Silkworm Genome Informatics Database

Gene

KWMTBOMO12557

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr21(+):7050984-7053861 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.408 Nuclear Reliability : 1.534

CDS

ATGATACCTCATACCTTGAATACCCCGGCTACGTCCCACAGCAGTGATGCAGGTTCAGCTCTGTTTGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAGCCTTCTTTGTTGGACCTTCTGCTGACCACAGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCGCTTGGATCGTCTGATCACTGCCTTATTCGTGCTGCCGTACCACTCTCTCGTCCTGATCGTCGAACGACGACCAGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGATTGCGTGAATTTTACGCATCCTACCCTTGGGGGCGGTTCTGCTTCTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCCTCCTCTGAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCTGCATACGTGGCATGGGATAATGCCAGGAGACGTCGGGATCCTAACATCTCAGGGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTAATTGCCAAGGCGAAGTCGGAGCACGTCGCTAGAGTTGGCGAGCGATTGAAGAGCTATCCCTCCGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTCTGCAGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACAATCTGGCCCACAGCGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGTGTGATAGCTCCCTGCCGGATATCTGCTTCACACAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCCGCAGTGGTTTTGAAAACGTGCGCCCCTGAGCTGACACCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAACAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATTATAAATACACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGTTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCATGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCATCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAGCCTCTGGGTCTACGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTATGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGTTGAAGTCCATGGGCGACGGTAA

Protein

MIPHTLNTPATSHSSDAGSALFEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRTTTRYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPDICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSIMVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIVEVHGRR

Uniprot

Q6UV17 A0A437B259 A0A3S2M451 A0A3S2NTH0 A0A3S2LQP1 A0A437BF96 + More
A0A3D5S1K1 T2M4I6 A0A437BQ08 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VX79 A0A0P4VPK5 W4XUR2 A0A2H9T4N9 W4YEI4 W4XMI9

Pubmed

30148503 24065732 29150518

EMBL

AY359886 AAQ57129.1 RSAL01000210 RVE44225.1 RSAL01000041 RVE50934.1 + More
RSAL01000090 RVE48098.1 RSAL01000422 RVE41792.1 RSAL01000072 RVE49051.1 DPOC01000269 HCX22453.1 HAAD01000593 CDG66825.1 RSAL01000021 RVE52490.1 GDRN01111334 JAI56796.1 GDRN01111277 JAI56804.1 GDRN01111326 JAI56798.1 GDRN01111278 JAI56803.1 AAGJ04060226 NSIT01000234 PJE78200.1 AAGJ04103823 AAGJ04112043

Proteomes

UP000283053 UP000007110

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF01585   G-patch
PF02460   Patched
PF14306   PUA_2
PF01747   ATP-sulfurylase
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR028082   Peripla_BP_I
IPR000832   GPCR_2_secretin-like
IPR017981   GPCR_2-like
IPR007023   Ribosom_reg
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR027417   P-loop_NTPase
IPR002891   APS_kinase
IPR002650   Sulphate_adenylyltransferase
IPR025980   ATP-Sase_PUA-like_dom
IPR014729   Rossmann-like_a/b/a_fold
IPR024951   Sulfurylase_cat_dom
IPR015947   PUA-like_sf
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR011011   Znf_FYVE_PHD
IPR019787   Znf_PHD-finger
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF56219   SSF56219        + More
SSF53822   SSF53822
SSF54928   SSF54928
SSF52540   SSF52540
SSF88697   SSF88697
SSF57667   SSF57667
SSF57903   SSF57903

Gene 3D

3.60.10.10 3.30.70.330 3.40.50.620 3.30.40.10

CDD

cd12647  RRM_UHM_SPF45
cd00517  ATPS
cd02027  APSK

ProteinModelPortal

Q6UV17 A0A437B259 A0A3S2M451 A0A3S2NTH0 A0A3S2LQP1 A0A437BF96 + More
A0A3D5S1K1 T2M4I6 A0A437BQ08 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VX79 A0A0P4VPK5 W4XUR2 A0A2H9T4N9 W4YEI4 W4XMI9

PDB

6AR3 E-value=1.70835e-05, Score=119

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0016021 GO:0003723 GO:0003676 GO:0046872

PANTHER

PTHR17602 PTHR13288 PTHR45951:SF3

Length:

875

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00453

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1 - 875

Pi

126.26755

Theta

37.682765

Tajima's D

0

CLR

32.189871

CSRT

0.371181440927954

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree