Gene

KWMTBOMO12550

Pre Gene Modal

BGIBMGA001523

Annotation

PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]

Location

Bomo_Chr21(+):6942164-6947569      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.007

CDS

ATGGTATTAAATAGCTACTTACTTGTACCGCTTATGATTACGAAACAAAATATAAACATATTATGTAAACTGTACGCTGCCCTCGGTCGCCGCGGTGGGCGTGTAGTAGGCAGCGACTTACAAAGCGGCTCAGCATCCTTCAGGGTCCAAGCGTTGTTGCCAGTAGCCGAGAGCTTCAAATTTGCCCTCGAACTTAGAACCCATACTTCGGGTCTGGCCGCACCTCAGATGTTGTTCAGTCATTGGGAGGTAATCGACATAGATCCGTTTTGGCGGCCTTGCACCGAAGAGGAGTATCTGCACTGGGGCGAGAAATATGACGGAGTGAACCGCGCTAAAGCGTACATGGACTCCGTGCGGGCGAGGAAAGGGCTCGCTACAGACAAACAGCTCGTACAACATGCTGAGAAACAACGTACTCTATCAAAAAATAAATAA

Protein

MVLNSYLLVPLMITKQNINILCKLYAALGRRGGRVVGSDLQSGSASFRVQALLPVAESFKFALELRTHTSGLAAPQMLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQRTLSKNK

Uniprot

A0A2H1VUS8   A0A437AZ70   A0A2A4JJN6   A0A194Q294   A0A0N0PB45   I4DPB2   + More
T1HC20   A0A1I8PHF7   T1PJU6   A0A023F2G3   E0VSD8   A0A3B0KT73   Q29EI2   B4H220   A0A1W4UTM0   A0A1B6M960   Q9VV61   B4QMT7   Q95TH3   B4J0V8   B3NHZ5   B4PKE2   A0A3Q0J187   B4LI48   B4MMH6   B3M4I0   W8BNN8   A0A1B0EWD2   A0A1B6H8T4   A0A182K5B0   A0A182Y494   A0A067QQQ9   A0A182J0J6   A0A0A1X8Z3   A0A1I8M6N1   A0A2H6NDW2   A0A182W049   B4L9J3   A0A182N653   A0A1B6D2S9   W5J6T3   A0A182PKM1   F4X468   A0A182RNS8   A0A3L7HZT0   A0A2D4N9K4   A0A182M6G6   A0A182Q2S6   V5HTX8   A0A0K8VYQ6   A0A182VHX1   A0A034VPR3   A0A182LFV3   K7EF77   A0A0A9XJZ8   A0A146L7U6   A0A232FFL4   A0A182U8X9   A0A087ZU41   A0A443STA0   T1DCE6   A0A182HU65   Q17ME5   A0A0M9A480   U6DUB7   T1JST1   A0A158N9J3   A0A2L2YHD4   K7IZU7   A0A0P7TH02   A0A151JV53   A0A182WRL3   A0A1Q3G1H2   A0A151XGN0   A0A2U3YKB9   A0A091KI73   A0A2M4CHR0   A0A195E275   A0A250Y0E9   E9IW62   A0A151II41   A0A151I459   A0A182GXG9   A0A3Q7QSU3   H9F5S5   A0A3S4RCH3   M1EK46   A0A226MZ80   A0A1S3JT90   A0A1D2NKS3   A0A1S3JTA9   A0A3G1NCT0   A0A226PH77   G3IEH3   A0A293LQM4   A0A1V9XAY4   A0A131XUK8   G3UPM7   A0A1E1XMX1  

Pubmed

26354079    22651552    25474469    20566863    15632085    17994087    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    17550304    24495485    25244985    24845553    25830018    25315136    20920257    23761445    21719571    29704459    25765539    25348373    20966253    18464734    25401762    26823975    28648823    17510324    21347285    26561354    20075255    28087693    21282665    26483478    25319552    23236062    27289101    24621616    21804562    28327890    20838655    29209593   

EMBL

ODYU01004577    SOQ44595.1    RSAL01000250    RVE43492.1    NWSH01001265    PCG71938.1    + More
KQ459564    KPI99661.1    KQ461068    KPJ09905.1    AK403505    BAM19752.1    ACPB03006092    ACPB03006093    KA649031    AFP63660.1    GBBI01002905    JAC15807.1    DS235750    EEB16294.1    OUUW01000012    SPP87098.1    CH379070    EAL30079.2    CH479203    EDW30372.1    GEBQ01007512    JAT32465.1    AE014296    AAF49461.3    CM000363    CM002912    EDX10729.1    KMZ00052.1    AY058769    AAL13998.1    CH916366    EDV95779.1    CH954178    EDV52081.1    CM000159    EDW94840.1    CH940647    EDW68592.1    CH963847    EDW73321.1    CH902618    EDV40474.1    GAMC01003825    JAC02731.1    AJWK01022557    GECU01036636    JAS71070.1    KK853510    KDR07074.1    GBXI01006528    JAD07764.1    IACI01082070    LAA30324.1    CH933816    EDW17368.1    GEDC01017375    JAS19923.1    ADMH02002131    ETN58484.1    GL888628    EGI58736.1    RAZU01000137    RLQ70522.1    IACM01154117    IACM01154118    LAB42381.1    AXCM01004107    AXCN02000196    GANP01006770    JAB77698.1    GDHF01008335    JAI43979.1    GAKP01015157    JAC43795.1    GBHO01023628    JAG19976.1    GDHC01015899    JAQ02730.1    NNAY01000309    OXU29310.1    NCKV01000388    RWS30755.1    GAKT01000062    JAA93000.1    APCN01000610    CH477206    EAT47893.1    KQ435737    KOX76895.1    HAAF01014457    CCP86279.1    CAEY01000468    ADTU01009656    ADTU01009657    ADTU01009658    ADTU01009659    ADTU01009660    ADTU01009661    IAAA01028002    LAA07543.1    JARO02011146    KPP60093.1    KQ981713    KYN37334.1    GFDL01001398    JAV33647.1    KQ982169    KYQ59475.1    KK742336    KFP39163.1    GGFL01000597    MBW64775.1    KQ979814    KYN19022.1    GFFV01002838    JAV37107.1    GL766449    EFZ15243.1    KQ977510    KYN02254.1    KQ976461    KYM84699.1    JXUM01095225    KQ564181    KXJ72614.1    JU326228    AFE69984.1    NCKU01000721    RWS14437.1    JP009148    AER97745.1    MCFN01000329    OXB60410.1    LJIJ01000015    ODN05841.1    MF045044    AUS84050.1    AWGT02000070    OXB79423.1    JH002198    EGW05879.1    GFWV01005431    MAA30161.1    MNPL01016566    OQR70697.1    GEFM01005878    JAP69918.1    GFAA01003103    JAU00332.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000053240    UP000015103    UP000095300    + More
UP000009046    UP000268350    UP000001819    UP000008744    UP000192221    UP000000803    UP000000304    UP000001070    UP000008711    UP000002282    UP000079169    UP000008792    UP000007798    UP000007801    UP000092461    UP000075881    UP000076408    UP000027135    UP000075880    UP000095301    UP000075920    UP000009192    UP000075884    UP000000673    UP000075885    UP000007755    UP000075900    UP000273346    UP000075883    UP000075886    UP000075903    UP000075882    UP000002279    UP000215335    UP000075902    UP000005203    UP000288716    UP000075840    UP000008820    UP000053105    UP000015104    UP000005205    UP000002358    UP000034805    UP000078541    UP000076407    UP000075809    UP000245341    UP000078492    UP000078542    UP000078540    UP000069940    UP000249989    UP000286641    UP000285301    UP000198323    UP000085678    UP000094527    UP000198419    UP000001075    UP000192247    UP000001645   

PRIDE

Q9VV61    Q95TH3    G3IEH3   

Pfam

PF00679   EFG_C        + More
PF14492   EFG_II
PF00009   GTP_EFTU
PF03144   GTP_EFTU_D2
PF03764   EFG_IV

Interpro

IPR035647   EFG_III/V        + More
IPR000640   EFG_V-like       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR027417   P-loop_NTPase       
IPR004161   EFTu-like_2       
IPR009000   Transl_B-barrel_sf       
IPR041095   EFG_II       
IPR000795   TF_GTP-bd_dom       
IPR005225   Small_GTP-bd_dom       
IPR005517   Transl_elong_EFG/EF2_IV       

SUPFAM

SSF54980   SSF54980        + More
SSF54211   SSF54211       
SSF50447   SSF50447       
SSF52540   SSF52540       

Gene 3D

3.30.230.10    

ProteinModelPortal

A0A2H1VUS8   A0A437AZ70   A0A2A4JJN6   A0A194Q294   A0A0N0PB45   I4DPB2   + More
T1HC20   A0A1I8PHF7   T1PJU6   A0A023F2G3   E0VSD8   A0A3B0KT73   Q29EI2   B4H220   A0A1W4UTM0   A0A1B6M960   Q9VV61   B4QMT7   Q95TH3   B4J0V8   B3NHZ5   B4PKE2   A0A3Q0J187   B4LI48   B4MMH6   B3M4I0   W8BNN8   A0A1B0EWD2   A0A1B6H8T4   A0A182K5B0   A0A182Y494   A0A067QQQ9   A0A182J0J6   A0A0A1X8Z3   A0A1I8M6N1   A0A2H6NDW2   A0A182W049   B4L9J3   A0A182N653   A0A1B6D2S9   W5J6T3   A0A182PKM1   F4X468   A0A182RNS8   A0A3L7HZT0   A0A2D4N9K4   A0A182M6G6   A0A182Q2S6   V5HTX8   A0A0K8VYQ6   A0A182VHX1   A0A034VPR3   A0A182LFV3   K7EF77   A0A0A9XJZ8   A0A146L7U6   A0A232FFL4   A0A182U8X9   A0A087ZU41   A0A443STA0   T1DCE6   A0A182HU65   Q17ME5   A0A0M9A480   U6DUB7   T1JST1   A0A158N9J3   A0A2L2YHD4   K7IZU7   A0A0P7TH02   A0A151JV53   A0A182WRL3   A0A1Q3G1H2   A0A151XGN0   A0A2U3YKB9   A0A091KI73   A0A2M4CHR0   A0A195E275   A0A250Y0E9   E9IW62   A0A151II41   A0A151I459   A0A182GXG9   A0A3Q7QSU3   H9F5S5   A0A3S4RCH3   M1EK46   A0A226MZ80   A0A1S3JT90   A0A1D2NKS3   A0A1S3JTA9   A0A3G1NCT0   A0A226PH77   G3IEH3   A0A293LQM4   A0A1V9XAY4   A0A131XUK8   G3UPM7   A0A1E1XMX1  

PDB

5ANC     E-value=1.83352e-38,     Score=393

KEGG

101740296    K14536 ribosome assembly protein 1 [EC:3.6.5.-] | (RefSeq) elongation factor Tu GTP-binding domain-c

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0003746   GO:0005525   GO:0003924   GO:0005829   GO:0016021   GO:1990904   GO:0042256   GO:0043022   GO:0005739  

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31934

Exp number, first 60 AAs:

0.31879

Total prob of N-in:

0.05315

outside

1  -  145

 

 

Pi

189.047702

Theta

155.672548

Tajima's D

0.158349

CLR

0.122442

CSRT

0.412629368531573

Interpretation

Uncertain