Gene

KWMTBOMO12478  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001474

Annotation

PREDICTED:_54S_ribosomal_protein_L23?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr21(-):4640408-4641402      View in EpiBrowser

Full name

39S ribosomal protein L23, mitochondrial       + More
Probable 39S ribosomal protein L23, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.343 Mitochondrial   Reliability : 2.008

CDS

ATGTCCACACGGTGGTACCCCATTTATCAAAGAGGAAACCCACAACTTAGAGTATTTTTGCCGAATTTTTGGATGAAATTAGTACGACCACATCCAAAACAACTGCCTAACATCGTGCATTTTCATTGTTCTATGGAAATGACTAAATATGACATTAAAAATTATTTAGAAAAAATTTATGAAGTACCCGTTGTGGATGTGAGGACCAAAATAAATATGGGGAAATTTAAAAAAGATGTTGTCAAAGGTTATGTTATTAAAGAAGATGATGTCAAAGTTGCTTTTGTCACATTACCAAAGACTATGACATTTAAGTATCCAGACCTATTTGAGAAAAGTATTAATGAGGAAGAGGAACATGCGAAATCATTAGATGAATCAAAGAAGAATTTCAGAAAGTACATAGATCATAATAAAAGCAGACCTGATATACCCAGCTGGTTTTCAATCTAA

Protein

MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the universal ribosomal protein uL23 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  39S ribosomal protein L23, mitochondrial

Uniprot

Q2F5Y6   A0A1E1W3C3   A0A437BI00   A0A2A4JM57   A0A212FLB0   A0A2H1WAQ1   + More
A0A0L7LSD8   A0A182YE17   M9PE14   Q9W021   B0WZV6   A0A2M3ZIZ3   B3M6P2   B4HW80   A0A2M3Z9Z9   A0A2M4C2C9   B4PDF5   A0A2M4ASY2   B4LBW0   B4QNH6   Q17AY4   A0A182FKF4   A0A1W4VRD1   B4N365   B4J0I0   A0A1Q3FD93   T1GC99   W5JPZ9   A0A0L0BQZ4   A0A0M4EMD5   A0A1S4F9Q0   A0A182W858   A0A182R928   A0A182NQ29   A0A0A1X962   A0A1I8NWB6   A0A453YJE3   A0A023EGY5   A0A1A9VTX6   A0A1A9Y7B2   A0A1B0AU88   U5EXX4   A0A182SP61   A0A2C9GW57   Q5TUE9   A0A1A9Z674   A0A182JV03   B3NBH6   W8CBZ7   A0A034WR13   A0A0C9PTJ0   B4KV13   A0A0K8W883   A0A1L8EDD5   A0A182WRB7   A0A1L8DRT4   N6U1I6   A0A1B0GHF0   J3JTD0   A0A1L8DRQ3   A0A1I8MDI6   A0A084VJW2   A0A139WIJ7   A0A3B0KM17   B4H5V3   Q2LYS3   A0A0K8TQK2   A0A1W4XL58   A0A2J7Q4Z0   A0A1Y1K9A7   A0A194RPD5   A0A1B0DCH7   A0A336MED3   A0A067RB88   A0A026WFT1   A0A158NMF7   A0A195AZU6   A0A0C9R6R9   A0A1B6FDL6   A0A1B6JGF4   A0A444TQL0   A0A1B6EZ04   A0A0V0G899   A0A023GEK3   G3MMU4   F4X5W4   A0A1J1IHC0   A0A0P4VVM5   T1HK49   A0A1D2MGV7   A0A0A9WQJ2   A0A2A3E4V9   A0A224Z2R5   A0A0L7RCJ2   A0A087ZY44   A0A0P4W6S7   A0A131Z5S9   L7M6B1   R4G8J9   A0A1B6MCV8  

Pubmed

19121390    22118469    26227816    25244985    10731132    12537568    + More
12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12537569    17994087    17550304    22936249    17510324    20920257    23761445    26108605    25830018    24945155    26483478    12364791    24495485    25348373    23537049    22516182    25315136    24438588    18362917    19820115    15632085    26369729    28004739    26354079    24845553    24508170    30249741    21347285    22216098    21719571    27129103    27289101    25401762    26823975    28797301    26830274    25576852   

EMBL

BABH01005897    BABH01005898    DQ311286    ABD36231.2    GDQN01009578    JAT81476.1    + More
RSAL01000055    RVE49969.1    NWSH01001068    PCG72808.1    AGBW02007840    OWR54479.1    ODYU01007395    SOQ50117.1    JTDY01000206    KOB78299.1    AE014296    AGB94020.1    AGB94021.1    AY071415    DS232218    EDS37781.1    EDS37782.1    GGFM01007684    MBW28435.1    CH902618    EDV38692.1    CH480817    EDW50195.1    GGFM01004603    MBW25354.1    GGFJ01010304    MBW59445.1    CM000159    EDW93935.1    GGFK01010549    MBW43870.1    CH940647    EDW69760.1    CM000363    CM002912    EDX08939.1    KMY97085.1    CH477328    EAT43430.1    CH964062    EDW78804.1    CH916366    EDV96816.1    GFDL01009535    JAV25510.1    CAQQ02394369    ADMH02000671    ETN65383.1    JRES01001499    KNC22426.1    CP012525    ALC42905.1    GBXI01006836    JAD07456.1    APCN01006662    JXUM01047141    GAPW01005488    KQ561507    JAC08110.1    KXJ78356.1    JXJN01003556    GANO01000697    JAB59174.1    AXCN02002273    AAAB01008849    CH954178    EDV50298.1    GAMC01000079    JAC06477.1    GAKP01000921    JAC58031.1    GBYB01004678    JAG74445.1    CH933809    EDW18324.1    GDHF01005027    JAI47287.1    GFDG01002052    JAV16747.1    GFDF01004911    JAV09173.1    APGK01053113    KB741221    KB632081    ENN72417.1    ERL88579.1    AJWK01004543    BT126486    AEE61450.1    GFDF01004952    JAV09132.1    ATLV01013905    KE524908    KFB38256.1    KQ971338    KYB27800.1    OUUW01000012    SPP87619.1    CH479212    EDW33170.1    CH379069    EAL29787.1    GDAI01001428    JAI16175.1    NEVH01018372    PNF23652.1    GEZM01088638    JAV58052.1    KQ459896    KPJ19372.1    AJVK01005093    AJVK01005094    UFQS01000867    UFQT01000867    SSX07399.1    SSX27741.1    KK852760    KDR17034.1    KK107238    QOIP01000007    EZA54793.1    RLU21021.1    ADTU01020457    KQ976697    KYM77567.1    GBYB01003660    JAG73427.1    GECZ01021706    JAS48063.1    GECU01009743    JAS97963.1    SAUD01001017    RXG72290.1    GECZ01026547    JAS43222.1    GECL01001722    JAP04402.1    GBBM01002937    JAC32481.1    JO843195    AEO34812.1    GL888742    EGI58204.1    CVRI01000048    CRK98940.1    GDKW01000492    JAI56103.1    ACPB03024245    LJIJ01001323    ODM92132.1    GBHO01033550    GBRD01009328    GDHC01011483    JAG10054.1    JAG56493.1    JAQ07146.1    KZ288369    PBC26767.1    GFPF01009358    MAA20504.1    KQ414616    KOC68461.1    GDRN01085813    GDRN01085812    JAI61284.1    GEDV01001823    JAP86734.1    GACK01006405    JAA58629.1    GAHY01000842    JAA76668.1    GEBQ01006221    JAT33756.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000037510    UP000076408    + More
UP000000803    UP000002320    UP000007801    UP000001292    UP000002282    UP000008792    UP000000304    UP000008820    UP000069272    UP000192221    UP000007798    UP000001070    UP000015102    UP000000673    UP000037069    UP000092553    UP000075920    UP000075900    UP000075884    UP000095300    UP000075840    UP000069940    UP000249989    UP000078200    UP000092443    UP000092460    UP000075901    UP000075886    UP000007062    UP000092445    UP000075881    UP000008711    UP000009192    UP000076407    UP000019118    UP000030742    UP000092461    UP000095301    UP000030765    UP000007266    UP000268350    UP000008744    UP000001819    UP000192223    UP000235965    UP000053240    UP000092462    UP000027135    UP000053097    UP000279307    UP000005205    UP000078540    UP000288706    UP000007755    UP000183832    UP000015103    UP000094527    UP000242457    UP000053825    UP000005203   

PRIDE

Q2F5Y6    M9PE14    Q9W021    G3MMU4   

Pfam

PF00276   Ribosomal_L23        + More
PF03133   TTL

Interpro

IPR013025   Ribosomal_L25/23        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR012678   Ribosomal_L23/L15e_core_dom_sf       
IPR027750   TTLL1       
IPR004344   TTL/TTLL_fam       
IPR013815   ATP_grasp_subdomain_1       

SUPFAM

SSF54189   SSF54189       

Gene 3D

3.30.70.330     3.30.1490.20    

ProteinModelPortal

Q2F5Y6   A0A1E1W3C3   A0A437BI00   A0A2A4JM57   A0A212FLB0   A0A2H1WAQ1   + More
A0A0L7LSD8   A0A182YE17   M9PE14   Q9W021   B0WZV6   A0A2M3ZIZ3   B3M6P2   B4HW80   A0A2M3Z9Z9   A0A2M4C2C9   B4PDF5   A0A2M4ASY2   B4LBW0   B4QNH6   Q17AY4   A0A182FKF4   A0A1W4VRD1   B4N365   B4J0I0   A0A1Q3FD93   T1GC99   W5JPZ9   A0A0L0BQZ4   A0A0M4EMD5   A0A1S4F9Q0   A0A182W858   A0A182R928   A0A182NQ29   A0A0A1X962   A0A1I8NWB6   A0A453YJE3   A0A023EGY5   A0A1A9VTX6   A0A1A9Y7B2   A0A1B0AU88   U5EXX4   A0A182SP61   A0A2C9GW57   Q5TUE9   A0A1A9Z674   A0A182JV03   B3NBH6   W8CBZ7   A0A034WR13   A0A0C9PTJ0   B4KV13   A0A0K8W883   A0A1L8EDD5   A0A182WRB7   A0A1L8DRT4   N6U1I6   A0A1B0GHF0   J3JTD0   A0A1L8DRQ3   A0A1I8MDI6   A0A084VJW2   A0A139WIJ7   A0A3B0KM17   B4H5V3   Q2LYS3   A0A0K8TQK2   A0A1W4XL58   A0A2J7Q4Z0   A0A1Y1K9A7   A0A194RPD5   A0A1B0DCH7   A0A336MED3   A0A067RB88   A0A026WFT1   A0A158NMF7   A0A195AZU6   A0A0C9R6R9   A0A1B6FDL6   A0A1B6JGF4   A0A444TQL0   A0A1B6EZ04   A0A0V0G899   A0A023GEK3   G3MMU4   F4X5W4   A0A1J1IHC0   A0A0P4VVM5   T1HK49   A0A1D2MGV7   A0A0A9WQJ2   A0A2A3E4V9   A0A224Z2R5   A0A0L7RCJ2   A0A087ZY44   A0A0P4W6S7   A0A131Z5S9   L7M6B1   R4G8J9   A0A1B6MCV8  

PDB

6NU3     E-value=1.90352e-24,     Score=273

KEGG

101744664    K02892 large subunit ribosomal protein L23 | (RefSeq) 39S ribosomal protein L23, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0005762   GO:0032543   GO:0005524   GO:0018095   GO:0000166   GO:0005622   GO:0005216   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR12241:SF31  

Subcellular location

Mitochondrion  

Length:

150

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000610000000000001

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.31084

outside

1  -  150

 

 

Pi

184.58987

Theta

172.594599

Tajima's D

0.218625

CLR

0.073041

CSRT

0.431078446077696

Interpretation

Possibly Positive selection