGAAGCTGAAAAAGAAGTACTCGGTAGAGATGAAGATGAAGAAATGTTGGAAGGTGACAAAGAGGAAAGCGGCTCATCAGACACAGAGTACACAGACAGTGAAGAAGATACTGGGCCAAGGGTGAAACCAGTATTTGTAAGAGCATCGGAGCGTATGACAGTGGCAGAGAGAGAACGTAAAATGAAACAGCAGAAAAGAGAAGAGGCTGAAGCTCGGAAAGAAAAAGAAGAAAGGCGACGGGAAGCCCTTAAATTAGTAGAGGAAACGATTCGGTCTGAACAGCGGGGTGCTCAGGGAGAACAAAAAGAAGGGAATATAAATGATGTATGTACAGATGATGAAAATGACGAACTGGAATATGAAGCTTGGAAGTTGCGTGAAATGAAACGTATCAAACGAGATAAAGAAGAAAGGGAAGCAGCCGAAAAAGAGATGTTAACTCTGGAACGATTACGCAACATGACCGAAGATGAGCGACGCCTCGAACAACGTATCAATCCAAAGGTTGTCACAAATAAAGCAGTCAAAGGAAAATACAAGTTTCTGCAGAAATATTATCACAGAGGTGCCTTTTATTTGGATAAAGAAGAAGATGTTTTCAAACAGGACTTCTCGGGTCCTACGCTGGATGATCATTTTGACAAGACAGTTTTACCAAAGGTTATGCAAGTCAAGAAGTTTGGACGTTCCGGTCGTACGAAGTACACACATTTGGTCGATCAAGACACTACGGAGTTCGATTCCGCTTGGAGCAATGAAACCTCAGCAGCCAGACTGACTAACTTCCGCGGGGGAATGAAACAAGTATTCGAGAAACCTTCGGCGAAGAGGAAGCACAATGTTTGA

Protein

MNVLPAQPTGIQSTAGAIPIRNEKGEISMQKVKVQRYISGKKPDYAQGMSSSEESDEEDFIEQQRPERKQVLPQIITRKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKPEIIDAEPEAESEISDHDVRDSSESEDELDEEEIERRRQALRAKLAAREAEKEVLGRDEDEEMLEGDKEESGSSDTEYTDSEEDTGPRVKPVFVRASERMTVAERERKMKQQKREEAEARKEKEERRREALKLVEETIRSEQRGAQGEQKEGNINDVCTDDENDELEYEAWKLREMKRIKRDKEEREAAEKEMLTLERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFRGGMKQVFEKPSAKRKHNV

Uniprot

H9IW07 A0A2A4K278 A0A2H1VLS6 S4PZV5 A0A437AZH8 A0A212F5I0 + More
A0A194RDR4 A0A194Q3U5 A0A0L7RBW5 A0A2A3E7U6 A0A088AC02 A0A026WZM3 A0A154PGK6 E0VWJ6 A0A1A9WCR5 A0A3L8DQ43

Pubmed

19121390 23622113 22118469 26354079 24508170 20566863 + More
30249741

EMBL

BABH01006271 NWSH01000211 PCG78365.1 ODYU01003259 SOQ41780.1 GAIX01000878 + More
JAA91682.1 RSAL01000244 RVE43602.1 AGBW02010197 OWR48984.1 KQ460325 KPJ15747.1 KQ459564 KPI99679.1 KQ414617 KOC68323.1 KZ288338 PBC27817.1 KK107063 EZA61176.1 KQ434899 KZC10937.1 DS235822 EEB17752.1 QOIP01000005 RLU22353.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More
UP000053825 UP000242457 UP000005203 UP000053097 UP000076502 UP000009046 UP000091820 UP000279307

PRIDE

H9IW07

Pfam

PF06991 MFAP1 + More
PF00400 WD40

Interpro

IPR009730   MFAP1_C        + More
IPR033194   MFAP1
IPR017986   WD40_repeat_dom
IPR001680   WD40_repeat
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR019775   WD40_repeat_CS
IPR036322   WD40_repeat_dom_sf
IPR032847   PRPF17

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

H9IW07 A0A2A4K278 A0A2H1VLS6 S4PZV5 A0A437AZH8 A0A212F5I0 + More
A0A194RDR4 A0A194Q3U5 A0A0L7RBW5 A0A2A3E7U6 A0A088AC02 A0A026WZM3 A0A154PGK6 E0VWJ6 A0A1A9WCR5 A0A3L8DQ43

PDB

6AHD E-value=3.03316e-56, Score=553

KEGG

101737405 K13110 microfibrillar-associated protein 1 | (RefSeq) microfibrillar-associated protein 1

GO

PANTHER

PTHR15327 PTHR43979

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00240

outside

1 - 441

Pi

183.413732

Theta

183.738248

Tajima's D

-0.869228

CLR

0.165249

CSRT

0.167691615419229

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics