Gene

KWMTBOMO12497  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001501

Annotation

ribosomal_protein_S6_[Bombyx_mori]

Location

Bomo_Chr21(+):5027635-5031580      View in EpiBrowser

Full name

40S ribosomal protein S6      

Location in the cell

Nuclear   Reliability : 3.603

CDS

ATGAAGTTAAACGTTTCGTACCCGGCAACGGGATGCCAGAAGTTGTTCGAAGTGGTGGACGAGCACAAGCTTCGTATCTTTTACGAAAAGCGCATGGGCGCCGAAGTAGAGGCTGATCAGTTAGGCGATGAATGGAAGGGCTATGTACTTCGTGTCGCTGGCGGCAACGACAAGCAAGGATTCCCGATGAAACAGGGCGTCCTGACAAACAGCCGTGTTCGTCTTCTGATGTCAAAGGGCCACTCATGTTACAGACCGCGCCGCGATGGAGAGAGAAAACGTAAATCAGTTCGTGGATGTATTGTTGACGCCAATCTCTCGGTCTTGGCTCTTGTTATTGTGCGCAAGGGTGCCCAGGAAATTCCTGGATTGACTGATGGAAATGTACCCCGCCGTCTAGGTCCCAAACGTGCTTCCAAAATCCGTAAGCTGTTCAACCTTAGCAAAGAAGATGATGTACGTCGTTATGTCGTCAAACGCGTGCTCCCAGCCAAGGAAGGAAAAGAAAATGCTAAACCCAGACATAAGGCACCTAAGATCCAGAGGCTAGTCACCCCTGTAGTTCTGCAGCGTAGACGTCATCGTCTCGCTCTGAAGAAGAAGCGTCTCGCTAAGCGCAAGTCCTCTGAGGCTGAATATGCTAAATTGCTTGCACAGAGAAAGAAGGAATCCAAGGTGCGTCGCCAGGAAGAGATCAAACGCAGGCGGTCAGCTTCAATGCGTGATTCCAAGAGCTCTAGCCAGAGTGCTCCGCAAAAGTGA

Protein

MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSSSQSAPQK

Description

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Similarity

Belongs to the eukaryotic ribosomal protein eS6 family.

Keywords

Phosphoprotein   Ribonucleoprotein   Ribosomal protein   3D-structure   Alternative splicing   Complete proteome   Reference proteome  

Feature

chain  40S ribosomal protein S6
splice variant  In isoform B.

Uniprot

Q5UAN8   H9IW70   A0A1E1W397   A0A3G1T1D9   A0A212F888   G0ZEE5   + More
A0A437BQJ6   A0A2A4K4P6   A0A2H1W0D4   E7DZ27   Q95V32   I4DIE1   Q94624   A0A0N1INQ9   I4DLY1   A0A0L7LSY4   A7KCW2   A0A0P4VSS7   R4G4G8   A0A023FD99   E2J7D8   A0A224XIM8   A0A069DXX2   A0A067QVC4   A0A161MKY2   A0A1W4WF17   R4WD04   A0A2A4AU84   A0A2P8Z8Q6   A0A0A9X6G5   A0A1B6CYF3   A0A1B6HKN0   A0A0J7KWB7   A0A1B1NJ17   K7J8U8   E9ID80   F4WRX0   A0A195BZS0   V5IAV2   D1M807   A0A195FKJ2   E2BQ35   A0A348G677   A0A1D1YB48   A0A0K8TQE5   E0VJF5   A0A1Y1NMY6   A0A194PYI9   A2I3U5   A0A088AFT2   A0A0M4N2D5   A0A0C9RGY7   A0A195BWQ9   D6W7G7   A0A2A3EGL6   A0A1B0GPS5   R4UW72   A0A1Y1L5T8   B4Q0Q9   B3NTU5   A0A0K8UWX4   A0A034VPT4   A0A0C9QYX5   A0A0M8ZMR1   W8C5T4   B4MAT3   H1ZYF1   P29327   B4R680   A0A0L0BU24   A0A0A1XRK7   D2NUH9   T1P938   A0A154NY94   B4NCV4   A0A1W4VJY3   Q29I22   B3MQZ9   A0A1A9WFV9   B4L818   A0A3B0K604   A0A3B0EXR2   A0A1D2M5S6   V9IGB0   A0A1J0M9D2   A0A0P7VTS0   J3JWK7   D3TLR2   A0A1A9VWV8   A0A1B0A128   Q2PQM1   A7YYE3   A0A2R5LJM9   A0A1L8EHL3   N6UJK1   R7UHH1   A0A3B3RF32   Q6DHL6   A0A401SV27   A0A131Z3E9  

Pubmed

19121390    22118469    14668217    22651552    9020166    26354079    + More
26227816    17603110    27129103    25474469    26334808    24845553    23691247    29403074    25401762    26823975    20075255    21282665    21719571    20798317    26369729    20566863    28004739    18362917    19820115    17994087    17550304    25348373    24495485    1454811    8448211    8412647    10731132    12537572    18327897    23636399    26108605    25830018    25315136    15632085    27289101    27825774    22516182    23537049    20353571    16907828    23254933    29240929    12477932    23594743    30297745    26830274   

EMBL

AY769320    AAV34862.1    BABH01005936    GDQN01009597    JAT81457.1    MG992362    + More
AXY94800.1    AGBW02009774    OWR49950.1    JF265023    AEL28854.1    RSAL01000020    RVE52599.1    NWSH01000166    PCG78884.1    ODYU01005528    SOQ46463.1    HQ424730    ADT80674.1    AF429980    AK401059    BAM17681.1    U64795    KQ461068    KPJ09877.1    AK402299    BAM18921.1    JTDY01000198    KOB78336.1    EF207950    ABS57430.1    GDKW01001570    JAI55025.1    GAHY01001375    JAA76135.1    GBBI01000008    JAC18704.1    HP429356    ADN29856.1    GFTR01004080    JAW12346.1    GBGD01002675    JAC86214.1    KK852898    KDR14141.1    GEMB01000115    JAS02996.1    AK417084    BAN20299.1    NWMT01000155    PCC98973.1    PYGN01000144    PSN52885.1    GBHO01028368    GBRD01002041    GDHC01018428    JAG15236.1    JAG63780.1    JAQ00201.1    GEDC01018786    JAS18512.1    GECU01032561    JAS75145.1    LBMM01002441    KMQ94827.1    KT274803    ANS83638.1    AAZX01000793    AAZX01012171    AAZX01025209    GL762454    EFZ21522.1    GL888292    EGI63127.1    KQ978501    KYM93426.1    GALX01000540    JAB67926.1    GU120431    ACY71281.1    KQ981490    KYN41185.1    GL449694    EFN82223.1    FX985619    BBF97950.1    GDJX01016069    JAT51867.1    GDAI01001222    JAI16381.1    DS235222    EEB13511.1    GEZM01000970    JAV98235.1    KQ459585    KPI98402.1    EF070448    ABM55514.1    KR075852    ALE20571.1    GBYB01012447    JAG82214.1    KQ976401    KYM92396.1    KQ971307    EFA11293.1    KZ288254    PBC30848.1    AJVK01060067    KC740672    AGM32496.1    GEZM01063644    JAV69043.1    CM000162    EDX02330.2    CH954180    EDV47508.2    GDHF01021147    JAI31167.1    GAKP01014468    JAC44484.1    GBYB01000925    JAG70692.1    KQ438480    KOX67237.1    GAMC01001532    JAC05024.1    CH940655    EDW66342.1    FR870177    FR870178    FR870179    FR870180    FR870181    FR870182    FR870183    FR870184    FR870185    FR870186    FR870187    FR870188    CCB63135.1    CCB63136.1    CCB63137.1    CCB63138.1    CCB63139.1    CCB63140.1    CCB63141.1    CCB63142.1    CCB63143.1    CCB63144.1    CCB63145.1    CCB63146.1    L01658    L07881    L02074    L02075    AE014298    CM000366    EDX17357.1    JRES01001335    KNC23580.1    GBXI01000646    JAD13646.1    BT120122    ADB29131.1    KA645222    AFP59851.1    KQ434775    KZC04054.1    CH964239    EDW82663.1    CH379064    EAL31584.1    CH902622    EDV34204.1    CH933814    EDW05593.1    OUUW01000025    SPP89657.1    RBVL01000081    RKO12320.1    LJIJ01003760    ODM88323.1    JR041156    AEY59374.1    KY027064    APD16995.1    JARO02000746    KPP77533.1    APGK01052662    BT127625    KB741213    KB631653    AEE62587.1    ENN72647.1    ERL85039.1    EZ422364    ADD18640.1    DQ307202    BC152627    AAI52628.1    GGLE01005626    MBY09752.1    GFDG01000716    JAV18083.1    APGK01021662    KB740350    KB632240    ENN80846.1    ERL90530.1    AMQN01007616    KB301027    ELU05989.1    CU929294    BC075953    BC154192    AAH75953.1    AAI54193.1    BEZZ01000582    GCC34257.1    GEDV01002633    JAP85924.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000053240    UP000037510    + More
UP000027135    UP000192223    UP000243750    UP000245037    UP000036403    UP000002358    UP000007755    UP000078542    UP000078541    UP000008237    UP000009046    UP000053268    UP000005203    UP000078540    UP000007266    UP000242457    UP000092462    UP000002282    UP000008711    UP000053105    UP000008792    UP000000803    UP000000304    UP000037069    UP000095301    UP000076502    UP000007798    UP000192221    UP000001819    UP000007801    UP000091820    UP000009192    UP000268350    UP000276569    UP000094527    UP000034805    UP000192224    UP000019118    UP000030742    UP000078200    UP000092445    UP000092444    UP000014760    UP000261540    UP000000437    UP000287033   

PRIDE

Q5UAN8    H9IW70    Q95V32    Q94624    A0A088AFT2    H1ZYF1    + More
P29327    A7YYE3   

Pfam

PF01092   Ribosomal_S6e

Interpro

IPR001377   Ribosomal_S6e        + More
IPR014401   Ribosomal_S6_euk       
IPR018282   Ribosomal_S6e_CS       
IPR020924   Ribosomal_S6e_arc       

ProteinModelPortal

Q5UAN8   H9IW70   A0A1E1W397   A0A3G1T1D9   A0A212F888   G0ZEE5   + More
A0A437BQJ6   A0A2A4K4P6   A0A2H1W0D4   E7DZ27   Q95V32   I4DIE1   Q94624   A0A0N1INQ9   I4DLY1   A0A0L7LSY4   A7KCW2   A0A0P4VSS7   R4G4G8   A0A023FD99   E2J7D8   A0A224XIM8   A0A069DXX2   A0A067QVC4   A0A161MKY2   A0A1W4WF17   R4WD04   A0A2A4AU84   A0A2P8Z8Q6   A0A0A9X6G5   A0A1B6CYF3   A0A1B6HKN0   A0A0J7KWB7   A0A1B1NJ17   K7J8U8   E9ID80   F4WRX0   A0A195BZS0   V5IAV2   D1M807   A0A195FKJ2   E2BQ35   A0A348G677   A0A1D1YB48   A0A0K8TQE5   E0VJF5   A0A1Y1NMY6   A0A194PYI9   A2I3U5   A0A088AFT2   A0A0M4N2D5   A0A0C9RGY7   A0A195BWQ9   D6W7G7   A0A2A3EGL6   A0A1B0GPS5   R4UW72   A0A1Y1L5T8   B4Q0Q9   B3NTU5   A0A0K8UWX4   A0A034VPT4   A0A0C9QYX5   A0A0M8ZMR1   W8C5T4   B4MAT3   H1ZYF1   P29327   B4R680   A0A0L0BU24   A0A0A1XRK7   D2NUH9   T1P938   A0A154NY94   B4NCV4   A0A1W4VJY3   Q29I22   B3MQZ9   A0A1A9WFV9   B4L818   A0A3B0K604   A0A3B0EXR2   A0A1D2M5S6   V9IGB0   A0A1J0M9D2   A0A0P7VTS0   J3JWK7   D3TLR2   A0A1A9VWV8   A0A1B0A128   Q2PQM1   A7YYE3   A0A2R5LJM9   A0A1L8EHL3   N6UJK1   R7UHH1   A0A3B3RF32   Q6DHL6   A0A401SV27   A0A131Z3E9  

PDB

4V6W     E-value=1.15691e-79,     Score=753

KEGG

732855    K02991 small subunit ribosomal protein S6e | (RefSeq) RpS6; ribosomal protein S6

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)
04150    mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0016021   GO:0022627   GO:0002181   GO:0022626   GO:0006955   GO:0005622   GO:0008270   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR11502  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29332

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07313

outside

1  -  253

 

 

Pi

250.554449

Theta

196.951968

Tajima's D

0.810351

CLR

0.003622

CSRT

0.607369631518424

Interpretation

Uncertain