Silkworm Genome Informatics Database

Gene

KWMTBOMO12542

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr21(+):6515354-6521574 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.5

CDS

ATGGCACTTGTTAAAAAATTATTACCCCAGGAGGGTACCTCCCGCTCCGCGGGAGGAGAATCCCTCCGTGCGGTCGAGGAATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGGCAAACAATGCCACGATGAAGGGGGCGACAGCACGGGTCGCGTAAGGGATCGAGTTCCCACCGTGCTCCTCGAACGATGCGACAGCCTGTTCTCGCTTCACTCGGCGCGAAGCTCCGCGAGGGGCGACGCGTCCAGTGGGAGGGAGACGCCAGTGCTGTTCGCAGACAGCGCGCAAAAGCGGACTCGGCGGAAGCGGAAGTCGGCTCGACGGCCGGCGTCCTCCGCTCCGTCTGACTCGTCCGAGGGTGAGCCTGCCAGCGCCAAATATATGGCGTTGGCGGAAGGGCCGGCGACTGCTGCGGCGTCGCCCGCCACTGATTTAGAGACTCGTTCGTCTCGCGGACTGGCTGCTGCCTCCTCGGCGCAAACCAGGGCCGCCCGCCGTGAGGCCAACGAACCTATAAAAAACGGAGAGGTTGAGCATCTGGAGCGCTCCCTTACCGAGGTGGGTCCCTCCGACCCCCTCAGAACATGTGATATCGCCCAGAAATTAGTGGCTGCGGTAGTGAAGAAGTCGGCCAAGGGCCTAAAGGGCGACTGCGTGCGGGCCCTAAAATCGGCTACCTCCTCCCTGGAGGAGCAAATGGCAATTGCAGTAAGCCGCACCACGAATGATGAAACGGTGGGTCTACGAAAAACAGTGGACCTGCTGCACGCCCGACTGGCCCAAATCAGTGCCGAAAACGATCGCCTTCGGCAGGAGAACGGGCAGATGAAGGTCGACATGGCTGAGATGCGCACGCTCGTGAACGACTTAGTCGAGAAGCAGTGCAACTCGGCCCCTGCATCTACTCCGCTCGAGACAGAAGAGGCCAACGAGGCCGAGGAGTTGAGGCGGCGGCTCCTAATACAGGAGGCACGCAGCTCGAACGTGGAGCGTGCGAGACCGCCCCTCGCTCACGAGAGAAAGGGAGAAGCACCAACACCGGCACCCCGCAGGATCATGAAGACGACCGCCAGCTCTAACGCGGTATCAAGGGCCACCAAAACATATGGCGGCCCCAAAACCAAAATGGGCGTAACTCCTGCGGCACGTCCCGCCGCGATTGCTGCTGCGAGGGCAACAACGTCCGCCCCTCCGAAGACACCGGCGTCTGCTCCTGCCCCTACCCAGCCTGTGAAGGCGGGGCCTGGCAGGAGCCGGACTAAGAAAAATAGGAGCGTCAACGCCGCAAAACCGGCCCCGACCCCCCAGCCCCGCCCACTGCCCCCTGCCCCGGCCAATATGGAAGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCTAGGAAAGTGGCGGCGCCTGCTGCGCCGCGTCCCAAGCCCGCCCCTACGGCCACCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCAAAAAGGAAGAAGAGGAGCACGCAGAAAGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTATTGGAGCTGCTGCCGGCCGCCAAAGAAAAGGGCATCACGTACCACGACGTGATGACCCAGGCGCGCGGCGGCGTAAATGTGGACGCCCTCGGCGTGGAGGGTGGCGTCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTTTGGAGTGCCCCGGCGAAAACACGAACGCCGCGGCCGAAAAACTGGCGGCCCGGCTTCGAGAAATTCTGCCGGACCCCGAGATGGTGCGCATCGCGCGGCCCGTGAAGATGGGAGAAGTTAAAATCACGGGCCTCGACGAGTGCGCCACAAAGGAGGAGGTCGCCGCAGCCATTGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGAGAGCTCCGGGTGACATATTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCGATTGCAACGGCGACCCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAGCTGCAGGATGCCAGGCCGTGGCGTTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGGCTTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGTACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCCAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACAAAAACGAGGAGGGGCGGAAAGAAAAAGAAGCCGGCTGCAAAAAGGGCAGCCGGTGAGTCAGCTCCCGCCGCGGCACCAGAGCAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGATGTTGCTGTCGCTGCGGAGCCGTATTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATTGTGTTGAGACAGTCCGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCCGAATTCGAACGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCGCCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGATCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGCAATCTCACGTGGACGTTACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGGTACGTCCGATTCGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGTGAGGAAGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCATTCTGGTGGTCGCCCGAGATCGCAAGACTCCGAGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCCGTAGTCGCGACGCAACGTTCGCGGAGACGGCGGCCCGGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGTTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAGTTTCCGCGCTTTTCCCGCCAGCAGCGGGGGGAGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAAAATGAGAGCGAAGGACACGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGCTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATTGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATTGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGACGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCTGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGTCCCCTCCCCGGGCTGAGCGTAATATGTTACGCCGACGACACGTTGGTCGTGGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACTAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGATAAAACCCAGGCCCTGCTTTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTTGGGGTGACCGGTCTTCGGTACCTCGGCCTCGAACTGGATAGTCGGTGGAACTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGACTGATGGCGACGGCCGGCTCTCTGAGCCGGCTGCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGGGCTCCCGTATGGTGCCGCGCCCTGACCCGCAAGAACGTCGCGGCTCTGCGACGTCCGCAGCGTGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACAGGCTCCACTCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTAACGCAGATGCTTACCGGCCATGGTTGTTTCGGCCGGTACTTGCACAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MALVKKLLPQEGTSRSAGGESLRAVEESAARCPTVSGGGKQCHDEGGDSTGRVRDRVPTVLLERCDSLFSLHSARSSARGDASSGRETPVLFADSAQKRTRRKRKSARRPASSAPSDSSEGEPASAKYMALAEGPATAAASPATDLETRSSRGLAAASSAQTRAARREANEPIKNGEVEHLERSLTEVGPSDPLRTCDIAQKLVAAVVKKSAKGLKGDCVRALKSATSSLEEQMAIAVSRTTNDETVGLRKTVDLLHARLAQISAENDRLRQENGQMKVDMAEMRTLVNDLVEKQCNSAPASTPLETEEANEAEELRRRLLIQEARSSNVERARPPLAHERKGEAPTPAPRRIMKTTASSNAVSRATKTYGGPKTKMGVTPAARPAAIAAARATTSAPPKTPASAPAPTQPVKAGPGRSRTKKNRSVNAAKPAPTPQPRPLPPAPANMEEAWTTVVRRGPRKVAAPAAPRPKPAPTATAPRQEGRAEPRGQKGRRGARRKPRAPRSAAVVLELLPAAKEKGITYHDVMTQARGGVNVDALGVEGGVKVRQTANGARLLECPGENTNAAAEKLAARLREILPDPEMVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRVTYSGTRTAWARCPIATATLLATPPQGRPSDSPGRLRVGWVVAHVQLQDARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKKKPAAKRAAGESAPAAAPEQPQGGTDEGAMDDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIVLRQSAALPPLDMVARGPGYVAARIDGTVVIGAYFSPNRSLAEFERFLGGLEALLHRLGSRPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIAIGLCLLNRGTVATCVRWNGQSHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRSRDATFAETAARLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVSALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSKMRAKDTAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGTMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDSRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCRALTRKNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRLHSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Uniprot

A0A0J7KQK3 A0A0J7KFH2 A0A0J7N0R3 A0A0J7KRB8 A0A3S2LNH8 A0A0J7NFZ0 + More
A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01008278 KMQ89009.1 LBMM01012412 KMQ86235.1 + More
LBMM01003988 KMQ92922.1 RSAL01003504 RVE40273.1 LBMM01005474 KMQ91485.1 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000283053 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7KFH2 A0A0J7N0R3 A0A0J7KRB8 A0A3S2LNH8 A0A0J7NFZ0 + More
A0A139WAH4

PDB

1WDU E-value=2.4469e-10, Score=163

KEGG

105842745 no KO assigned | (RefSeq) transcription initiation factor TFIID subunit 4-like

GO

GO:0008270 GO:0003676 GO:0003964 GO:0006468 GO:0004674 GO:0016021 GO:0045211 GO:0005975 GO:0004553

Length:

1836

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15922

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1836

Pi

1.379044

Theta

1.280821

Tajima's D

0

CLR

126.963898

CSRT

0.426528673566322

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree