Silkworm Genome Informatics Database

Gene

KWMTBOMO12572

Pre Gene Modal

BGIBMGA001530

Annotation

PREDICTED:_small_conductance_calcium-activated_potassium_channel_protein_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr21(+):7734721-7758262 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.953

CDS

ATGGCGGAGAATTTTAGACGAGCATACGGCCCACCTGATGGTGAGTGGTTACCGTCGCCCATGGACTTCAGCAATGCCAGAGGCAGGGCCAAGCCGCTGCCTACCGCTGCAATTGCAGCCTATCGAATTGCAAACGGATTAAGCTTAGGATCCGCATTGACAGAATACTTCGGTGTATTTCAGCTGCGAAAGCCGGTGTCGACACTCTCGATCCCGGGTGCGATGAAGGCTTACTCCGGCGGGGGGCGGGACGCGAGCGGGGAGGAGGCAGGCGTAGCTCTAGTTGGCGTTCACAGCGAGTATCCACGCTTCGGAGAAGAACGGGCTCTGGGCGGCGGCACGTACAAAGGCGGAGGGACAGCCAAGCACAAACCCAACATAGGATATAGCTGGAAGTTTCGATTGAGATGTCTATTAGACGAAAAATCTTTGTTAGAGGTAGCGTCAAGTGGCGTTATAGAATTAAAACAAAAAACTGCTGATGCGGCTGCAAAAGCCTTAATAGTAAAATGTGTACCCGATAAGTACTTGGACATCATAAAAGATGCAACAACTAGCTACACAATGTTAGCCAGTCTGGATAAAGTTTTTGAGAGAAAAGGTATTTTCACTAAATTACACTTGCGAAGAAAGTTATTGTCTCTTAAGCTGAGGGATGATAAATTGGAAGACTATTTCATGAGATTTGAAAGTCTGATTAGAGAAATAGAAAATATTGATAAAAAGATGGATGAAGAAGATAAAATATGTTATTTGCTGACGGGTATGTCGGAAAAGTACAACACAGTGATAACTGCTATTGAAACAATGTCTGCAGATAAAATTGACATGGAGTTTGTCAAGGCTCGGTTATTGGACGAAGAACTCAAACTGAATAATAAAGGTGAAGAGTATAATGATACAAAGAATGATGTAAGTTTTACTGCCTCAAGTGTAGAATGTTATCGTTGCCACAAAAAGGGCCATTTTGCACGTGAATGTAGAAGCAGAGGTGGCTATTCAAGGAGAAACATTAATAATAAAGGTATATGTGGTAAAAACAGAACTGGAGAACAAAATAATATGACAGAAAGCATCCCAGAGAATAAATATAATTTTCTAGCAATAACGGAGTGTAATCTAAGTAGAGAAGACAAATTTATAGAATTTATAATAGATTCAGGAGCTACAGAAAATCTTATCAAGGAAGAATTAGAGAAATACATGTATGAAATTAAAAAACTACCAGATAAAATAAAAATTAAGATTGCAAATGGAGAAATATTAGAGGCTGACAAGAAAGGAAAGATAACCATAAGAGATAAAAATAATAATACTATAAATATAGAAGCGTTAATGGTCCCAGGGATTTATCATAATATAATATCTGTAAGAAACTTAAATATGAAAGGAAATAAAGTTGTTTTTACAAAATTTGGAGCACAAATAATAAATGGAAGAAAAGTCTTAAAATGTTCAGATAGAAATGGTTTATATATAGTACAAGGCGAAATAATACTAATAGAAGAAGCGAACTCAAGTGTACAGCAAGACAAAAATATTTGGCACCAACGTCTCGGACACTTAAATAGGAAATCATTAAAAATTATGGGTTTACCTGTGTCTGATGAAACATGTGGTCCTTGCATGAAGGGAAAATCTACTCGTTTACCATTCTATCCAGTTGACAGGCCAAGAAGTAGAAAAATAGGAGAATTATTGCATACAGATATTGGAGGTCCTGTATCACCAATTTCTTATGATGAAAAACAATATTACCAGACCATAACTGATGATTTTTCTCATTTTGTGACTGTTTATCTATTAAAGAATAAATCTGAAGCCACAAGAAATTTAATAAATCATATAAAGGAGTTAGAAAGACAAAAGGAAACTAAAGTTAAACGCATAAGATGTGATAATGGTGGAGAGTTCACCGCTGGCTGTTTGAAGCAATTTTGTATGGAAAATGGAATTATAATAGAGTATAGTCAACCTTACACACCACAACAAAATGGTGTGGCAGAGAGGCTAAACAGAACATTACTAGATAAGTCAAGAACTTTATTAAGTGAAACTGGATTACCTAAATATTTGTGGTCTGAGGCTATAATGTGTGCAGCATATCAATTGAATCGATGCCCATCAAGATCTATAAAGTATAAGATACCAGCTGAAATATACTACGGACTAGAAAATGTTAACTTGAACAAGTTAAAGGTATTTGGTTCTAAAGCATGGTATACGTGTGTCCCACAGAATAAGAAATTAGATAATAGAGCTGAAGAAGCCATTATGGTTGGCTATGGCAAACAAGGTTATAGATTATGGAATCCAAAAACAACAGAAATAATATTCTGCAGAGATGTCAAGTTTGATGAAAAGTACTATGAACATAAAAACAGTATTAAAAATAACAACTATATTTATTTACCAGAAGAGGACACAAAAAATGAAGTTATGTGCAATGATAAAAATAAAATTGAGGAAGAAAAAGTAATACAGAAAAATGAAGAGACAGACACAAAAAGAACTAGATCAGGAAGGATAATAAAGCAACCTGATTATCTAAAGAATTTTGGGACGTACACAGCATATTGTTACTTAGTGTGTAATGACCCAGAAAGCTATGAAGAAGCGATAAAAGAAGTTTCATGGAAAGAAGCGATACATAAGGAATTAGCAGCACTTGAGAACTTACAAAGCTGGGAAGAGACTAAACTACCGAAAGGAAAATTAGCTATAGACACTAAGTGGGTTTTTAGAACGAAAGACGATGGCACTAAGAAAGCCAGATTAGTCGCTCGAGGTTTTCAAATAAAAAATTATGAGAATGAAATATTCTACAGTCCTGTAGTAAGAATGTCTACGATAAGAGCATTTTTTGTAAAAGCTATCCAAGAAGGATACAAATTAAGGCAATTGGATATTCCTACAGCCTTTCTCAATGGATTTCTTGATAGTGAAGTTTATATAAAAATACCCAAAGGCAAAGAAAACAAAGATGGAATAGTTTTGAGGTTAAAGAGAGCATTGTATGGATTAAAAGAAAGCCCTAAATGCTGGAACATGAGATTTGATGAATTTGCAAGAAAGAATGGATTGATACAGATACAGAAAAAAATTATTAATAAATTGAAGCAAGAATTTAAAGCTAAAGATTTAGGACAGATTGAGAAATATCTTGGTATGGAAATTAAACAGGAAGAAAGTAAATTAACGATTAAACAAGAAAAGATAATTGAGAAGATACTAGAAAAATTTGGAATGTCAGAATGTAAAGGTATAGGAACACCTATGGAGGTAAATTTTCAAATAAACAAAAATGAGAAGATTATTGATGTACCATATCGACAACTCATAGGAAGCATAATGTATTTGGCTACTATGTCCAGACCAGATCTGCAGTTTGCTGTATCATATCTTAGCAGATACCTAGACTGTCCTACTCAACAGACTTGGAAAGCTGGAAAGAGAATTCTGCAATACCTAAAAGCTACAAAAGACAAAATGTTAGTTTTTCAAAAAAGGAATAATCTAGATGTGGATTTATGTGCATATTCAGACTCTGATTGGGCAGGTGATATTGTTGATCGCAAAAGTGTCAGTGGGGGTATCATAATGTGTAGTGATAATCCTGTATTTTGGTACTCTAGAAAACAAAGTTGTGTTGCATTATCGACAGCAGAATCAGAGTACATTGCTAGTGCTTGTTGTGCTCAAGAGTTAGTGTATTTGAAAGGTGTACTGTGTGATTTTGGATATGAATGTAAATTGACTTTATTTATGGATAATAAGGGAGCAATATGTTTAGCGAAGTCAAATGAAAACTCTAAAAGGAGTAAGCATATTGATATAAGGATGCACTATATTAAGGACTTGGTGAGGAATAATGTATTAGATATTGAATATGTGTCATCTGATAAAAATATTGCTGATATTTGTACAAAATCTTTATGCAAAGAAAAGTTAGGTAGGAGAAAGGCGTTATTTGAAAAAAGAAAACGGATAAGTGACTACGCTTTAGTAATGGGGATGTTTGGAATTATAATTATGGTAATAGAAAATGAACTCTCAAGTGCCGGTGTTTATACTAAGGCATCAATATATTCACAGGCGTTAAAGACGCTAATATCAATGTCGACTGTGATTTTACTTGGCCTAATCGTCGCGTATCATGCTTTAGAAGTACAATTATTTATGATAGACAACTGCGCCGACGACTGGCGGATAGCAATGACGTGGCAAAGGATAGCGCAAATCGGCCTCGAACTGGCGATATGCGCCGTTCACCCCATCCCTGGACAATATACTTTTACGTGGACGACAAAGTTGGCCAACAAGGGTGGAGTGATAGGCGTTGAAGTTGTTCCTTATGACGTCACGTTGTCACTGCCGATGTTCTTTAGGCTGTATCTTATATGCAGGGTCATGTTACTTCACAGTAAATTGTTCACGGACGCTTCATCCAGAAGTATAGGAGCTTTAAACAGAATTAATTTTAATACTAGATTCGTCTTGAAGACATTAATGACAATTTGCCCTGGTACTGTATTATTAGTATTTATGGTGTCACTTTGGATAATCGCAAGCTGGACATTACGACAATGCGAAAGGTTTCACGACGAGGAACACGCTAATCTACTGAATGCGATGTGGCTAATAGCTATAACGTTTCTCTCCGTTGGTTTTGGTGACATAGTGCCAAACACATATTGTGGCAGAGGTATTGCTGTTAGCACCGGTATTATGGGAGCTGGATGCACAGCGTTATTAGTCGCGGTTGTTTCAAGAAAATTAGAATTAACTAGAGCCGAGAAGCACGTTCATAACTTCATGATGGACACACAACTTACTAAAAGACTGAAAAACGCAGCGGCTAACGTGCTTCGAGAAACGTGGTTAATATACAAACACACGCGACTAGTAAAAAGAGTTCATCCAGGAAGAGTGAGGACGCATCAGAGGAAGTTTTTGCTAGCTATTTATGCATTACGAAAAGTGAAGATGGATCAACGAAAACTAATGGACAATGCCAACACAATAACTGACATGGCAAAGACACAGAACACGGTCTATGAGATTGTCTCAGATATGAGCACGAGACAGGACACTATAGAAGAGAGGCTGACTAGTTTAGAAGAAAAACTAACAACGTTACAGGAACAAGTAAATAGTTTACCAGATGTTATGGCAAGGTGTTTACAACAATGCTGGGAGAGAGCTGAACAAAGAAGGAATTTTCTTCATCCAGACACCGCCGCTGTGCCTACGCCGCCATCGTCTACTATTACGCCTTATGCAAGAGCAATGCCGTCAGCGTCACATCCGTGGCCCCCGAGTCCGGTGCTGCAACCGTCAGCACGAACCCACTCGGCTCCAGAGAGCACGACAGCTCACTCTCCAACACCAGTCCAGCTGCAGCCTTCAAGCCCTGCTCCTCAAGTGACGCGGCCGCCCTTGCCCAGCTGA

Protein

MAENFRRAYGPPDGEWLPSPMDFSNARGRAKPLPTAAIAAYRIANGLSLGSALTEYFGVFQLRKPVSTLSIPGAMKAYSGGGRDASGEEAGVALVGVHSEYPRFGEERALGGGTYKGGGTAKHKPNIGYSWKFRLRCLLDEKSLLEVASSGVIELKQKTADAAAKALIVKCVPDKYLDIIKDATTSYTMLASLDKVFERKGIFTKLHLRRKLLSLKLRDDKLEDYFMRFESLIREIENIDKKMDEEDKICYLLTGMSEKYNTVITAIETMSADKIDMEFVKARLLDEELKLNNKGEEYNDTKNDVSFTASSVECYRCHKKGHFARECRSRGGYSRRNINNKGICGKNRTGEQNNMTESIPENKYNFLAITECNLSREDKFIEFIIDSGATENLIKEELEKYMYEIKKLPDKIKIKIANGEILEADKKGKITIRDKNNNTINIEALMVPGIYHNIISVRNLNMKGNKVVFTKFGAQIINGRKVLKCSDRNGLYIVQGEIILIEEANSSVQQDKNIWHQRLGHLNRKSLKIMGLPVSDETCGPCMKGKSTRLPFYPVDRPRSRKIGELLHTDIGGPVSPISYDEKQYYQTITDDFSHFVTVYLLKNKSEATRNLINHIKELERQKETKVKRIRCDNGGEFTAGCLKQFCMENGIIIEYSQPYTPQQNGVAERLNRTLLDKSRTLLSETGLPKYLWSEAIMCAAYQLNRCPSRSIKYKIPAEIYYGLENVNLNKLKVFGSKAWYTCVPQNKKLDNRAEEAIMVGYGKQGYRLWNPKTTEIIFCRDVKFDEKYYEHKNSIKNNNYIYLPEEDTKNEVMCNDKNKIEEEKVIQKNEETDTKRTRSGRIIKQPDYLKNFGTYTAYCYLVCNDPESYEEAIKEVSWKEAIHKELAALENLQSWEETKLPKGKLAIDTKWVFRTKDDGTKKARLVARGFQIKNYENEIFYSPVVRMSTIRAFFVKAIQEGYKLRQLDIPTAFLNGFLDSEVYIKIPKGKENKDGIVLRLKRALYGLKESPKCWNMRFDEFARKNGLIQIQKKIINKLKQEFKAKDLGQIEKYLGMEIKQEESKLTIKQEKIIEKILEKFGMSECKGIGTPMEVNFQINKNEKIIDVPYRQLIGSIMYLATMSRPDLQFAVSYLSRYLDCPTQQTWKAGKRILQYLKATKDKMLVFQKRNNLDVDLCAYSDSDWAGDIVDRKSVSGGIIMCSDNPVFWYSRKQSCVALSTAESEYIASACCAQELVYLKGVLCDFGYECKLTLFMDNKGAICLAKSNENSKRSKHIDIRMHYIKDLVRNNVLDIEYVSSDKNIADICTKSLCKEKLGRRKALFEKRKRISDYALVMGMFGIIIMVIENELSSAGVYTKASIYSQALKTLISMSTVILLGLIVAYHALEVQLFMIDNCADDWRIAMTWQRIAQIGLELAICAVHPIPGQYTFTWTTKLANKGGVIGVEVVPYDVTLSLPMFFRLYLICRVMLLHSKLFTDASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEEHANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVHPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTLQEQVNSLPDVMARCLQQCWERAEQRRNFLHPDTAAVPTPPSSTITPYARAMPSASHPWPPSPVLQPSARTHSAPESTTAHSPTPVQLQPSSPAPQVTRPPLPS

Uniprot

A0A146L6N5 A0A0A9XG27

Pubmed

26823975 25401762

EMBL

GDHC01015802 JAQ02827.1 GBHO01027564 JAG16040.1

Pfam

PF00665 rve + More
PF07727 RVT_2

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR001584   Integrase_cat-core
IPR013103   RVT_2
IPR012337   RNaseH-like_sf
IPR036397   RNaseH_sf
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10

ProteinModelPortal

A0A146L6N5 A0A0A9XG27

PDB

6CNO E-value=7.89115e-75, Score=720

KEGG

101741117 K04944 potassium intermediate/small conductance calcium-activated channel subfamily N member 3 | (Re

GO

GO:0003676 GO:0000943 GO:0015074 GO:0008270 GO:0005516 GO:0006813 GO:0015269 GO:0016021 GO:0004190 GO:0006508 GO:0016286

PANTHER

PTHR11439

Length:

1816

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

128.39194

Exp number, first 60 AAs:

1.36523

Total prob of N-in:

0.06230

outside

1 - 1333

TMhelix

1334 - 1356

inside

1357 - 1368

TMhelix

1369 - 1388

outside

1389 - 1443

TMhelix

1444 - 1466

inside

1467 - 1501

TMhelix

1502 - 1524

outside

1525 - 1538

TMhelix

1539 - 1561

inside

1562 - 1567

TMhelix

1568 - 1590

outside

1591 - 1816

Pi

187.34297

Theta

185.848767

Tajima's D

0.304123

CLR

0.499166

CSRT

0.462776861156942

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree