Gene

KWMTBOMO12545  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001522

Annotation

PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]

Location

Bomo_Chr21(+):6786524-6797162      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.03 Nuclear   Reliability : 2.297

CDS

ATGCGGCTCGTAGATTCAAAGAAACTTTTAGAACTTCAAAACAATCCATCAAATATTCGTAATATTTGCATTGTGGCTCACGTGGACCATGGCAAAACCACACTGGCAGATTCCTTGATATCCAGTAATGGAATCATATCCCAGAGAATGTCCGGAAAACTTCGATATATGGACAGCAGGCCAGATGAACAACAACGAGGCATAACTATGAAAAGTAGCAGTATATCGCTGTATCACGCTATGAATCAAGAAGAATACCTGGTGAACCTCATAGACTCGCCGGGGCACATTGACTTTTCAAGTGAAGTTTCCACTGCTGTAAGGCTTTGCGATGGAGCCATTGTTGTTGTTGATGTTGTTGAAGGGGTGTGCCCACAAACAAGGCTTGTACTCAAACAAGCTTACTCTGAAAACATTCGACCAGTGCTCGTCCTCAATAAAATTGATAGACTCATTGTTGAAATGCAACTCACACCTCTGGATGCATACGTACATTTGACGCAAGTACTAGAACAAGTTAATGCAGTTGTGGGAGAGTTGTTCACCACTGAGGTATTTGAAAATGAAGAAGCCAGTATGGAGAAAAAGGAAAAAGAGGCATTGAATAAAGAAGACAACAACTTCTATGACTGGACTTCTGCTTTAGAAGAAGCTGATGATTCACACCTGTACTTCTCTCCAGATCAAGGAAATGTTGTATTTGCAAGTGCTGTCGATGGTTGGGGCTTTACAACTCTAACCTTTGCTAAACTGTTCTCTGATAAACTTGGTGTAAAGGAGGAAATTCTGAAGAAAGTTCTATGGGGTGATTTTTATTTGAACACAAAGACTAAACGGTTCATGAAAGGTGCCCAAGAAAAAGCTAAAAAACCACTTTTTGTTCAAGTAATTTTAGATAACTTATGGAATGTTTATGAAACTGTTGTAATGAGGCATGAGAAAGACAAAGTGCCTGTGATCTGTGAAAAACTGGGAATCAAGCTCACTGCTAGAGATTTAAGACACACAGATTCTCGAGTCCAATTACAATCTTTGATGGTCCAATGGCTGCCATTGTCTCATACAATTTTAAATATGGTATGTGAAAAATTACCATCTCCGAAAGAAATATTACCAGAAAAAGTGGAGAGACTCATGTGTTCAAGAATAAGAGATTTTGATTCTTTCAATATAGAAACACAGAAATTAAAAGAAGACTTTTTAGCCTGTGATAGTAATGAGAATAGACCTATAATTATTTTTATATCTAAAATGTTTAGTTTTGATAAAAGTGCTCTACCAGAAAATAGGCCTAAAGCATTGACTTCCGAAGAAATGGCTTTAAGAAGAGAAAAAGCAAGGCAATTGCGTGAAGAGTTAAAACAGAATAACGCTAATATAAATAGGCAATCAGAAGAAAAGTCACCACATGAGGAACAAGAGAAAAGTGCTGAAGATGAGAATGAAAAAGAAAAAGTGACATTTATTGCTTTTGCTAGAATTTTTAGTGGGAAAGTTAAGAAAGGTGATAGAGTATATGTCTTAGGCCCCAAGCATGATCCCTCTAAAATTCTTAATTGTAACATTAAAATAGATACAAATAAAAAGTTAAAAGATTTACAAAGCGATGAACACATAACTTGTGCAGAAATCAAATCATTATACATTTTGATGGGAAGAGAACTAGAAGACATCGATGAAGCTGTTGCTGGTAACATTATTGGAATCGGCGGCCTAGAGGAGCATGTACTAAAGACGGCAACTCTGAGCAGCACAGTAGCTTGTCCGGCTTTTAGCGAGATGCAATACTCAGTGGTACCTATTTTAAGAGTAGCGATAGAGCCTACTAATCCGTCACAGTTGCCTCAACTAGTAAAAGGTTTAAAACTGTTAAATCAATCTGATTCGTGCGTACAAGTTTTATTACAAGAGACTGGAGAGCATGTACTAGTCACCGCCGGGGAAGTTCATCTTGAAAGATGCTTAGAAGATTTAAGGACTAATTACGCAAACATCCCGATAACAGTTTCCGAACCAATCGTACCGTTCAGGGAAACAATAGTGGAACCACCGAAGATGGATATGGCCAATGAAGAGATCGCCTCGCAGAACGTAGACAAGAGCAACACAAAGTTGGAAGATCCAATAATAACAATATACACAAATAACAAGCAAAGCAAAATCAAGATCCGAGCGAAACCCATTCCAATCGAAATAACGAAACTGTTAGACAGATCTGCGGACTTACTAAAAGCCATTTCCCAACATATAAAGACTTTGCAAACGTTATCAATGAACGACAAGTTGGATAACAAAATGGAAGGCCTATATTTGAATGGCACCAAACATAAACTATCCGAACGCATGCTGAAACTAATCGAGACTTTTAAAGAGGATTTACAAAGTATTTGCTCCAAGCTGGGCCCGGATTGGAAGGACCTTGTAAGCCAGATATGGTCTGTCGGGCCCAGGAACTGTGGGCCAAACATGCTGCTGAACCATACTGCAGATTATTGCACAAAATATTTGCATCACGAAAAAGAGATAAGAGAAGACCCGAGATTTGAATACGAGGGTAGTTTTGTAAATGGCTTCCAATTGGCGACTTTGGCTGGGCCCCTGTGCGATGAGCCGATGATGGGCGTGGCCTTTTGTATCGAACAATGGACATTAGAGAAATCATTCAGTGACGACGTATCGCAAACATTTGGACCTTTATCAGGTCAAATAGTATCAGCAGTAAAGGAGGGCTGCAGAAAAGCTTTCCAAGTGCAACCACAGAGGCTGATGGCGGCCATGTACTCTTGCGATATAGCCGTCGACCAGAAAGTTTTAGACGTTGCGGACGCTAGAGCTTTTCGTTAG

Protein

MRLVDSKKLLELQNNPSNIRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVRLCDGAIVVVDVVEGVCPQTRLVLKQAYSENIRPVLVLNKIDRLIVEMQLTPLDAYVHLTQVLEQVNAVVGELFTTEVFENEEASMEKKEKEALNKEDNNFYDWTSALEEADDSHLYFSPDQGNVVFASAVDGWGFTTLTFAKLFSDKLGVKEEILKKVLWGDFYLNTKTKRFMKGAQEKAKKPLFVQVILDNLWNVYETVVMRHEKDKVPVICEKLGIKLTARDLRHTDSRVQLQSLMVQWLPLSHTILNMVCEKLPSPKEILPEKVERLMCSRIRDFDSFNIETQKLKEDFLACDSNENRPIIIFISKMFSFDKSALPENRPKALTSEEMALRREKARQLREELKQNNANINRQSEEKSPHEEQEKSAEDENEKEKVTFIAFARIFSGKVKKGDRVYVLGPKHDPSKILNCNIKIDTNKKLKDLQSDEHITCAEIKSLYILMGRELEDIDEAVAGNIIGIGGLEEHVLKTATLSSTVACPAFSEMQYSVVPILRVAIEPTNPSQLPQLVKGLKLLNQSDSCVQVLLQETGEHVLVTAGEVHLERCLEDLRTNYANIPITVSEPIVPFRETIVEPPKMDMANEEIASQNVDKSNTKLEDPIITIYTNNKQSKIKIRAKPIPIEITKLLDRSADLLKAISQHIKTLQTLSMNDKLDNKMEGLYLNGTKHKLSERMLKLIETFKEDLQSICSKLGPDWKDLVSQIWSVGPRNCGPNMLLNHTADYCTKYLHHEKEIREDPRFEYEGSFVNGFQLATLAGPLCDEPMMGVAFCIEQWTLEKSFSDDVSQTFGPLSGQIVSAVKEGCRKAFQVQPQRLMAAMYSCDIAVDQKVLDVADARAFR

Uniprot

H9IW91   A0A2A4K485   A0A212FHN7   A0A194Q262   A0A2H1WHK5   A0A2J7RJR5   + More
A0A2J7RJQ4   A0A067QQQ9   A0A023F2G3   A0A437AZG1   A0A0A9XJZ8   A0A146L7U6   J9K9F0   E0VSE5   A0A195E275   A0A151II41   A0A158N9J3   A0A151XGN0   A0A2S2R6I8   A0A151I459   E9IW59   A0A1D2NKS3   A0A087ZU40   T1DCE6   A0A0L7QNB0   A0A2A3EF81   A0A3B3CSR9   A0A3P9J9W7   A0A146XU24   A0A146P7F4   A0A091NA36   F6Z2L8   A0A146XUS9   A0A0F8CWX6   A0A3B5A655   A0A3Q2PQS7   R7VR65   A0A2I0MD14   A0A3Q2PRA9   A0A1V4JEA2   H0ZBZ7   A0A232FFU5   A0A3L8E1B7   A0A026WDP2   K7IZU7   A0A3B3XL63   A0A3B3XL40   A0A3B4UIP0   A0A3B4XQ79   A0A3B5RE45   A0A3B3TIG4   A0A087QWS2   A0A091LXT9   A0A2L2YHD4   A0A087YLB3   A0A3P9QEQ8   A0A093GSE3   A0A1S3JTA9   A0A0A0AI91   A0A3B4C600   A0A1S3JT90   A0A091NVW2   E2R2G9   A0A3Q1D1R4   A0A3Q3FLN4   A0A091RRG5   A0A3P8RIN5   A0A093D0N0   A0A3M0IZZ4   A0A091VGZ7   A0A3Q7S929   A0A3Q1ENV4   A0A3Q0SD84   A0A147AN78   A0A146XW75   A0A094K8W5   A0A091H0S1   A0A091TN75   F6WCS6   A0A093F1K3   A0A218V8B5   A0A096LXD1   G1N7H9   A0A093J9D9   A0A091UD59   A0A093ELD3   A0A093PCK9   A0A3Q3S3V1   A0A3B3R0X7   A0A0J7KPN9   A0A091P5G9   A0A091GC33   A0A3Q3LR76   A0A3S2MFV8   W5UBP8   H3B8T1   A0A3Q2YQH6   A0A3B4XSX5   T1HMD5   A0A3Q1ICH2  

Pubmed

19121390    22118469    26354079    24845553    25474469    25401762    + More
26823975    20566863    21347285    21282665    27289101    29451363    17554307    20431018    25835551    23371554    20360741    28648823    30249741    24508170    20075255    23542700    26561354    16341006    17495919    20838655    29240929    23127152    9215903   

EMBL

BABH01006123    BABH01006124    NWSH01000166    PCG78879.1    AGBW02008483    OWR53248.1    + More
KQ459564    KPI99657.1    ODYU01008628    SOQ52372.1    NEVH01002988    PNF41076.1    PNF41075.1    KK853510    KDR07074.1    GBBI01002905    JAC15807.1    RSAL01000250    RVE43489.1    GBHO01023628    JAG19976.1    GDHC01015899    JAQ02730.1    ABLF02034160    ABLF02034167    DS235750    EEB16301.1    KQ979814    KYN19022.1    KQ977510    KYN02254.1    ADTU01009656    ADTU01009657    ADTU01009658    ADTU01009659    ADTU01009660    ADTU01009661    KQ982169    KYQ59475.1    GGMS01016412    MBY85615.1    KQ976461    KYM84699.1    GL766449    EFZ15303.1    LJIJ01000015    ODN05841.1    GAKT01000062    JAA93000.1    KQ414868    KOC59971.1    KZ288260    PBC30443.1    GCES01040845    JAR45478.1    GCES01146627    JAQ39695.1    KL379514    KFP86341.1    AAMC01099633    AAMC01099634    AAMC01099635    AAMC01099636    AAMC01099637    AAMC01099638    AAMC01099639    AAMC01099640    AAMC01099641    AAMC01099642    GCES01040844    JAR45479.1    KQ041208    KKF29260.1    KB376112    EMC77737.1    AKCR02000019    PKK27577.1    LSYS01007908    OPJ70496.1    ABQF01016943    NNAY01000309    OXU29309.1    QOIP01000001    RLU26521.1    KK107260    EZA54210.1    KL225960    KFM05676.1    KK514747    KFP64368.1    IAAA01028002    LAA07543.1    AYCK01023323    AYCK01023324    AYCK01023325    KL216512    KFV69947.1    KL871964    KGL94199.1    KK644571    KFP98042.1    AAEX03002362    AAEX03002363    KK929324    KFQ44411.1    KL475252    KFV20338.1    QRBI01000197    RMB94344.1    KL411013    KFR02627.1    GCES01006327    JAR79996.1    GCES01040841    JAR45482.1    KL345170    KFZ55324.1    KL516762    KFO88285.1    KK460514    KFQ78863.1    KK619289    KFV50345.1    MUZQ01000030    OWK62136.1    KK603394    KFW07594.1    KK425888    KFQ87725.1    KK375602    KFV45805.1    KL225418    KFW71980.1    LBMM01004532    KMQ92317.1    KK668737    KFQ03217.1    KL448047    KFO79533.1    CM012439    RVE74974.1    JT411013    AHH39275.1    AFYH01020483    AFYH01020484    AFYH01020485    AFYH01020486    AFYH01020487    AFYH01020488    AFYH01020489    AFYH01020490    AFYH01020491    ACPB03015270    ACPB03015271    ACPB03015272   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000235965    UP000027135    + More
UP000283053    UP000007819    UP000009046    UP000078492    UP000078542    UP000005205    UP000075809    UP000078540    UP000094527    UP000005203    UP000053825    UP000242457    UP000261560    UP000265200    UP000008143    UP000261400    UP000265000    UP000053872    UP000190648    UP000007754    UP000215335    UP000279307    UP000053097    UP000002358    UP000261480    UP000261420    UP000261360    UP000002852    UP000261500    UP000053286    UP000028760    UP000242638    UP000053875    UP000085678    UP000053858    UP000261440    UP000002254    UP000257160    UP000261660    UP000265080    UP000269221    UP000053283    UP000286640    UP000257200    UP000261340    UP000002280    UP000197619    UP000001645    UP000054081    UP000261640    UP000261540    UP000036403    UP000053760    UP000221080    UP000008672    UP000264820    UP000015103    UP000265040   

PRIDE

H9IW91    E2R2G9   

Pfam

PF14492   EFG_II        + More
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU
PF00679   EFG_C
PF03764   EFG_IV

Interpro

IPR027417   P-loop_NTPase        + More
IPR035647   EFG_III/V       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR041095   EFG_II       
IPR009000   Transl_B-barrel_sf       
IPR004161   EFTu-like_2       
IPR000795   TF_GTP-bd_dom       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR005225   Small_GTP-bd_dom       
IPR000640   EFG_V-like       
IPR005517   Transl_elong_EFG/EF2_IV       

SUPFAM

SSF54211   SSF54211        + More
SSF52540   SSF52540       
SSF54980   SSF54980       
SSF50447   SSF50447       

Gene 3D

3.30.230.10    

ProteinModelPortal

H9IW91   A0A2A4K485   A0A212FHN7   A0A194Q262   A0A2H1WHK5   A0A2J7RJR5   + More
A0A2J7RJQ4   A0A067QQQ9   A0A023F2G3   A0A437AZG1   A0A0A9XJZ8   A0A146L7U6   J9K9F0   E0VSE5   A0A195E275   A0A151II41   A0A158N9J3   A0A151XGN0   A0A2S2R6I8   A0A151I459   E9IW59   A0A1D2NKS3   A0A087ZU40   T1DCE6   A0A0L7QNB0   A0A2A3EF81   A0A3B3CSR9   A0A3P9J9W7   A0A146XU24   A0A146P7F4   A0A091NA36   F6Z2L8   A0A146XUS9   A0A0F8CWX6   A0A3B5A655   A0A3Q2PQS7   R7VR65   A0A2I0MD14   A0A3Q2PRA9   A0A1V4JEA2   H0ZBZ7   A0A232FFU5   A0A3L8E1B7   A0A026WDP2   K7IZU7   A0A3B3XL63   A0A3B3XL40   A0A3B4UIP0   A0A3B4XQ79   A0A3B5RE45   A0A3B3TIG4   A0A087QWS2   A0A091LXT9   A0A2L2YHD4   A0A087YLB3   A0A3P9QEQ8   A0A093GSE3   A0A1S3JTA9   A0A0A0AI91   A0A3B4C600   A0A1S3JT90   A0A091NVW2   E2R2G9   A0A3Q1D1R4   A0A3Q3FLN4   A0A091RRG5   A0A3P8RIN5   A0A093D0N0   A0A3M0IZZ4   A0A091VGZ7   A0A3Q7S929   A0A3Q1ENV4   A0A3Q0SD84   A0A147AN78   A0A146XW75   A0A094K8W5   A0A091H0S1   A0A091TN75   F6WCS6   A0A093F1K3   A0A218V8B5   A0A096LXD1   G1N7H9   A0A093J9D9   A0A091UD59   A0A093ELD3   A0A093PCK9   A0A3Q3S3V1   A0A3B3R0X7   A0A0J7KPN9   A0A091P5G9   A0A091GC33   A0A3Q3LR76   A0A3S2MFV8   W5UBP8   H3B8T1   A0A3Q2YQH6   A0A3B4XSX5   T1HMD5   A0A3Q1ICH2  

PDB

5ANC     E-value=0,     Score=2360

KEGG

101740296    K14536 ribosome assembly protein 1 [EC:3.6.5.-] | (RefSeq) elongation factor Tu GTP-binding domain-c

GO

GO:0003924   GO:0005525   GO:0003746   GO:0016021   GO:0005829   GO:0042256   GO:0043022   GO:1990904   GO:0046039   GO:0006468   GO:0004674   GO:0008270   GO:0045211   GO:0005975   GO:0004553  

Length:

947

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00842999999999999

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.00034

outside

1  -  947

 

 

Pi

241.647661

Theta

197.14901

Tajima's D

0.58692

CLR

15.469766

CSRT

0.539323033848308

Interpretation

Uncertain