SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12472
Pre Gene Modal
BGIBMGA001478
Annotation
PREDICTED:_protein_SMG5_[Bombyx_mori]
Location
Bomo_Chr21(-):4578239-4582862      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.953
 

Sequence

CDS
ATGAAGAACGGATGTCTCGATTTATCAGAGGCCAAAATTGCGGAGCGCAATGAACGTGCCAAGAAACTTTATCGCTATTTAAGTGATGTAGCAAGACGTATCAATGACATGTCGACTACAAGTAAATTTGTGGCAGACCTCTTTACTACTAACATTGAAGTCCAGAGACAAAAGCTGAGGGACAATTGTGAGAAGTTACTGTTTCTAGATCCAATTAATTACGGCAAGAAAGCACTTGAACTACTATGGAGAAAAGTATATTATGACACTATATCTACTGCCAAAAAGTTGAGAACTGATAGTGAGCATGACCATTTCCTGTTCACCCTCATCCAATGTGGAATTGGTAATTTTCACCATTTCTTAGATAGAATTCATTATGAAATGAAAGTAGATTTCAAGGAGTTAGATTATATGCCCAATACTGAAGAAGATGAGTTGCAACTATCTTCTGGTAATGTTGAACTATCAAATTTTGGAAAATCTGCTTTGCACTCATGTTTGATATATTTAGGGGATTTAAGTCGTTATGCAGTGGAAATATCAAATCACTTTGAACCAACAATTGCTGCTCGATACTACTTACAAGCTGCTCATACTGACTTTACATTGGGAATGCCTTATAATCAATTAGGAAACCTTTATCTTGAAAAAAATTACAACTTGGATTCTGTATGTTTTTATATTCACTGTCTTAATTCTAAAAATCCATTTGAAGGGGCCATGGGTAATCTTACAAAAATATTTGAGAAAAATGATCAGTTTTACCATACAATAAATGAATCAGATACTTTAACTCAGGTTGAACATATACAAAATACAATTGTGAATTTTCTTTCATTAATTGAGATATGGTACTTGAACAAATCTGATTCTGATATTCCTCAGCGCTGCAGCAAAATCGCACAGCAGCTAAAGATTTGTATGGAGTTTAATGAAGCCACACTTCCTGATATTGATAAAAATTATGATGATTATCTATCAATTTTGGAACATGAAACCAATTTTCCATCTTATTTAAATCCAAATCTAATACATCGTATGGTTCTGATTTGTTTATTCACAGTCTCAAAAATGACAGAAATTGATGAAACAAAAGCCTTTGCATGCAAAGCTTTCACTCTTGCTCTTTTGTCTCAACTTTTGTTGAAATTGCTTAAGCAATTGGATTCAATTGGTTTTGTAAATCCTAGGCAGATTCATAATTATGGATCTTCAAAACCACACAATGAACAAACAGAAAAATATGAGAACAATAATGATGAAAATAAAGAAATTATAGAAAGCACAGTGAACAATGGCCAGAATGCAGAACAAGAATTGGAGGAGCAGAAACAAAATAATGTAAAAGAAAACAATCTAAATGGTCATGCTAAGCATGCAAAGAAAGCACTTATGAAACGTCGTCGCCGTCGACGCATTGCCTCTTCAGAAAGTTCTGACGTGAGTGATGCTAATACTGAAAGCAGTGATTTAGATGAAATTGAACATTCATACAGCGACTTGTCAGATTCCTCTGATCAATCTGTATCACTTAGTGAAGCTAGCGATTGTGATGAAGTTAACGATGAAACTAAAGATGAAAGTAGTGAACAAATTAATGAAAAAGTAGAACCAAATAAAATATTGAATGATGATATCACCTCAAAGATTACAGAAACAAATTCACTTAATTCATCAAATTTATTGAATTGTAATACAACAAAATCTCAGGAAAACAGCAAAGTAAACACTATAGAATTGAAAACTTTTTTACAAGGAAACAATTTCATGGCCAGTATCAAGCTGTTGTTGGATTGGATTTTGATTGAAAAAGATTTAATTCTTTCATGTGGAGACAGCGGAGAGTCCTTGTTTCAATGCGTTGTAGATTTGTTAAATATTTTTACATTTTATTTCAATACAAAATCTGATGAGGGGACTAAAGAAGATTGTGAATTAATAAAGTACATTAGAAATTTAGTCATGAAAATGAAACTTGAATACAAGACAATACCCTTACCTGAAGATATAAATTTACGGGGAACAAACATTTGTAAATTTGATAAAGATGCTGCTGAATGGCACATCTTAGAAAAGTATAAATTATCTGTTTATGAAGAAAACGTAATAAGGATTCTTAACTTCATAGATTTTGGGAACCAGATAGCTAAAATTATACCCAGAATAAGATTTAACAGGACCATGAAATTGTTTTATCTAAAAAACATTCACCCTCCTAAATTGAATACCAAAATTAACCATAAAAGAAGTAGAGAATGGCATTCAAAGAAAAATACTGAATCGAATGAAAGTGGATTACTACGGCGCCTTGGTCGACTATGGTTGACATCACAAGTACGCGAGTTGGAACGCAGCGGACAGTCGGCGGCACCTGCATTACTCGTACTTGACACCGCAGCTCTTAACAAACACCTCCGTCGTGTCAAACAGCTCCTACTCACAACCAACTTTGTGCTCATGGTGCCTACAGTTGTGCTACAAGAACTGGACAATTTGAAGCGAGAGCAGAGCACAGCACGTAAAGCTATCCGTTGGTTGGAACTTCAATTAAAAAATGGCTCAAGATTTCTACGAGCACAACGTCCGAACCAGTCAAAGCCCCTGCCGCTCTTGAAATATCCCCGTAAAGCTCCAGCCCATATTAATAACTTTATTCAGATTTTAGAGTTCTGCAATCATTTCGTAGCGGAAGATAAAAAGACGCAAGGATCCGGTGATGCTGAAAACGTTTTACAAGGGAAGTCTTCGTCCGTCCTTATACTACTCGTTGGCAATGCTGATGAAGATGAAGAACAGTATAAAGAATTTAGTGTTATGGGCGCAGCGCAATCGGCCGGCATTTCCGTAGAAAACATCGTAGATTTCTACAGCAAATGGCGACAGACATCGCATAAAAACGGTAAAAAGAGGTGA
Protein
MKNGCLDLSEAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALELLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPTIAARYYLQAAHTDFTLGMPYNQLGNLYLEKNYNLDSVCFYIHCLNSKNPFEGAMGNLTKIFEKNDQFYHTINESDTLTQVEHIQNTIVNFLSLIEIWYLNKSDSDIPQRCSKIAQQLKICMEFNEATLPDIDKNYDDYLSILEHETNFPSYLNPNLIHRMVLICLFTVSKMTEIDETKAFACKAFTLALLSQLLLKLLKQLDSIGFVNPRQIHNYGSSKPHNEQTEKYENNNDENKEIIESTVNNGQNAEQELEEQKQNNVKENNLNGHAKHAKKALMKRRRRRRIASSESSDVSDANTESSDLDEIEHSYSDLSDSSDQSVSLSEASDCDEVNDETKDESSEQINEKVEPNKILNDDITSKITETNSLNSSNLLNCNTTKSQENSKVNTIELKTFLQGNNFMASIKLLLDWILIEKDLILSCGDSGESLFQCVVDLLNIFTFYFNTKSDEGTKEDCELIKYIRNLVMKMKLEYKTIPLPEDINLRGTNICKFDKDAAEWHILEKYKLSVYEENVIRILNFIDFGNQIAKIIPRIRFNRTMKLFYLKNIHPPKLNTKINHKRSREWHSKKNTESNESGLLRRLGRLWLTSQVRELERSGQSAAPALLVLDTAALNKHLRRVKQLLLTTNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQILEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGISVENIVDFYSKWRQTSHKNGKKR

Summary

Uniprot
H9IW47   A0A212FL77  
Pubmed
19121390    22118469   
EMBL
BABH01005888    BABH01005889    AGBW02007840    OWR54487.1   
Proteomes
UP000005204    UP000007151   
PRIDE
H9IW47   
Pfam
PF13638   PIN_4        + More
PF10373   EST1_DNA_bind
PF10374   EST1
Interpro
IPR002716   PIN_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR018834   DNA/RNA-bd_Est1-type       
IPR019458   EST1       
SUPFAM
SSF48452   SSF48452       
Gene 3D
1.25.40.10    
ProteinModelPortal
H9IW47   A0A212FL77  
PDB
2HWY     E-value=4.89017e-11,     Score=167

Ontologies

KEGG
101743604    K11125 protein SMG5 | (RefSeq) protein SMG5
PATHWAY
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0005622   GO:0005840   GO:0006412   GO:0015934   GO:0005216   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

Topology

Length:
971
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.08059
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00133
outside
1  -  971
 
 

Population Genetic Test Statistics

Pi
240.076579
Theta
224.755498
Tajima's D
-1.398451
CLR
0.082922
CSRT
0.0702964851757412
Interpretation
Uncertain
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