Gene

KWMTBOMO12543

Annotation

reverse_transcriptase_[Papilio_xuthus]

Location

Bomo_Chr21(+):6586444-6588489      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.757

CDS

ATGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACAGTAGACGCGATCCTTCGTGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGTGGGGTGGCTTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACATCCTGCCCTGGTCCGTGATAGGGAGGGCGCTGGAACGACATGGAGTGCCTCCCTACCTCCGCCGGCTGGTGGGTTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGATCCTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTAAGGGGTGCCCTCCTCCCGGGCCTGAGCGTAATCTGTTACGCGGACGACACGTTAGTCGTGGCCCGGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACCGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCCCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATTGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATCCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCTGTGTGGGGCCAGTCCCTGGCCGCGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGATTCTGGAAGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCTGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCCGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAACCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAACAGGAAACGACTTGTCGTTGCCGAGTGTCGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAACCCTGGCCCTCTAA

Protein

MAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNILPWSVIGRALERHGVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVAPSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAAGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWILEAEALAADYQWRADLRARGVARPSPCVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGTEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKTGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADLAQTLAL

Uniprot

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A2W1B333   A0A3S2N998   A0A0J7JWS3   A0A0J7KM11   A0A0J7KIY5   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KJH4   A0A0J7KQK3   A0A0J7KS67   A0A0J7KL06   A0A0J7KYD2   A0A0J7KIW1   A0A0J7KLH8   A0A0J7N7S8   A0A0J7KIM6   A0A0J7KPR0   A0A0J7KF37   A0A0J7NMN5   A0A0J7KRB8   A0A0J7KF40   A0A0J7NAV8   A0A0J7KWU5   A0A0J7K3R6   A0A0J7K3R2   A0A0J7KPZ3   A0A0J7K3F1   A0A0J7MY17   A0A0J7N0R3   A0A0J7KMG5   A0A0J7KFH2   A0A0J7KW81   A0A0J7NFZ0   A0A0J7KMU1   A0A2S2N8I2   A0A0J7JXX4   A0A0J7KQY4   A0A0J7MYL9   A0A0J7NJI3   A0A2S2PBP5   X1WJY4   J9LJ80   J9KNG8   A0A2S2PEU2   A0A2S2PEZ7   A0A0J7KSR8   A0A0J7KLK2   A0A2H8TIE5   A0A0J7NDI6   J9LVU7   A0A0J7KCZ9   J9KJG8   A0A2M4BBV9   A0A2M4BDI3   A0A2M4BC01   A0A2M4BC28   V5I8F3   A0A2S2P7D1   X1WSG8   X1WXT5   A0A2S2NJ82   A0A2H8TR36   A0A3Q0JIB3   A0A2M4ADW9   A0A0J7MWN5   A0A2H8THF8   A0A0J7K7P2   A0A0A1WPA4   N6TYN9   J9KPP8   A0A2M4CS98   F7IYV7   T1DCM0   A0A2S2NQQ6   F7IYU8  

Pubmed

12644555    28756777    9092665    25830018    23537049    24330624    + More

EMBL

AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    KZ150386    PZC71062.1    RSAL01000481    RVE41577.1    LBMM01024063    KMQ82623.1    LBMM01005707    KMQ91279.1    LBMM01006954    KMQ90166.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01006657    KMQ90417.1    LBMM01004272    KMQ92618.1    LBMM01003679    KMQ93242.1    LBMM01006063    KMQ90967.1    LBMM01002052    KMQ95336.1    LBMM01006725    KMQ90373.1    LBMM01005948    KMQ91066.1    LBMM01008682    KMQ88705.1    LBMM01007036    KMQ90099.1    LBMM01004634    KMQ92224.1    LBMM01008448    KMQ88867.1    LBMM01003245    KMQ93755.1    LBMM01003988    KMQ92922.1    LBMM01008422    KMQ88894.1    LBMM01007425    KMQ89740.1    LBMM01002480    KMQ94776.1    LBMM01015018    KMQ84954.1    LBMM01014956    KMQ84982.1    LBMM01004505    KMQ92346.1    LBMM01015025    KMQ84953.1    LBMM01014122    KMQ85315.1    LBMM01012412    KMQ86235.1    LBMM01005465    KMQ91492.1    LBMM01008278    KMQ89009.1    KMQ94772.1    LBMM01005474    KMQ91485.1    LBMM01005216    KMQ91703.1    GGMR01000779    MBY13398.1    LBMM01021647    KMQ83033.1    LBMM01004262    KMQ92649.1    LBMM01013668    KMQ85535.1    LBMM01004261    KMQ92650.1    GGMR01014195    MBY26814.1    ABLF02011238    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02005203    ABLF02041316    GGMR01015354    MBY27973.1    GGMR01015159    MBY27778.1    LBMM01003575    KMQ93366.1    LBMM01005845    KMQ91162.1    GFXV01002090    MBW13895.1    LBMM01006496    KMQ90570.1    ABLF02034925    LBMM01009527    LBMM01009515    KMQ88059.1    KMQ88067.1    ABLF02041886    GGFJ01001369    MBW50510.1    GGFJ01001727    MBW50868.1    GGFJ01001370    MBW50511.1    GGFJ01001439    MBW50580.1    GALX01004785    JAB63681.1    GGMR01012748    MBY25367.1    ABLF02004597    ABLF02041324    ABLF02004854    ABLF02041317    GGMR01004600    MBY17219.1    GFXV01003903    MBW15708.1    GGFK01005660    MBW38981.1    LBMM01015285    KMQ84870.1    GFXV01001748    MBW13553.1    LBMM01012322    LBMM01012138    KMQ86282.1    KMQ86387.1    GBXI01013438    JAD00854.1    APGK01005465    KB736249    ENN83233.1    ABLF02009991    ABLF02009992    ABLF02054952    GGFL01004044    MBW68222.1    AB593327    BAK38648.1    GALA01001777    JAA93075.1    GGMR01006838    MBY19457.1    AB593321    BAK38639.1   

Proteomes

UP000036403    UP000283053    UP000007819    UP000079169    UP000019118   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A2W1B333   A0A3S2N998   A0A0J7JWS3   A0A0J7KM11   A0A0J7KIY5   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KJH4   A0A0J7KQK3   A0A0J7KS67   A0A0J7KL06   A0A0J7KYD2   A0A0J7KIW1   A0A0J7KLH8   A0A0J7N7S8   A0A0J7KIM6   A0A0J7KPR0   A0A0J7KF37   A0A0J7NMN5   A0A0J7KRB8   A0A0J7KF40   A0A0J7NAV8   A0A0J7KWU5   A0A0J7K3R6   A0A0J7K3R2   A0A0J7KPZ3   A0A0J7K3F1   A0A0J7MY17   A0A0J7N0R3   A0A0J7KMG5   A0A0J7KFH2   A0A0J7KW81   A0A0J7NFZ0   A0A0J7KMU1   A0A2S2N8I2   A0A0J7JXX4   A0A0J7KQY4   A0A0J7MYL9   A0A0J7NJI3   A0A2S2PBP5   X1WJY4   J9LJ80   J9KNG8   A0A2S2PEU2   A0A2S2PEZ7   A0A0J7KSR8   A0A0J7KLK2   A0A2H8TIE5   A0A0J7NDI6   J9LVU7   A0A0J7KCZ9   J9KJG8   A0A2M4BBV9   A0A2M4BDI3   A0A2M4BC01   A0A2M4BC28   V5I8F3   A0A2S2P7D1   X1WSG8   X1WXT5   A0A2S2NJ82   A0A2H8TR36   A0A3Q0JIB3   A0A2M4ADW9   A0A0J7MWN5   A0A2H8THF8   A0A0J7K7P2   A0A0A1WPA4   N6TYN9   J9KPP8   A0A2M4CS98   F7IYV7   T1DCM0   A0A2S2NQQ6   F7IYU8  

PDB

5IRG     E-value=0.0156391,     Score=91

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

511

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.591829999999998

Exp number, first 60 AAs:

0.3758

Total prob of N-in:

0.02209

outside

1  -  511

 

 

Pi

47.290895

Theta

31.618982

Tajima's D

0.123875

CLR

0.400639

CSRT

0.408479576021199

Interpretation

Uncertain