SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12471
Pre Gene Modal
BGIBMGA001494
Annotation
PREDICTED:_protein_AF-9_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 4.299
 

Sequence

CDS
ATGTCACCTATAAGAGTTAATTTTGAAATCGGACACGAAGCCACTTTAAAGCCTAAAAAGACTCCAGACGGATTCACTCATGACTGGGAAGTGTTTGTTCGCGGTCAGGAAGGTGTAGATATAAGTCATTTCATCAATAAAGTTGTGTTTCATCTTCATCACACCTTTCTGAAACCACGACGAGTTGTTAAAGACCCACCATTCTCTATTAAGGAATCTGGATATGCAGGGTTCACCTTACCCATAGAAATATACTTAAAAAATAAAGATGAACCCAAAAAGATAACTTTTTCCTACAATTTAACATTACAACAAAATGGATTTCTTAAAGACCGCTATATCTTTAAAAATCCTAGTGACGAATTTAGTAAAAAGCTTCTAAAAGGAGGTGGCATACCATGTACAAATAGTGAACTTTACACTAATCCAGACCAAGAAAGTAGAAGTAGAGACTCATTTACTGATGAAAAGCACTTAGTTAGCAAACCAAAACTGTCTTCAGAAAATAATAAAAAACACAAAACAAAAGAACACAAAGATGATGTACCTATGAGGAATAGTAGTTTTGTAAATTTATTTGGGCCTCCCATACACAAACCTGCTAAAGTTTCACCTGATCCTAAGAAAATTGAAAAGGTCACACCACCAATAAAATTAGAGAAAAAAGATAAGGAAAGATCAAGCTCAGAGAAGAAATCCAAACATGAACATAAAGAATCAAAAATAGAAAAAAACAAAACAAAAGATGAAAGAGAGAAAAATAGGCCAGATAAAGTTAAAACTCCTAGTAAAGATCAAGAGAAAATCAAAGAAAAAGCATCAAAAAGGCCCAGTGATAGACCTGCCTCACCTGATGCTGTTAAAAAGCGTTGTCTCAGTCCAATTGGACGGTCAACCAGTTCCCCACTACGTGCAAACAGTGTTGCCAGCAATAAAGAAGAATATAAACCAGCTCGGCAAAATCTTGAGCTTTTGGATCACAAAAAACCAAGGCCTGATGAAAAACACGAAATGAAAGCAGAAAAAGAAAAAAAGAAAAAAGAAAAGAAAAGTCATGACAGAGATAAAGAAAGAAAGGAAAGAAAAGATCACAAAAAAGAAAGTCACAGGTCAAAAGAATCCCCAAAAGAAATCCCTAAAGAGAAGGAACTACCTCATAAGGTCAAGGACATAATCAAAGAAAAAGAATCACCCCCCATAAAAGAGAAACAAGCGAGGCCGGAGAAAACAATTAACAAATTCTCAATAGAAAACTTACGGAAAACACCTCCTCCAGAAATCGATGAACGGTCTGAAACCCCTAAAAAAGATAAAAATGAAACTGAACGAAAACATAAACATAAGAAAAAAGATAAAAAGAGAGATGAGTCAAAAGAAAAGCATAAAGACTCTAGTAAAGAAAAGAGACATAAACACGAAAAAACCAGAGAAACACCAACAGAAAAAGTTATACATAGGATAACACCTATTCCCAAAGAAAGACTACTTCCCGAACCAACATCTCCTATATCAATTGATACAGCATCTCAATGTAGTTCGAAAAGTGGAGTGGCTAAACCTATGCTTTTAGAAGGTGAGGAAATAAACAGCAGTCAATCTGATTCAGAAAATTCGGTTATATGTGAAGACGATGAACCCAAAATTGTTAAAATCGAGCCTCCCTCGCCAGAAATAGTAAAGCAAGAGCCTTCTCCTGAACCTGAGCCTCAACCAGAGCCTGAACCAGAACCAGAAGTAAAACCAGACCCACAACCTTTAGCTGAAGTTCCTCCGCCTCCACATAAAGAAAAATCAAAAAAACACAAGGATAAATCAAAAAAAGAAGAAAAAAGACGCAAAAGAAAAGCTGCTGAAGAAGAAGTTGAAAGAAAAATTCCTAACATACCTGAATCAGGGCCTTCTTACAATGAGACTGAATGGGGTGAAAGTAGTGGTTCAACGTCAATGGAAACTAAAGTTCAAGATAATGGGGTGTCTAGTAGTCTAGGAGAAGATGCAGAACTTGGGGATATTTCCCCGGATTACATGGAGCAACTTCGAGACTTACAACAAAGAATCATGAAAATAAAAAATAATGAAGATCTAGAAAGAGTCGTGAACTTAATAGCGGAAACGGGACGCTATGAAGTCACCACTCAGACATTTGATTTTGATTTGTGTCTGTTGGATCGATCAACAGTTCAACAGCTCATACAATTAGTAGGCTGCTAA
Protein
MSPIRVNFEIGHEATLKPKKTPDGFTHDWEVFVRGQEGVDISHFINKVVFHLHHTFLKPRRVVKDPPFSIKESGYAGFTLPIEIYLKNKDEPKKITFSYNLTLQQNGFLKDRYIFKNPSDEFSKKLLKGGGIPCTNSELYTNPDQESRSRDSFTDEKHLVSKPKLSSENNKKHKTKEHKDDVPMRNSSFVNLFGPPIHKPAKVSPDPKKIEKVTPPIKLEKKDKERSSSEKKSKHEHKESKIEKNKTKDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKEEYKPARQNLELLDHKKPRPDEKHEMKAEKEKKKKEKKSHDRDKERKERKDHKKESHRSKESPKEIPKEKELPHKVKDIIKEKESPPIKEKQARPEKTINKFSIENLRKTPPPEIDERSETPKKDKNETERKHKHKKKDKKRDESKEKHKDSSKEKRHKHEKTRETPTEKVIHRITPIPKERLLPEPTSPISIDTASQCSSKSGVAKPMLLEGEEINSSQSDSENSVICEDDEPKIVKIEPPSPEIVKQEPSPEPEPQPEPEPEPEVKPDPQPLAEVPPPPHKEKSKKHKDKSKKEEKRRKRKAAEEEVERKIPNIPESGPSYNETEWGESSGSTSMETKVQDNGVSSSLGEDAELGDISPDYMEQLRDLQQRIMKIKNNEDLERVVNLIAETGRYEVTTQTFDFDLCLLDRSTVQQLIQLVGC

Summary

Uniprot
Pfam
PF03366   YEATS        + More
PF17793   AHD
Interpro
IPR023395   Mt_carrier_dom_sf        + More
IPR038704   YEAST_sf       
IPR040930   AF-9_AHD       
IPR005033   YEATS       
SUPFAM
SSF103506   SSF103506       
Gene 3D
ProteinModelPortal
PDB
6HT1     E-value=1.13313e-34,     Score=370

Ontologies

Topology

Subcellular location
Nucleus  
Length:
736
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00008
outside
1  -  736
 
 

Population Genetic Test Statistics

Pi
139.101385
Theta
156.881058
Tajima's D
-0.508299
CLR
0.156087
CSRT
0.23958802059897
Interpretation
Uncertain
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