The Silkworm Genome Information Database

Gene

KWMTBOMO12551 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001450

Annotation

PREDICTED:_uncharacterized_protein_LOC106129671_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr21(-):6955126-6972593 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 1.379

CDS

ATGTTGTTACTCATTCGACCTGCTGTTTTTGTTTTCGTATCGACCGTAGTCATCGGAGATGCACGACAGGCCGTAAAGCCTTTATCAGGATCGGCTCCGTCAGTCCGCGTGTCGGCACTGGGCTCTGTATCCGGGAACGATGAGACGAAAGACAGCAAACAGCCAAGCAAGGCGCGGCAGAAGAAGTTCCAGAGGCACTTCCCGCAGGTCGGACCAGAGGAGAAGGTGCTCAATTATTATTCGTGTGCACTTGTCGGCGATCTCCTCCTGCAAGGTCACCTGTACATCACGAAGAACTACTTCGCTTTCTACTCGAACGTGTTCGGTTATGTTACCAAGTTACTGATCCCAACGACATCGGTACTACGCATAACGAAGGAGAAAGTGGCCCGTATAATACCGAATGCGGTCGGCGTGTGTACCAGGGATGAGCGACACGTGTTCGGGTCGCTACTCTCGCGGGACTCTACGTACAAACTGATGATGCACGTGTGGAAGACGGCCCGGACACCAGAACTGGCCGTACCTAAAGCACAGGACCCGCGTGCCTCTGAGGTTGATTTCGAAGCCTCCGAATACTCCCCTGAAGACGACAGCAGTTCCGCTGGAGGCGATCAAGTGGACGCTCCCGCTGCCGTGAGAAGAGAATCCGAAACTATACTACCCACAGGTGCGGCAGTCATACAGCCGGCTTTACTGACCGGCAGCAGCACGCCGAAGCGTCGCGCGACACACTGCTGGCAGTTCCTGCTTGTGGCCGCTGTCGTGCTGCTCGCGCTGTCCGCACTGCTCCTATCCTACAAACTCTACCAAAGCAAATATGCGCAGGAGGAGGACTTGACGAATCTAACCGGAGACGAGCTGTATTCGGAACTGGTCCGCTGGAGGCAGAGGCTGCACGGGCGGGCCGCCGACGAACTCCACTCATTCCTCTCCACTAATCTATTGTTACTTACTAAGGTACGACAATCTCTAGAAGCACTGTCGGGTGTTATTGTCGACGACTTGCCTCCGCAGGACCCAGCTCGAGTTGTTCTGGACGTTCCAAACGATACGGCGTTTAGTTAA

Protein

MLLLIRPAVFVFVSTVVIGDARQAVKPLSGSAPSVRVSALGSVSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVFGSLLSRDSTYKLMMHVWKTARTPELAVPKAQDPRASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESETILPTGAAVIQPALLTGSSTPKRRATHCWQFLLVAAVVLLALSALLLSYKLYQSKYAQEEDLTNLTGDELYSELVRWRQRLHGRAADELHSFLSTNLLLLTKVRQSLEALSGVIVDDLPPQDPARVVLDVPNDTAFS

Uniprot

H9IW19 A0A2A4JJI8 A0A2A4JKK3 A0A2A4JIL0 A0A2A4JIP4 A0A1E1WJ43 + More
A0A2H1VWJ9 A0A0N0PBC1 A0A194Q267 A0A212FHM3 A0A0N0BHI4 A0A0T6B2Z4 A0A182H094

Pubmed

19121390 26354079 22118469 26483478

EMBL

BABH01006141 BABH01006142 BABH01006143 NWSH01001265 PCG71936.1 PCG71932.1 + More
PCG71935.1 PCG71937.1 GDQN01009183 GDQN01004025 JAT81871.1 JAT87029.1 ODYU01004577 SOQ44594.1 KQ461068 KPJ09906.1 KQ459564 KPI99662.1 AGBW02008483 OWR53242.1 KQ435750 KOX76268.1 LJIG01016093 KRT81636.1 JXUM01100934 JXUM01100935 KQ564611 KXJ72020.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000053105 + More
UP000069940 UP000249989

PRIDE

H9IW19

Pfam

PF02893 GRAM

Interpro

IPR004182 GRAM + More
IPR011993 PH-like_dom_sf

Gene 3D

2.30.29.30

ProteinModelPortal

H9IW19 A0A2A4JJI8 A0A2A4JKK3 A0A2A4JIL0 A0A2A4JIP4 A0A1E1WJ43 + More
A0A2H1VWJ9 A0A0N0PBC1 A0A194Q267 A0A212FHM3 A0A0N0BHI4 A0A0T6B2Z4 A0A182H094

PDB

5YQR E-value=3.55892e-08, Score=138

KEGG

101736541 no KO assigned | (RefSeq) GRAM domain-containing protein 1B

GO

GO:0016021

SignalP

Position: 1 - 21, Likelihood: 0.577280

Length:

355

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

36.88124

Exp number, first 60 AAs:

4.52842

Total prob of N-in:

0.26141

outside

1 - 244

TMhelix

245 - 267

inside

268 - 355

Pi

196.593384

Theta

157.851275

Tajima's D

0.567676

CLR

0.000878

CSRT

0.533173341332933

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics