Gene

KWMTBOMO12520

Pre Gene Modal

BGIBMGA001462

Annotation

CRAL-TRIO_domain-containing_protein?_partial_[Manduca_sexta]

Location

Bomo_Chr21(-):5753977-5764043      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.074 Nuclear   Reliability : 1.862

CDS

ATGCAAATCGACTACGAAAGAGACATTTCGTTGATCAGAGAATGGCTCGCTAAGGAGGATTACCTGCCGCAAGACCTTGGTGACATGCTGTTGAAAAAATTCATTCACAGCTGCTACGGAAGCTTGGAAAAAACGAAGCAATGCATCGACAAGTTCTGCGTGGGTCGCACCAACACTCCAGAACTGTACACGTCCAGAGACCCTACGGCAAGCAAATTGAAAACCGCCTTTTCTATTACGAGTGTTACCACATATGAAGCCGGTGAAGACGAAATTCTGATACACGAACTTGACGATCCTAACCTAGAGAACTTCGAATTCTACGACCTAGTGAAGACATTCGCGATGCAAGCAGACTACTGGCTCAACAACATCCCTCTGTTCCCACGAGGACACATTGTGTTGATCGACGCGAAACACTTCTATCTGAAGATAGTGTCCCGTGTCAATATATTTTTCTTTAAGCAGTTCTTGGTATATTTGCTTGAGGCGATGCCAGTCCGCATAAAACAGATACATGTTTACAACAGCCCGGCTTACTACGACAAACTGTTCTCACTCGTTAAACCTGTACTGCCTCAAGAAATTTGTGATATGATAAAATTTCATCTTGAAATAGAAGGCTTGTACGCGCATGTTGATAAAAAGTATCTCCCCGTAGAGTTGGGAGGAGAAGCTCCCAGTATGAAGGATCAACAAAAGAAATGGGTTAAAATAATAACAGAGAGCAGAGACATGTATTTGAATGATAATCTGTGGAAAGCTGATATGAAGAAGCGAGCGAAGTCGAAAGGAGCCGACACCGCAATGAATGGATCTTTCAGAAGTCTATCGATAGATTAA

Protein

MQIDYERDISLIREWLAKEDYLPQDLGDMLLKKFIHSCYGSLEKTKQCIDKFCVGRTNTPELYTSRDPTASKLKTAFSITSVTTYEAGEDEILIHELDDPNLENFEFYDLVKTFAMQADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVLPQEICDMIKFHLEIEGLYAHVDKKYLPVELGGEAPSMKDQQKKWVKIITESRDMYLNDNLWKADMKKRAKSKGADTAMNGSFRSLSID

Uniprot

H9IW31   A0A0S2Z396   I4DKQ6   A0A194Q4S6   I4DKQ5   A0A3S2NWM5   + More
A0A1E1WH83   A0A2H4RMU3   S4PL30   A0A0N1PG26   A0A212FD20   A0A2A4JN26   A0A2H1W9W6   A0A0S2Z2V2   A0A2H4RMQ4   I4DRD0   A0A2H4RMS0   A0A2H1WE03   A0A0N1IE49   A0A194Q087   I4DNH4   A0A0S2Z365   A0A2A4JMB1   A0A0S2Z3M7   A0A2H4RMS2   A0A212FD39   A0A2H4RMW1   A0A3S2NFV8   A0A2H1WC89   A0A2A4JN90   A0A2H1W9M6   D6W9C3   A0A3S2THW5   A0A1E1WIG6   A0A2A4JM74   A0A194RPE5   U4UHT5   A0A194PYI0   A0A2H4RMV2   I4DK14   A0A2H4RMQ7   H9IW30   A0A1B6DYJ3   A0A224XHT0   A0A1Y1LMD7   A0A1B6LD20   A0A1B6KYX9   R4G5W8   A0A212F142   A0A0P4VRB9   A0A023F9V9   V9IMD6   A0A1Q3FPS4   A0A1Q3FPU1   A0A182PSQ0   Q16X09   A0A182VRB8   Q7QCW6   A0A1S4FLA7   A0A182JQF5   A0A437B7K5   A0A182RPL0   A0A182VFB9   A0A182LGG4   A0A182SVF8   A0A182FR04   A0A182TN82   A0A2M4CTS7   A0A182HTQ4   A0A182XHN6   A0A084W7A6   A0A2M4BVM6   T1HQM6   A0A182MSW7   A0A182XW48   A0A1Y1JXE4   A0A154PLP4   B4PYR4   A0A2S2Q3J3   A0A146LCG9   W8BTC1   A0A182N751   A0A1W4VFQ6   A0A182IXF0   A0A182Q2B4   A0A0L7LMY9   A0A2A3EJJ4   A0A2H4RMW5   B4I0C0   Q9W408   K7J0H5   A0A1Q3FQZ8   A0A194R6X1   E2BL75   A0A2W1C113   B3NXR4   A0A212FMC8   A0A0V0G5X2   A0A2H1V8U5   A0A0J7KK55  

Pubmed

19121390    25684408    22651552    26354079    29136137    23622113    + More
22118469    18362917    19820115    23537049    28004739    27129103    25474469    17510324    12364791    14747013    17210077    20966253    24438588    25244985    17994087    17550304    26823975    24495485    26227816    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20075255    20798317    28756777   

EMBL

BABH01006015    KT943551    ALQ33309.1    AK401874    BAM18496.1    KQ459585    + More
KPI98410.1    AK401873    BAM18495.1    RSAL01000128    RVE46498.1    GDQN01004699    JAT86355.1    MG434640    ATY51946.1    GAIX01004245    JAA88315.1    KQ460622    KPJ13520.1    AGBW02009116    OWR51639.1    NWSH01000993    PCG73186.1    ODYU01007188    SOQ49746.1    KT943557    ALQ33315.1    MG434607    ATY51913.1    AK405067    BAM20470.1    MG434619    ATY51925.1    ODYU01008032    SOQ51298.1    KPJ13521.1    KPI98409.1    AK402926    BAM19464.1    KT943559    ALQ33317.1    PCG73187.1    KT943547    ALQ33305.1    MG434621    ATY51927.1    OWR51640.1    MG434663    ATY51969.1    RVE46496.1    ODYU01007570    SOQ50452.1    PCG73188.1    SOQ49747.1    KQ971312    EEZ98182.1    RVE46499.1    GDQN01004255    JAT86799.1    PCG73185.1    KQ459896    KPJ19382.1    KB632216    ERL90171.1    KPI98392.1    MG434652    ATY51958.1    AK401632    BAM18254.1    MG434608    ATY51914.1    BABH01006016    BABH01006017    BABH01006018    GEDC01006573    JAS30725.1    GFTR01004381    JAW12045.1    GEZM01051567    JAV74799.1    GEBQ01018603    JAT21374.1    GEBQ01023362    JAT16615.1    GAHY01000155    JAA77355.1    AGBW02010967    OWR47462.1    GDKW01002174    JAI54421.1    GBBI01001004    JAC17708.1    JR052704    AEY61761.1    GFDL01005450    JAV29595.1    GFDL01005425    JAV29620.1    CH477548    EAT39147.1    AAAB01008859    EAA07769.3    RVE46497.1    GGFL01004487    MBW68665.1    APCN01000577    ATLV01021179    KE525314    KFB46100.1    GGFJ01007984    MBW57125.1    ACPB03026421    AXCM01000441    GEZM01098136    JAV53982.1    KQ434973    KZC12772.1    CM000162    EDX01000.1    GGMS01003091    MBY72294.1    GDHC01013872    JAQ04757.1    GAMC01006332    JAC00224.1    AXCN02000326    JTDY01000521    KOB76812.1    KZ288238    PBC31369.1    MG434666    ATY51972.1    CH480819    EDW52951.1    AE014298    AY113341    AAF46152.1    AAM29346.1    GFDL01005015    JAV30030.1    KQ460878    KPJ11611.1    GL448949    EFN83561.1    KZ149898    PZC78656.1    CH954180    EDV47365.1    AGBW02007651    OWR54902.1    GECL01003431    JAP02693.1    ODYU01001275    SOQ37270.1    LBMM01006207    KMQ90808.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000007151    UP000218220    + More
UP000007266    UP000030742    UP000075885    UP000008820    UP000075920    UP000007062    UP000075881    UP000075900    UP000075903    UP000075882    UP000075901    UP000069272    UP000075902    UP000075840    UP000076407    UP000030765    UP000015103    UP000075883    UP000076408    UP000076502    UP000002282    UP000075884    UP000192221    UP000075880    UP000075886    UP000037510    UP000242457    UP000001292    UP000000803    UP000002358    UP000008237    UP000008711    UP000036403   

PRIDE

H9IW31    H9IW30    Q9W408   

Pfam

PF00650   CRAL_TRIO

Interpro

IPR001251   CRAL-TRIO_dom        + More
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036865   CRAL-TRIO_dom_sf       
IPR011074   CRAL/TRIO_N_dom       

SUPFAM

SSF46938   SSF46938        + More
SSF52087   SSF52087       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9IW31   A0A0S2Z396   I4DKQ6   A0A194Q4S6   I4DKQ5   A0A3S2NWM5   + More
A0A1E1WH83   A0A2H4RMU3   S4PL30   A0A0N1PG26   A0A212FD20   A0A2A4JN26   A0A2H1W9W6   A0A0S2Z2V2   A0A2H4RMQ4   I4DRD0   A0A2H4RMS0   A0A2H1WE03   A0A0N1IE49   A0A194Q087   I4DNH4   A0A0S2Z365   A0A2A4JMB1   A0A0S2Z3M7   A0A2H4RMS2   A0A212FD39   A0A2H4RMW1   A0A3S2NFV8   A0A2H1WC89   A0A2A4JN90   A0A2H1W9M6   D6W9C3   A0A3S2THW5   A0A1E1WIG6   A0A2A4JM74   A0A194RPE5   U4UHT5   A0A194PYI0   A0A2H4RMV2   I4DK14   A0A2H4RMQ7   H9IW30   A0A1B6DYJ3   A0A224XHT0   A0A1Y1LMD7   A0A1B6LD20   A0A1B6KYX9   R4G5W8   A0A212F142   A0A0P4VRB9   A0A023F9V9   V9IMD6   A0A1Q3FPS4   A0A1Q3FPU1   A0A182PSQ0   Q16X09   A0A182VRB8   Q7QCW6   A0A1S4FLA7   A0A182JQF5   A0A437B7K5   A0A182RPL0   A0A182VFB9   A0A182LGG4   A0A182SVF8   A0A182FR04   A0A182TN82   A0A2M4CTS7   A0A182HTQ4   A0A182XHN6   A0A084W7A6   A0A2M4BVM6   T1HQM6   A0A182MSW7   A0A182XW48   A0A1Y1JXE4   A0A154PLP4   B4PYR4   A0A2S2Q3J3   A0A146LCG9   W8BTC1   A0A182N751   A0A1W4VFQ6   A0A182IXF0   A0A182Q2B4   A0A0L7LMY9   A0A2A3EJJ4   A0A2H4RMW5   B4I0C0   Q9W408   K7J0H5   A0A1Q3FQZ8   A0A194R6X1   E2BL75   A0A2W1C113   B3NXR4   A0A212FMC8   A0A0V0G5X2   A0A2H1V8U5   A0A0J7KK55  

PDB

3W68     E-value=7.88965e-10,     Score=151

KEGG

101746774    no KO assigned | (RefSeq) alpha-tocopherol transfer protein-like

GO

GO:0005215   GO:0005622   GO:0006810   GO:0016020   GO:0008270   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

Length:

280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.826099999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10231

outside

1  -  280

 

 

Pi

137.341927

Theta

143.741586

Tajima's D

-0.603644

CLR

0.619102

CSRT

0.216439178041098

Interpretation

Uncertain