SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12563
Pre Gene Modal
BGIBMGA001444
Annotation
PREDICTED:_cuticular_protein_RR-1_motif_21_isoform_X1_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 3.081
 

Sequence

CDS
ATGAAGCTGATTCTCATTGTCGCTGCCTTCCTGGCTGTTACATTTGCCGATAATGTCGAATCCGATAAAGAAATCGAAGATTCAGAAGCAGCGGAATCTGTTGGTCTACTAAGCAAAAGCTTAGACCTCAACACGGCTGCTAGTGCATACAACTCGTACGCACCTTCGAACCAGAGCCCGCCTATCCAGTGGAAACCTCAAAATACGTGGAACGCTCCACCCAAGCCGATCCAGCCGATAAATACTTATCCCCAAAACAATTACGCCCCCCCTCAAAACAATTACGCCCCCCCTCAAAACTCATACTATCCTCAGAATACATATGCTCCTCCTCAAAACACCTATCGTCCCACCTGGAGCACGCCTTCATATCAGACTTCGACCACAACAACTCCCGTCCCAGTGATCAAGAACGAAATGTATTATGGTGATAATGGCAGTTACAAATACGAGTATCAAATCGCCGATGGAACACACGTAGGCGAGGAAGGCTACTTCACGAATCCCAACACAGAAGAGGCAAGCCTGGTGAAAAAGGGCTGGTACTCTTACACTGGAGCTGATGGCAAAGTTTACACCGTCCACTACTGGGCCGACAAGACTGGCTACCATGCTTACGGGGACCATTTACCCACTCCTCCTCCCGTACCTGCTGCTATTCAGGCAGCCCTTGATCAAAATGCCAAAGAGGAAGCCGCGCAGGCTGAAGCCGAAAAGAACAAGCCACAACACGTTTATCATCCCACACAGGCGCCTATTTACTACCCGACCCAAGCACCTACATACTATCCCACCCAAGCCCCATCTTACTACCCCACCCAAGCTCCAACTTACTATCCCACTCAAGCTCCTTCTTACTACCCAACTCAGCCCCCTACCTACTACCCTACCCAAGCTCCCAGTCACTATCCATCCCAGTCATACCCCCAAGAACAAAACTATCCAAGTTACGGTAAAAAGTAG
Protein
MKLILIVAAFLAVTFADNVESDKEIEDSEAAESVGLLSKSLDLNTAASAYNSYAPSNQSPPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNNYAPPQNSYYPQNTYAPPQNTYRPTWSTPSYQTSTTTTPVPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVPAAIQAALDQNAKEEAAQAEAEKNKPQHVYHPTQAPIYYPTQAPTYYPTQAPSYYPTQAPTYYPTQAPSYYPTQPPTYYPTQAPSHYPSQSYPQEQNYPSYGKK

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.998609
 
 
Length:
320
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00814
Exp number, first 60 AAs:
0.00814
Total prob of N-in:
0.00723
outside
1  -  320
 
 

Population Genetic Test Statistics

Pi
204.288507
Theta
215.416285
Tajima's D
0.586036
CLR
0.258906
CSRT
0.543022848857557
Interpretation
Uncertain
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