SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12517
Pre Gene Modal
BGIBMGA001510
Annotation
PREDICTED:_DENN_domain-containing_protein_4C_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr21(+):5686474-5717047      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.771
 

Sequence

CDS
ATGTCTTGGAGCAAACAACCTTTGAACATACCAGTAGAAAGATATATTACACATTTACTAGAGGAAGTGCCTTTCCCAGAACCCACCATTTTGCTGCAGCTATCCCCATCGAACCCGAGCGACAGAGTCATAGTGACGCGCCGCGACGATCAGCCCCTGGTCCGCAGCGGGGCGAGCTTCAGGCAGCTTCTCTTAAATCTGGGACCAGACAACTGTTTGTTATTACTGGCCCTCGCCATTACCGAGCAAAAGATTCTCATACATTCACTAAGGCCCGATACACTAACAGCAGTCTCAGAAGCAGTATCAAGTTTACTGTTTCCATTCAAATGGCAATGTCCTTACATACCGTTATGTCCATTGGGTTTAGCAGAAGTATTACACGCGCCACTGCCGTATTTAATAGGGGTCGATTCGAGATTCTTTGATCTTTACGAGCCCCCTCCAGACGTTACGTGCGTGGATCTAGACACTAACAACATCACGGTATGCGAATCGCAACGTAACAATATATCGATAAAATTATTACCAAAAAGACAAGTTAAAGCTTTGAAACAGACTTTGGAAACATTATACGGGAGCATACGACCAGCATCACCAATACATCACTCGAGCCGAAACAGATATAACGGAGAAGCTACGACTAGTTTAGATAGAGATTTTCAGAAAAGGAAAAAAGAGCAAGCGTTAGAGTTGAAAATTCAAGAGGCGTTCCTTCGGTTCATGGCGTGCACGCTACAAGGGTACCGCAGCTACCTCATACCGATAACGAAGGCTCCCACAGTGGGCACCACCGACCCCGACGCCCTGTTCCAAATGAACGAGTTCCTGCGATCCAGGGAAAAGACCCAACAACGCTTCTTCACTTTAATGATGCGAACGCAAATGTTCACGCGCTTCATCGAGGAGAGCTCGTTCGTGTACGACGCGGACCAGGGGCTCACGTTCTTCGACGAGTGCATCGAGAAGATAGCGAGCGGCGAGGAGCGCCTGCTCGGGATGGACACCACCAATGCCTCCGAGAGGACTGTGTTTCTGCTGCCGCCAGATCCTCCAGACCCGCAGAAAACCTACACTTACGAGAAGTTCAGTCTGGACTTGAACTTGATCAGCGCGTGCAGCGGGCTGGGGCGCGGGCTGGGCGGCGCGCTGCAGCTGCCGGCCGCCGCGCTGGCGTCCGCCGAGTCGCTGGCCGACGCCTCGCCCATGGCCAAGCGCACCAAGCACGAGGTCGCCGCCGCACAGAGACTGGCTCGTAAAGCGAGTCGGTCGCCGGAGGCGTGGGCCAAATGTTTGCTGGGCGCGTGCTACTCGCTATATTTTCTGACGCTTCCCTCTCGGCTCATGCTGAACAGAGGAAAAGAACACGCTACTTTGAGAACAGCATATGAACTCTTGGAACGAGCCGCTAAACTCAAGGTGCCCTGTGATGAGGTGTGTTACCGAGTAATGATGCAGCTGTGCGGAATCCATTCGTTTCCTGTAATGGCTGTGCAGCTACTGTTTCTGATGAAGAGAGCCGGCCTACAGCCCAACGCGCTGACGTACGGATGCTACAACCGATGGGTGCTCGAAGCTAATTGGCCTAAAGATATGCCCAGCGACTCGAAGTTGCTATGGAACAAGCTTCGGTTGGCGGTGGTCGGTGCTGCCGTATTCCGCAGAGCTGGAGCTCAACGCGCCGGCAGGAACGGAAGCGGTTCGCTGCTCATGCCTACTTCAGGTAGCAGCACGTTGCCGCGCGTGCGCTCCGCGGCGGCGGTGGGGGAGGGGGCGGAGCTGGCGGCGCTGGCCGGGTTCGCCTCGGAGCCGGCACACAGCAGAACCAGCCTCGACTCAGTGTGCGGGCGCGAGAACGAGGCTCGGTGCAGCGCGTTCGAGGCGCTGTGTCGGCGCGGGAACATCGTGCGGGCCGGCGCCGCCGCGCGCCCGCCCGCGCACGCACTCTGCGCCGCCGCCGGGATACTCATCTCCGGTGTACCGTCGAACCCCGACTTAAGTTCATCGACAAGGCCGAGAAGTAATTCACTAGGGAACGATGAGCCAGATTCGCCTATTACTGTGTCGGATAAAAGACAGACTATCCACGTCAGCCCTGACAGTCCATCGGATCTTCGCATTCTAACGAGATCAGAAAGTTTCGCGGGAGACGCTCAAATAGTGCAGAACTTGCAGAGGCTTTCGTTTACGGGTATTTCGAACGCGAAAACGAAGTGTTCGAGGGCGTTGAGCTTCCCTGAGGAATCTGACAAGGACGTGGATGTTGAGACGTTGAAAACATCGAAGGCTTCTCCGCTCAGAGTATCGCCAAGAACACCAGTACTAAGTGACGACCCCCTGGGTGCCCTGAGCGTCCCCCCTGTCCCGGACGAGGCGGCGCCCCCGCGCACCCCCTCCCCCGCGGACCCTCCTCTGCCGAAGCACGAGCTTAGCGTCAGCCCTAAGCTCTTCCATCGCCGCAGCAACTCCTTCCAGGATGATCCGCCCGAACAGTTAGGGAGCGAGACGGTGCCCGCCGGGACGGTCTCCTCGAGCCTCGTTAGCCTTGGGAACACTCTGAAGCTCAATTTCGGACGCTATTCGCCTGCACGGCTGTCGTTGCGAAAGGAAAACATGAAAATCGGAAAGGCTATGATCGAGAACTACTTCAGTCCGACAAGCATGGCCGGTAAGAAGTCCAACGAGCTTCTTCAGAGCGGCCTCAGCAGTCTGAAGTCGGCCGCCACGAGCATGGCGAAGAAGTTTGACGAGATGAAGGAGGTCATATCCGCGAACTCGACGCCCGTCAAGGGAGCCATCGGCACCGCCACCAGCGCGCTCGGAGCCTTCCGGGCGGACGACGACGGGGTCGACGCCTCCTCGGAAATTAACTCTGATGAACTTATTGGAGGTACCGGCTTCAGACGTGCATCTAGTGAGGCGGAGCTCGCCTGCTCCATGGAGCGCGGATCTTTAGCTACGCTAATATCTCATCTACCCGACAATCTGTATCCACAGACCTCTGCGCCCGTGAAGCCGGAGAGCGTCGGCGTGTCGGTGCACATGTCGTCGTGCTCGCAGTGCCACCAGTGCCTGGCGCTGCTGTACGACGAGGACATCATGGCGGGCTGGGCGGCGGACGACTCCAACCTCAACACGCGCTGCACGGCGTGCGGCCGACACACCGTCCCGCTACTCACTGTCAAGATAATGCGTACAGGACAAACGCAAACTGAAACTCTGACTGTGCCTTATTTAAATCCTCTGGTCCTCAGGAAAGAATTTGAATCTGTATTAGGTAGAGAAGGCGATTCCTGTCTGATCGAATCCGAATTTGTCGAATCCCATCCGATAGTGTATTGGAATTTAGTATGGTTCCTGGAACGAGCGAACATCGAAAGTCATCTGCCCGATTTACTGTGTCCGAATTTCCAAGCGAAATATCAAAGTTCGGACAACCTGTCTGAGGCCGACAAGTCCGAGCGCGTGGTGGAGTGCGGCTGGGAGCGCGGCGGCGAGGCGGAGGGGGGCGCGGGGGCGGGCGCGCTGCACCGCGCGTGGCGCCGCCGCCGCACGCACCGCGCACACTCGCGCGCGGTGCAGGCCCTGCTCCTCACGCAGCACGACGCCGCCGCACACGCAGTGGCGCTGGCCGTACTGAACGGGTTATTGAGCAACAACCTGGCGGACGCGTTGAGGAAGCTGGCCGAGTGGCGGGAGAACACGAACGAGAATAAACGATACTACTCCTTCTACAGAGACATCCTCTTCTTGGCTATGGCTGCGCTTGGAGAGCAGAACATCGACTTCATCGCCCTGCAGCGCGAGTACACGCGGGCCCTCGACCAGCTCGGCCGGGAGGCGAGGCCCCAGGACCTGCCGCCCTCGCCCACGGCGCTCTGCTGCAGGCACTACTTCAAACGGCTGCGGCTGTTACTCGACGAGTGA
Protein
MSWSKQPLNIPVERYITHLLEEVPFPEPTILLQLSPSNPSDRVIVTRRDDQPLVRSGASFRQLLLNLGPDNCLLLLALAITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKALKQTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKRKKEQALELKIQEAFLRFMACTLQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSREKTQQRFFTLMMRTQMFTRFIEESSFVYDADQGLTFFDECIEKIASGEERLLGMDTTNASERTVFLLPPDPPDPQKTYTYEKFSLDLNLISACSGLGRGLGGALQLPAAALASAESLADASPMAKRTKHEVAAAQRLARKASRSPEAWAKCLLGACYSLYFLTLPSRLMLNRGKEHATLRTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYGCYNRWVLEANWPKDMPSDSKLLWNKLRLAVVGAAVFRRAGAQRAGRNGSGSLLMPTSGSSTLPRVRSAAAVGEGAELAALAGFASEPAHSRTSLDSVCGRENEARCSAFEALCRRGNIVRAGAAARPPAHALCAAAGILISGVPSNPDLSSSTRPRSNSLGNDEPDSPITVSDKRQTIHVSPDSPSDLRILTRSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVDVETLKTSKASPLRVSPRTPVLSDDPLGALSVPPVPDEAAPPRTPSPADPPLPKHELSVSPKLFHRRSNSFQDDPPEQLGSETVPAGTVSSSLVSLGNTLKLNFGRYSPARLSLRKENMKIGKAMIENYFSPTSMAGKKSNELLQSGLSSLKSAATSMAKKFDEMKEVISANSTPVKGAIGTATSALGAFRADDDGVDASSEINSDELIGGTGFRRASSEAELACSMERGSLATLISHLPDNLYPQTSAPVKPESVGVSVHMSSCSQCHQCLALLYDEDIMAGWAADDSNLNTRCTACGRHTVPLLTVKIMRTGQTQTETLTVPYLNPLVLRKEFESVLGREGDSCLIESEFVESHPIVYWNLVWFLERANIESHLPDLLCPNFQAKYQSSDNLSEADKSERVVECGWERGGEAEGGAGAGALHRAWRRRRTHRAHSRAVQALLLTQHDAAAHAVALAVLNGLLSNNLADALRKLAEWRENTNENKRYYSFYRDILFLAMAALGEQNIDFIALQREYTRALDQLGREARPQDLPPSPTALCCRHYFKRLRLLLDE

Summary

Uniprot
H9IW79   A0A2A4JDM7   A0A437B7L1   A0A2A4JE38   A0A212FGU0   A0A194PYJ9   + More
A0A2H1W0P8   A0A336LGT6   A0A336K1N9   W5JEJ2   A0A2M4CSA7   A0A2M4CS61   A0A2M4CS33   A0A0P6IVU8   A0A336N2D0   A0A336LKP3   A0A1A9W6B8   A0A182FSM4  
Pubmed
19121390    22118469    26354079    20920257    23761445    26999592    + More
EMBL
BABH01006012    BABH01006013    BABH01006014    BABH01006015    NWSH01001922    PCG69664.1    + More
RSAL01000128    RVE46501.1    PCG69663.1    AGBW02008606    OWR52923.1    KQ459585    KPI98412.1    ODYU01005340    SOQ46084.1    UFQS01003618    UFQT01003618    SSX15805.1    SSX35152.1    UFQS01000043    UFQT01000043    SSW98377.1    SSX18763.1    ADMH02001468    ETN62471.1    GGFL01003977    MBW68155.1    GGFL01003979    MBW68157.1    GGFL01003978    MBW68156.1    GDUN01000118    JAN95801.1    SSX15806.1    SSX35153.1    SSW98378.1    SSX18764.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000000673    + More
UP000091820    UP000069272   
PRIDE
H9IW79   
Pfam
PF03455   dDENN        + More
PF02141   DENN
PF03456   uDENN
Interpro
IPR005113   uDENN_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR023341   MABP       
IPR037516   Tripartite_DENN       
IPR001194   cDENN_dom       
IPR005112   dDENN_dom       
IPR002885   Pentatricopeptide_repeat       
Gene 3D
1.25.40.10    
ProteinModelPortal
H9IW79   A0A2A4JDM7   A0A437B7L1   A0A2A4JE38   A0A212FGU0   A0A194PYJ9   + More
A0A2H1W0P8   A0A336LGT6   A0A336K1N9   W5JEJ2   A0A2M4CSA7   A0A2M4CS61   A0A2M4CS33   A0A0P6IVU8   A0A336N2D0   A0A336LKP3   A0A1A9W6B8   A0A182FSM4  
PDB
3TW8     E-value=1.07905e-11,     Score=174

Ontologies

KEGG
101738898    K20163 DENN domain-containing protein 4 | (RefSeq) C-myc promoter-binding protein
GO
GO:0016021   GO:0005515  

Topology

Length:
1308
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.719460000000001
Exp number, first 60 AAs:
0.00156
Total prob of N-in:
0.00828
outside
1  -  1308
 
 

Population Genetic Test Statistics

Pi
214.885582
Theta
175.430522
Tajima's D
1.222946
CLR
0.236676
CSRT
0.720213989300535
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号