Silkworm Genome Informatics Database

Gene

KWMTBOMO12540

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr21(+):6486084-6492068 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.706

CDS

ATGATGGACAATTGTGCAAAGTTAGTACCCCAGGAGGGTACCGCCCGCGAGTCGGGCGGAGAATCCCTCCGTGCTTCCACCTCAGTGGAAGCACGCTGCCCCACGTATTCTGGGGGGGGCAACAATTGTCAGGATGAAGGAGGCTGTGCGACGGGCAGCGGAATTCCCGTCGAACCGAGGCGCTCCCCGATCGCCGGCTCGATGCGCTCTGCGCTCGCCAGCGACTCGGGTGCAGTCAACCCCACCAGACCATCGGTGGGGAAAAAGAGGGGGCGAAGAAAAACCCCATTGCCATCTTCAAATGACGGCAGCGCGTCATCCTCCGGCACTGAGGTGCCGGAAAAGACGATGGCCATCGAGGAGGTGACTCCGGTGGTTTCGGGGTCTGCTGCTGCGTCGGAAGACGCGATGCCTGCTCCCCAGTGGGCACCAGTAAGGAGGAGGGGCGCGGTGTCACCGGCGACGTCAGTGGAGTCGATGTCGACGTCGGCTGCGTCCCTGGCTAGCGGGGACGAGACGTTCCGGGACCTCGACCTTGCGCTTGTTAATTTGGGTAAGCTGCTGTCGACTGTGGCTGCCAAGGGCGCCGAGCCAGGCAGCAGTTACCGGAAAAGACTCCGGGAGGCAGCCGCCATGGTTAAAACGAGGCTGATCCCCACCATGTCCAAGCTCCATGACTTGGTAGCGAGCCGAGAGGTGGAGAGCAAAGGTCACGTCTCTCAGTTTGACTCCAGAGAGAGTCACATCCCGGGAGACACCCCGGCATTGCGGGGAGGGACTCCCCTGTTGCCGAGGCCCGCGCTGCCATGCCCTGGGCCCCCCGCGGGGGCGATGGATACTACTGTGCACTTGCGGTCCGCGATGAGTGCGGTGGCACCCATGCCAGAGCCCACCTCCGAGGCCCCTGTTTCGCTGGCGCCTACTCCTGCGATCCCTCGCCCTCCACGAAGGGTTGAGCTAAGGCCTGCGCCACCTCCGCGGATATCAGCCGCCCCTGCCTCTGCACGTAGAGGAAAGCTAAACCCTACGCCAGCGCGGGCTGAGGACATCCGTTCGCCACTGGCGAGGATGGTGGATGAGTGGCCAACGCTACCGCGGCCCAGGCCTGCAGAGCCGCCTCTTTCGCCCTCGCGTGCTGCGGGGTCACAGAGGCCATACAACATGGCTGCTGGGACGGAAGAAGTAGACCACTCCCTCCCAAGCAGAGAGGAAATGGTGGCCTGCATTTCGCGGGCGGTGGCTGTTGAGGTTGGCAAGCACTTTGCCAGCCTCGAGAAGATACTCCGCTCCTCCAATGGCTCCGGAGACTGTGTCCCGGCACCAACAAACGCCGCCGTCCCGCGGGGCCAGGCCGCCCGGCCGACCTCCACCCCCACCTCATCCACAAGGTTGGCACGACGTGGAGGCCGCAATCAAAATAACAGGGGTACGGGTGCCCAAAATCCTGCCCTGAAATCCCAGCCCCGTCCCCTTCCTCCTCCCCCGTCAAGCATGGACGAGGGTTGGACGGAAGTGGTGAAGCGGGGCAAGAAAGGTAGGCAACAGACAGAGGCTCTGGCAGCTCCCAGAGGGGGTCGAGCGCTGACCGCTGCAGCCCGAAGCACAGAGCTGGTGGCCGTGGCTGCTCCTCGCGAGAGTCGAGCACCGGCCACCAACAAGAAGCAGAACGCCAAGAAGAAGAAGACGCGCGCAGCGCGGTCGGCTGCCGTCGTAGTGACGTTGCTGCCAGCCGCCGCCGAAAAGGGCCTCACCTATAATGAGGTGATGGCCCAGGCGCGCGCGGCCGTCAACTTAGCAGAAATCGGGGCAGAGGAAGGCCTCCGCTTCCGGCATACCGCCAATGGAGCGAAGCTGCTGGAGTGTCCCGGTGCGGATAGTTCTGGTGTCGCAGACAGACTAGTGGCGACGCTCCGCGTGGCGCTGCCGGAGAATGAGGTGCGCGTGCACAGGCCGGTGAGGATGGCCGAGATCAGGATCACCGGCCTGGACGACTGCGCCACCAAGGAGGAGGTGGCAGCTGCGATAGCCGCCCAAGGTGGATGTGCCTTGGAGAGCGTGACCGTGGGCGAACTTCGCTCAGGATACTCCGGAGCTAGGTCAGCGTGGGCGCGCTGCCCTGTGGAGGCTGCCACTTCCTTGGCTACTCCTCCGCCGGGAAGGTCAATGGGGGATCCGGGGAGACTGCGCGTGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCACGTGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGGCACGGCCTCGCTAGGTGCACCAGCTTAGTTGACCGCAGCGGTCTATGTTTCCGCTGCGGCCAACCGGGTCATAAAGCGGCGTCCTGCACGGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCTGGGCGTAGGGCAAACCACCGAGCGGGAGGCAAGGCTTGCTTCCCGTCCGGTGTTAATACTGAACGCAACCGGCGCCGAAAATCAAGGCGCCGGCAGAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAATGTTGCAATCCCCGCTGCGGCGCCGGTGCCGGAGGGTGGGGGCAGCGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTCGGGGACGATGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGACGATCCCCCCCTTGGCGATGGTGACCAGGGGCCAAGGGTTCGTCGCGGTGCAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAATAGGCCTACTGTCGAGTTCGGGCATTTCCTGGACGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTCGCGGGGGACCTCAACGCGAAGTCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTGTTGGAGAGGTGGGCGAACGTGGCCGGCCTCTATTTGGTGAATAGAGGGTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTGTTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCACGCCGTATCCGCGACTGGAGAGTTTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGTCCACGGGGACCACCCCCGTGGTGCGTCCCGGTCATTCCCCAAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCAGTTGAGGTCGAGGACGAAGCGAGGTGGTTCCGGGACACGATGCGTCGCATCTGTGACGTGTCGATGCCCCGGATTAGCCCTCGACCTCCCAATCGCCAAGTGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGTGGAGTGCGTTCGGGCAAGGCGCCAGTGCGCGAGGCATCGCCGCCGTCGCTTGCCGCGGCGCAACGATCCGGTGGCGTTCGCGGTGGTAGAGGCCCAGCTGTACGGCGCATTTCGCGTCGCACAGAGGGCGTTGCAGCTGGCCATCAGAAGAGCCAAGGACCAACACATGGAGAGTCTCCTGGAGACGCTGGATGAGGATCCGTGGGGGCGACCCTATCACATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCAATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCAGGGGGGATTTGTCGCTCCCGCTATGGGCGCGCCGCCGGAATACGACGGCGACGCCCCTGCTGAGGTGCCCCATATAACAGGGGCGGAGCTCCGTGTGGCAGTACGCAAAATGTGCGCAAAGGACACTGCACCTGGCCCGGACGGCGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGGCTTTATAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTTGTGCTATTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTGCCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGTCGCTCAACAGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGATGGGGTCGTACATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGGTGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCGGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTGCTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGAGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGGCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCTATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCTACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAGCGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCTAGCCCTGGCCCTCTAA

Protein

MMDNCAKLVPQEGTARESGGESLRASTSVEARCPTYSGGGNNCQDEGGCATGSGIPVEPRRSPIAGSMRSALASDSGAVNPTRPSVGKKRGRRKTPLPSSNDGSASSSGTEVPEKTMAIEEVTPVVSGSAAASEDAMPAPQWAPVRRRGAVSPATSVESMSTSAASLASGDETFRDLDLALVNLGKLLSTVAAKGAEPGSSYRKRLREAAAMVKTRLIPTMSKLHDLVASREVESKGHVSQFDSRESHIPGDTPALRGGTPLLPRPALPCPGPPAGAMDTTVHLRSAMSAVAPMPEPTSEAPVSLAPTPAIPRPPRRVELRPAPPPRISAAPASARRGKLNPTPARAEDIRSPLARMVDEWPTLPRPRPAEPPLSPSRAAGSQRPYNMAAGTEEVDHSLPSREEMVACISRAVAVEVGKHFASLEKILRSSNGSGDCVPAPTNAAVPRGQAARPTSTPTSSTRLARRGGRNQNNRGTGAQNPALKSQPRPLPPPPSSMDEGWTEVVKRGKKGRQQTEALAAPRGGRALTAAARSTELVAVAAPRESRAPATNKKQNAKKKKTRAARSAAVVVTLLPAAAEKGLTYNEVMAQARAAVNLAEIGAEEGLRFRHTANGAKLLECPGADSSGVADRLVATLRVALPENEVRVHRPVRMAEIRITGLDDCATKEEVAAAIAAQGGCALESVTVGELRSGYSGARSAWARCPVEAATSLATPPPGRSMGDPGRLRVGWIAAHVRLQEPRAWRCLRCFSTGHGLARCTSLVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSGVNTERNRRRKSRRRQKRRLARGALANVAIPAAAPVPEGGGSGNLNHSARAQDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDATIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLDGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANVAGLYLVNRGSVATCVRWQGESVVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADVHGDHPRGASRSFPKWALKRLNKELLMEASTVAAWAPMRPHPVEVEDEARWFRDTMRRICDVSMPRISPRPPNRQVYWWSPEIAQLRVECVRARRQCARHRRRRLPRRNDPVAFAVVEAQLYGAFRVAQRALQLAIRRAKDQHMESLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEQGGFVAPAMGAPPEYDGDAPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGCRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHDGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVGAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNVGGPDRVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLEAWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGSDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Uniprot

NA

ProteinModelPortal

NA

PDB

1WDU E-value=1.70396e-11, Score=174

KEGG

101746779 no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003676 GO:0008270 GO:0006468 GO:0004674 GO:0016021 GO:0045211 GO:0005975 GO:0004553

Length:

1904

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.44076

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1 - 1904

Pi

1.653361

Theta

1.913126

Tajima's D

0

CLR

115.612988

CSRT

0.414029298535073

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree