Gene

KWMTBOMO12482

Annotation

reverse_transcriptase_[Papilio_xuthus]

Location

Bomo_Chr21(+):4768153-4770869      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.206 Peroxisomal   Reliability : 1.367 PlasmaMembrane   Reliability : 1.017

CDS

ATGGCCGCCCCACCGGCTATGACTAAGATCGCGGTCGCAACAATCCAGTCTATTAAAATTCACGTTTTAGCCGACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGGTCAGGGTGGGACCCGATCTGTCGGCGGAGCAATATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGATGAGGCCGTTTCCGGGGGTGAGGTGGCTTTGGCGGTGTCACTCGATATCGCCAATGCGTTCAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAAGACAGATCGGTCACGTGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTGAGCGTAATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTAGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTCCTTCCCAATGTTGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCTTCGTGTACGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTACTGGAGTCATGGTCTAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTTCTTGTGAACTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGTTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGTGACTTGGACACGGCGGAGCACACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGTGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAGGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATATCGCCCAAGCCCTGGCCCTCTAA

Protein

MAAPPAMTKIAVATIQSIKIHVLADRPIVLLDEVGKLLERILAARIIQHLVRVGPDLSAEQYGFREGRSTVDAILRVRALSDEAVSGGEVALAVSLDIANAFNTLPWSVIGGALERHGVPPYLRRLVGSYLEDRSVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRVRGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVFTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADIAQALAL

Uniprot

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A3S2N998   A0A0J7KM11   A0A0J7KIY5   A0A0J7KLT9   A0A0J7KJG6   A0A0J7KJH4   A0A0J7KL06   A0A0J7KQK3   A0A0J7JZ13   A0A0J7KYD2   A0A0J7JZF7   A0A0J7N7S8   A0A0J7KLH8   A0A0J7KIM6   A0A0J7NMN5   A0A0J7KPR0   A0A0J7KF37   A0A0J7KIW1   A0A0J7K3R6   A0A0J7KF40   A0A0J7NAV8   A0A3S2LNH8   A0A0J7KWU5   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7MY17   A0A0J7N0R3   A0A0J7KW81   A0A0J7KFH2   A0A2S2N8I2   A0A0J7KMG5   A0A0J7NFZ0   A0A2S2PBP5   A0A0J7K3R2   A0A0J7KSR8   J9LJ80   A0A0J7KMU1   X1WJY4   A0A2S2PEZ7   A0A0J7KQY4   A0A0J7NJI3   A0A0J7MYL9   J9KJG8   A0A2S2NJ82   A0A2H8TIE5   A0A0J7JXX4   J9LVU7   J9JWJ3   A0A2H8TR36   J9KNG8   A0A2S2PEU2   A0A0A1WPA4   J9KPP8   X1WXT5   A0A2S2NQQ6   A0A0J7KLK2   A0A0J7K7P2   A0A034WR48   A0A142LX45   J9KV04   A0A2S2P488   A0A2M4BBV9   A0A2M4BDI3   A0A2M4BC28   T1DCM0   A0A0J7MWN5   N6TYN9   X1WSG8   A0A2M4BC01   D6WC19   A0A023EW96   T1DG89   A0A1W7R6I9   A0A2S2NYY3   T1DG59   J9KUM6   A0A2M4ADW9   A0A139W9J0   X1WZ64  

Pubmed

12644555    28756777    9092665    25830018    25348373    25527032    + More
24330624    23537049    18362917    19820115    24945155   

EMBL

AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01005707    KMQ91279.1    LBMM01006954    KMQ90166.1    LBMM01005733    KMQ91252.1    LBMM01006671    KMQ90407.1    LBMM01006657    KMQ90417.1    LBMM01006063    KMQ90967.1    LBMM01004272    KMQ92618.1    LBMM01019839    KMQ83438.1    LBMM01002052    KMQ95336.1    LBMM01019838    KMQ83439.1    LBMM01008682    KMQ88705.1    LBMM01005948    KMQ91066.1    LBMM01007036    KMQ90099.1    LBMM01003245    KMQ93755.1    LBMM01004634    KMQ92224.1    LBMM01008448    KMQ88867.1    LBMM01006725    KMQ90373.1    LBMM01015018    KMQ84954.1    LBMM01008422    KMQ88894.1    LBMM01007425    KMQ89740.1    RSAL01003504    RVE40273.1    LBMM01002480    KMQ94776.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01004505    KMQ92346.1    LBMM01014122    KMQ85315.1    LBMM01012412    KMQ86235.1    KMQ94772.1    LBMM01008278    KMQ89009.1    GGMR01000779    MBY13398.1    LBMM01005465    KMQ91492.1    LBMM01005474    KMQ91485.1    GGMR01014195    MBY26814.1    LBMM01014956    KMQ84982.1    LBMM01003575    KMQ93366.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01005216    KMQ91703.1    ABLF02011238    GGMR01015159    MBY27778.1    LBMM01004262    KMQ92649.1    LBMM01004261    KMQ92650.1    LBMM01013668    KMQ85535.1    ABLF02041886    GGMR01004600    MBY17219.1    GFXV01002090    MBW13895.1    LBMM01021647    KMQ83033.1    ABLF02034925    ABLF02013358    ABLF02013361    ABLF02054869    GFXV01003903    MBW15708.1    ABLF02005203    ABLF02041316    GGMR01015354    MBY27973.1    GBXI01013438    JAD00854.1    ABLF02009991    ABLF02009992    ABLF02054952    ABLF02004854    ABLF02041317    GGMR01006838    MBY19457.1    LBMM01005845    KMQ91162.1    LBMM01012322    LBMM01012138    KMQ86282.1    KMQ86387.1    GAKP01002292    JAC56660.1    KU543683    AMS38371.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    GGMR01011682    MBY24301.1    GGFJ01001369    MBW50510.1    GGFJ01001727    MBW50868.1    GGFJ01001439    MBW50580.1    GALA01001777    JAA93075.1    LBMM01015285    KMQ84870.1    APGK01005465    KB736249    ENN83233.1    ABLF02004597    ABLF02041324    GGFJ01001370    MBW50511.1    KQ971309    EEZ99146.1    GAPW01000192    JAC13406.1    GALA01001776    JAA93076.1    GEHC01000915    JAV46730.1    GGMR01009778    MBY22397.1    GALA01000302    JAA94550.1    ABLF02041557    GGFK01005660    MBW38981.1    KQ972226    KYB24577.1    ABLF02011183    ABLF02041884   

Proteomes

UP000036403    UP000283053    UP000007819    UP000019118    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A3S2N998   A0A0J7KM11   A0A0J7KIY5   A0A0J7KLT9   A0A0J7KJG6   A0A0J7KJH4   A0A0J7KL06   A0A0J7KQK3   A0A0J7JZ13   A0A0J7KYD2   A0A0J7JZF7   A0A0J7N7S8   A0A0J7KLH8   A0A0J7KIM6   A0A0J7NMN5   A0A0J7KPR0   A0A0J7KF37   A0A0J7KIW1   A0A0J7K3R6   A0A0J7KF40   A0A0J7NAV8   A0A3S2LNH8   A0A0J7KWU5   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7MY17   A0A0J7N0R3   A0A0J7KW81   A0A0J7KFH2   A0A2S2N8I2   A0A0J7KMG5   A0A0J7NFZ0   A0A2S2PBP5   A0A0J7K3R2   A0A0J7KSR8   J9LJ80   A0A0J7KMU1   X1WJY4   A0A2S2PEZ7   A0A0J7KQY4   A0A0J7NJI3   A0A0J7MYL9   J9KJG8   A0A2S2NJ82   A0A2H8TIE5   A0A0J7JXX4   J9LVU7   J9JWJ3   A0A2H8TR36   J9KNG8   A0A2S2PEU2   A0A0A1WPA4   J9KPP8   X1WXT5   A0A2S2NQQ6   A0A0J7KLK2   A0A0J7K7P2   A0A034WR48   A0A142LX45   J9KV04   A0A2S2P488   A0A2M4BBV9   A0A2M4BDI3   A0A2M4BC28   T1DCM0   A0A0J7MWN5   N6TYN9   X1WSG8   A0A2M4BC01   D6WC19   A0A023EW96   T1DG89   A0A1W7R6I9   A0A2S2NYY3   T1DG59   J9KUM6   A0A2M4ADW9   A0A139W9J0   X1WZ64  

PDB

6AR3     E-value=9.23284e-05,     Score=111

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

568

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.22018

Exp number, first 60 AAs:

0.00145

Total prob of N-in:

0.00433

outside

1  -  568

 

 

Pi

69.002385

Theta

24.558389

Tajima's D

1.818754

CLR

0.080994

CSRT

0.855357232138393

Interpretation

Uncertain