Gene

KWMTBOMO12483  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001471

Annotation

ribosomal_protein_S15_[Bombyx_mori]

Location

Bomo_Chr21(-):4792546-4796242      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.943 Nuclear   Reliability : 2.087

CDS

ATGGCTGAGGTCGACGAAACCCTCAAGAAAAAGCGTATTTTCAGGAAGTTCACTTACCGGGGAGTTGATCTCGATCAGCTCCTTGATATGCCCAATGAGCAACTCATGGAATTAATGCATGCCCGTGCGCGCCGGCGGTTCGCTCGTGGTCTTAAACGTAAACCAATGGCATTGGTCAAGAAGCTGCGTCGCGCCAAGAAAGAGGCTCCTCCGAATGAGAAGCCAGAGATCGTGAAGACTCACTTGAGAAACATGATCATCGTTCCCGAGATGGTCGGTTCAATTGTCGGCATTTACAACGGAAAAACTTTTAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTCGGAGAGTTCTCAGTCACGTACAAGCCTGTAAAGCACGGTAGACCCGGTATCGGTGCTACACACAGCTCAAGGTTCATTCCGCTCAAGTAG

Protein

MAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHARARRRFARGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK

Similarity

Belongs to the universal ribosomal protein uS19 family.

Uniprot

Q66SV9   Q58VY6   A0A2A4J0J0   I4DLY8   Q6EV25   E7DZ20   + More
A0A3G1T1M9   A0A212ESB4   I4DIG2   Q962R4   A0A0C9R4G4   D1LYP4   Q56FH4   Q5MGK9   Q56FC5   A0A232EYY6   K7IVG7   A0A0N1INR1   A0A1B6M1K2   E2BUB5   R4FMS8   A0A195BK86   A0A158N9Z8   A0A3L8D921   E2APF5   A0A2P8XM27   A7KCW3   A0A0L7LC10   G0ZED9   Q4GXQ7   A0A067RGR2   A0A3S2M6L5   A0A1B6FNM0   A0A1Y1LSQ9   Q0PXY4   A0A0K8TPJ9   A0A2A3EUQ0   V9IKT0   A0A0M9A2E0   A0A087ZUL8   A0A1W4WQ89   A0A151WH95   Q4GXQ6   A0A195FQY6   A0A195CUT8   Q4GXQ8   A0A146L101   A0A1L8EGR6   A0A1L8EAB1   A0A1B6CJU9   A0A0L0BLJ4   A0A0N9MVM9   A0A1I8P530   A0A1D1YRK6   T1PF28   A0A310SDY7   A0A1L8EGL7   A0A240SWX1   A0A1A9YGK7   A0A1A9VSP5   A0A1B0B3H8   A0A1B0AB15   A6YPN5   R4G527   A0A161TJK6   Q4GXR7   A0A0J7KZD6   A0A1A9WR93   A0A0A9W1W4   A0A146KM95   A0A1J1IWJ3   U5EWD2   A2I418   U5ETQ9   A0A2J7PBX8   A0A1B0GL10   B5M6D9   Q16PF7   Q5MIR4   A9QQ37   A0A1Q3FAF8   Q5QC93   A0A0L0HJM2   A0A2L2Y366   A0A2D1QW11   B0W2E6   Q6B8B6   A0A0K8RNR6   Q4PM26   W8CAP8   A0A0A0QXJ9   Q6F476   A0A2R7WZI0   R4WI81   A0A1Y1ZCX7   A0A1Y1X934   A0A023FEC1   A0A023FUI6   A0A433C0Y6   A0A1Y1YSH0  

Pubmed

19121390    22651552    22118469    26354079    14668217    16023793    + More
28648823    20075255    20798317    21347285    30249741    29403074    17603110    26227816    24845553    28004739    26369729    26823975    26108605    18207082    25401762    17510324    17244540    24945155    26561354    16102420    16431279    24495485    23691247    30485448   

EMBL

BABH01005915    AY706957    AY769330    AAU11820.1    AAV34872.1    AY818611    + More
AAX22762.1    NWSH01004585    PCG64893.1    AK402306    BAM18928.1    AJ783762    CAH04125.1    HQ424723    ADT80667.1    MG992452    AXY94890.1    AGBW02012835    OWR44378.1    AK401080    KQ459564    BAM17702.1    KPI99650.1    AF400212    ODYU01011564    AAK92184.1    SOQ57381.1    GBYB01011189    JAG80956.1    GU084318    ACY95351.1    AY961526    AAX62428.1    AY829777    AAV91391.1    AY961575    AAX62477.1    NNAY01001524    OXU23696.1    KQ461068    KPJ09891.1    GEBQ01010161    JAT29816.1    GL450630    EFN80699.1    GAHY01000853    JAA76657.1    KQ976455    KYM85063.1    ADTU01009931    QOIP01000011    RLU17020.1    GL441524    EFN64700.1    PYGN01001740    PSN33060.1    EF207951    ABS57431.1    JTDY01001742    KOB73023.1    JF265017    AEL28848.1    AM048966    CAJ17201.1    KK852693    KDR18318.1    RSAL01000020    RVE52611.1    GECZ01017963    JAS51806.1    GEZM01053500    JAV74037.1    DQ673402    ABG81975.1    GDAI01001281    JAI16322.1    KZ288185    PBC34869.1    JR052628    AEY61743.1    KQ435758    KOX75797.1    KQ983135    KYQ47175.1    AM048967    CAJ17202.1    KQ981305    KYN42883.1    KQ977276    KYN04420.1    AM048965    CAJ17200.1    GDHC01016368    JAQ02261.1    GFDG01000941    JAV17858.1    GFDG01003243    JAV15556.1    GEDC01023534    JAS13764.1    JRES01001695    KNC20916.1    KR080496    ALG76024.1    GDJX01010694    JAT57242.1    KA647402    AFP62031.1    KQ768090    OAD53196.1    GFDG01000942    JAV17857.1    CCAG010001148    JXJN01007861    EF639046    ABR27931.1    ACPB03005036    GAHY01000855    JAA76655.1    GEMB01000099    JAS03012.1    AM048956    CAJ17192.1    LBMM01001666    KMQ95922.1    GBHO01044749    JAF98854.1    GDHC01020945    JAP97683.1    CVRI01000063    CRL04472.1    GANO01003002    JAB56869.1    EF070521    ABM55587.1    GANO01002676    JAB57195.1    NEVH01027073    PNF13843.1    AJWK01034039    EU979490    ACH48193.1    CH477784    EAT36243.1    AY826146    GAPW01005577    AAV90718.1    JAC08021.1    EU247122    ABX75384.1    GFDL01010505    JAV24540.1    AY741683    AAV69400.1    KQ257455    KND01034.1    IAAA01000528    LAA02568.1    KY027062    ATP16748.1    DS231826    EDS28692.1    AY674231    AAT92164.1    GADI01001569    JAA72239.1    ABJB010107026    ABJB010659492    DQ066302    DS636921    AAY66939.1    EEC01601.1    GAMC01001124    JAC05432.1    KM267668    AIU94794.1    AB180414    BAD26658.1    KK855988    PTY24550.1    AK417070    BAN20285.1    MCFE01000003    ORY08111.1    MCFE01000677    ORX82239.1    GBBK01004151    JAC20331.1    GBBL01002221    JAC25099.1    RBNI01013407    RUP32252.1    MCFE01000082    ORY00525.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000215335    UP000002358    + More
UP000053240    UP000008237    UP000078540    UP000005205    UP000279307    UP000000311    UP000245037    UP000037510    UP000027135    UP000283053    UP000242457    UP000053105    UP000005203    UP000192223    UP000075809    UP000078541    UP000078542    UP000037069    UP000095300    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000015103    UP000036403    UP000091820    UP000183832    UP000235965    UP000092461    UP000008820    UP000053201    UP000002320    UP000001555    UP000193498   

PRIDE

Q66SV9    A0A087ZUL8    Q4PM26   

Pfam

PF00203   Ribosomal_S19        + More
PF03942   DTW

Interpro

IPR002222   Ribosomal_S19        + More
IPR023575   Ribosomal_S19_SF       
IPR005713   Ribosomal_S19A/S15e       
IPR020934   Ribosomal_S19_CS       
IPR005636   DTW       

SUPFAM

SSF54570   SSF54570       

Gene 3D

3.30.860.20    

ProteinModelPortal

Q66SV9   Q58VY6   A0A2A4J0J0   I4DLY8   Q6EV25   E7DZ20   + More
A0A3G1T1M9   A0A212ESB4   I4DIG2   Q962R4   A0A0C9R4G4   D1LYP4   Q56FH4   Q5MGK9   Q56FC5   A0A232EYY6   K7IVG7   A0A0N1INR1   A0A1B6M1K2   E2BUB5   R4FMS8   A0A195BK86   A0A158N9Z8   A0A3L8D921   E2APF5   A0A2P8XM27   A7KCW3   A0A0L7LC10   G0ZED9   Q4GXQ7   A0A067RGR2   A0A3S2M6L5   A0A1B6FNM0   A0A1Y1LSQ9   Q0PXY4   A0A0K8TPJ9   A0A2A3EUQ0   V9IKT0   A0A0M9A2E0   A0A087ZUL8   A0A1W4WQ89   A0A151WH95   Q4GXQ6   A0A195FQY6   A0A195CUT8   Q4GXQ8   A0A146L101   A0A1L8EGR6   A0A1L8EAB1   A0A1B6CJU9   A0A0L0BLJ4   A0A0N9MVM9   A0A1I8P530   A0A1D1YRK6   T1PF28   A0A310SDY7   A0A1L8EGL7   A0A240SWX1   A0A1A9YGK7   A0A1A9VSP5   A0A1B0B3H8   A0A1B0AB15   A6YPN5   R4G527   A0A161TJK6   Q4GXR7   A0A0J7KZD6   A0A1A9WR93   A0A0A9W1W4   A0A146KM95   A0A1J1IWJ3   U5EWD2   A2I418   U5ETQ9   A0A2J7PBX8   A0A1B0GL10   B5M6D9   Q16PF7   Q5MIR4   A9QQ37   A0A1Q3FAF8   Q5QC93   A0A0L0HJM2   A0A2L2Y366   A0A2D1QW11   B0W2E6   Q6B8B6   A0A0K8RNR6   Q4PM26   W8CAP8   A0A0A0QXJ9   Q6F476   A0A2R7WZI0   R4WI81   A0A1Y1ZCX7   A0A1Y1X934   A0A023FEC1   A0A023FUI6   A0A433C0Y6   A0A1Y1YSH0  

PDB

4V6W     E-value=1.70612e-56,     Score=549

KEGG

692690    K02958 small subunit ribosomal protein S15e | (RefSeq) RpS15, S15; ribosomal protein S15

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0015935   GO:0003735   GO:0006412   GO:0005840   GO:0000028   GO:0022627   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR11880  

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11853

Exp number, first 60 AAs:

0

Total prob of N-in:

0.25864

outside

1  -  147

 

 

Pi

21.649387

Theta

59.384945

Tajima's D

-1.657902

CLR

210.72563

CSRT

0.0407979601019949

Interpretation

Possibly Positive selection