SGID The Silkworm Genome Information Database
Gene
KWMTBOMO12559
Pre Gene Modal
BGIBMGA001447
Annotation
hypothetical_protein_KGM_11843_[Danaus_plexippus]
Location
Bomo_Chr21(-):7077090-7126293      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.534
 

Sequence

CDS
ATGGCGGCCTTGCCAGCAGGTGTTCAGTATCCGTTATCATCGGAGTCTAGTTATAAAGAAAACAAGGAACTAGTGTTTGTGAAATTAACGGATTCTGCACTGAAAGCTATAGAAGATTTTCTTAGAAATAACAGAGACCGATTAGCTAAACCTAAAATACAGTTCCTACCCGGAAATGAAGGGAAAATTTCCATTCCGACTCCTACCGGTGGCAATGGACCATCGGGTGAAGCTACGTTTCGCTTCAGCATCAATAGTAATACAGAAATGGAAGGTCCACAGGGTGCGTTTGAATGTGTTAGGAGCGGTGGCACGCGGCGTTTGGAGTCGTGCGGGCCGCTACCGCGAAGAATGCGCGTCCAAGCCAATGACGACTCGTACGAGGCCACAAAAGACCGGATGGCGAAAACGGTCGCCGCGGAGCAGAGTAAATGCACCCGCGTGATTAAACCTAACATGACGGACATTGGAAGGCGTGTAAAAGTACGACACTCGTACGTGTCAAACAATACCGCCGGTCAACTCGCCGATCGACCTGACCGGGCCGACCGACCGGAGCGTCCAGATCGACCCGATCGGCCCGACAGACCTGATCGATCAGAGAGACCGGAGCGGGTCGAGAGAGGCGACCGGGTGGAGCGCGTGGAACGGCCTCAGGTGGCGGCGAACGTGCCTCGTCCTCAACCCGCGCCGACGCAGCCCCATCAGCCGCCCCAGCACCTAGCGACGCATCATCAGCGTCCGCCTCATAACCCGGATCTCACTAGGAGATCTTTGAAAGAAAGACTTATACAATTATTAGCATTGAAACCGTTTAAGAAACCCGAATTGTACACTAGATTATCCTCCGAGGGGATCAAGGATAAAGAGCGGAGCGCCGTGAACAAAATACTACCGCAGATTAGTTTGATGAAGGACAACTGTTACCACTTACGTAGGCACATCTGGAATGACGTCAACGAGGATTGGCCGTTCTACACTGAAGAGGAAAAACGCATGCTCAAGAGGCGGAAACCTCAAAACTTAACTCCCCCGCTGAGCAGCGACTCGGCGCAGTCGCTGTCGCCGCGCGCGTCCCCCGGCGCAAAGCGAGCCCCCGCGCCCCCCGGCCCGCCCGCCGCCGCCCTCGGGGACGACGCCCCCGCCGTTAAGAAGCAACGCATCTCGCATTACCGCCGCCCCTCGCCGCCCTCGTCCGGGTACGCCACCACCTCGTCGGGGGAGCGGCACGCATCCGACAACGAGGATGAACGGACGACAACGCAGGTTAAAAAGGACAACGGTTACACCCTTAACTTTACCACAGTCAAGGAAATCTGTCCCAGTCCTCCGGTCAAACCGAACGGCTTTAGAAGTAGTCCCCCCGTAGAGCAAACTAATATCACAGAAAAAGACATCACAAATACGGAACCCTTAGAAAATACTGAATTAACGTCTGTGCCTGACGAGAATACGACTGATTTAGATGAGATCGAAAGGCGATACCCGCCGATCACGAGTTCGGGTATGCGACGGGCCTACAAAAACGAATTCGCCGAACTGTACACGGAGTACAGAGAGTTGTACGCGAGGGTTGCGCAGGTTGCGGCGCTGTTCACTAGGCTCGAGAACGAACTCAAACGGGCGCAACCCATGTCGCCTCACCATCAGAGCATAGAGCAACGCATCGTCGAGGAATACAGACGCGTCAGCAACGACGCCGCCTACCAACACGAGCGGCGGAGGGTCAACTATCTAGACAAGAAACTAACTCATCTCAAACGTATGGTGCACCAGTACGATCAGCTACGCAACCTGAAGCAGGATCGCGTATCGACGGCGAGTACGACTCAGGCGTACTGA
Protein
MAALPAGVQYPLSSESSYKENKELVFVKLTDSALKAIEDFLRNNRDRLAKPKIQFLPGNEGKISIPTPTGGNGPSGEATFRFSINSNTEMEGPQGAFECVRSGGTRRLESCGPLPRRMRVQANDDSYEATKDRMAKTVAAEQSKCTRVIKPNMTDIGRRVKVRHSYVSNNTAGQLADRPDRADRPERPDRPDRPDRPDRSERPERVERGDRVERVERPQVAANVPRPQPAPTQPHQPPQHLATHHQRPPHNPDLTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLMKDNCYHLRRHIWNDVNEDWPFYTEEEKRMLKRRKPQNLTPPLSSDSAQSLSPRASPGAKRAPAPPGPPAAALGDDAPAVKKQRISHYRRPSPPSSGYATTSSGERHASDNEDERTTTQVKKDNGYTLNFTTVKEICPSPPVKPNGFRSSPPVEQTNITEKDITNTEPLENTELTSVPDENTTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLRNLKQDRVSTASTTQAY

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5JW9     E-value=8.4266e-13,     Score=180

Ontologies

KEGG
101740554    K15183 RNA polymerase II elongation factor ELL | (RefSeq) RNA polymerase II elongation factor Ell
GO
GO:0006368   GO:0008023   GO:0006468   GO:0004674   GO:0008270   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

Topology

Length:
613
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00028
outside
1  -  613
 
 

Population Genetic Test Statistics

Pi
195.599557
Theta
186.136475
Tajima's D
-0.888892
CLR
129.940568
CSRT
0.16179191040448
Interpretation
Uncertain
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