Gene

KWMTBOMO12470

Annotation

39S_ribosomal_protein_L34?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr21(-):4569573-4570122      View in EpiBrowser

Full name

39S ribosomal protein L34, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 1.71 Nuclear   Reliability : 1.255

CDS

ATGTCAGGACTAATTTCAACAATCCTCCAACCCCTAAAACTCATTAGGCAATCATCAATTTACACAGGAGTGAGCTCGAGTTTAGTGAGACCAGATGCGTTTTTGTTGTCCTCAATTAGGACCAAAGTAAGATGCTATTTTCCACGACCTAATGAGGTTAAAAGAGTTCGACGTCACGGATGGGATTTCAGGATGTCTACTCCAAATGGTCGCCGCATTATAATGAGGAGATTATTGAAAGGGAGACATGTTCTCACACATTAG

Protein

MSGLISTILQPLKLIRQSSIYTGVSSSLVRPDAFLLSSIRTKVRCYFPRPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRHVLTH

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the bacterial ribosomal protein bL34 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   Transit peptide  

Feature

chain  39S ribosomal protein L34, mitochondrial

Uniprot

A0A2H1W8Y0   A0A194RPX4   A0A212FLB9   A0A3S2NHX8   A9NLY5   A0A2P8ZP76   + More
B3MF53   A0A0C9RMU6   A0A069DVC0   B4KQB3   A0A0V0G873   A0A3B0JMT6   B4J9X9   B5E0V0   B4GG40   A0A0P4XB99   A0A165A8Y6   B4LL54   A0A0M5IXE1   A0A158NJN2   A0A0P4WV34   B3NPX8   E9FQY2   A0A0J9U396   Q0E959   F0JAS9   A0A1A9Z816   A0A1B0FQI8   B4P6R7   A0A0L7RBL3   A0A088AJ77   K7JAS1   A0A2A3EV83   A0A0N7ZA12   A0A195EJG0   A0A182PQ10   A0A1J1IBH9   A0A182XV26   A0A3L8DYV0   A0A023EEJ6   A0A1I8JW53   A0A2Y9D2X0   A0A2Y9D1I7   A0A3F2YZL7   Q7QD26   A0A023ECK3   A0A1Q3FIC8   A0A2Y9D138   A0A2C9H6F6   A0A182H8U4   A0A182RVA0   A0A2P6KQG4   B0XEL2   T1J9L9   A0A0Q9X8E2   A0A0Q9X5D0   A0A154PGM5   A0A1B6H5K7   A0A1D2NE72   A0A091JT10  

Pubmed

26354079    22118469    18854048    29403074    17994087    26334808    + More
15632085    21347285    21292972    22936249    10731132    12537572    17550304    20075255    25244985    30249741    24945155    20966253    12364791    14747013    17210077    26483478    27289101   

EMBL

ODYU01007046    SOQ49473.1    KQ459896    KPJ19365.1    AGBW02007840    OWR54489.1    + More
RSAL01000033    RVE51514.1    EF082277    ABK21646.1    PYGN01000005    PSN58306.1    CH902619    EDV37681.1    GBYB01014752    JAG84519.1    GBGD01003635    JAC85254.1    CH933808    EDW09241.1    GECL01002160    JAP03964.1    OUUW01000001    SPP73951.1    CH916367    EDW02566.1    CM000071    EDY69422.1    CH479183    EDW35460.1    GDIP01244333    JAI79068.1    LRGB01000642    KZS17315.1    CH940648    EDW61861.2    CP012524    ALC41298.1    ADTU01018079    GDIP01250403    JAI72998.1    CH954179    EDV55825.2    GL732523    EFX90062.1    CM002911    KMY94155.1    AE013599    BT126121    ADZ17402.1    CCAG010008844    CM000158    EDW91994.1    KQ414617    KOC68228.1    AAZX01002164    AAZX01002166    AAZX01002168    AAZX01011558    AAZX01023964    AAZX01024388    KZ288185    PBC34981.1    GDRN01106499    JAI57560.1    KQ978782    KYN28388.1    CVRI01000047    CRK97629.1    QOIP01000003    RLU25295.1    GAPW01006524    JAC07074.1    AAAB01008859    EAA07565.3    GAPW01006525    JAC07073.1    GFDL01007725    JAV27320.1    APCN01000591    JXUM01029664    KQ560860    KXJ80606.1    MWRG01006988    PRD28548.1    DS232844    EDS26073.1    JH431976    CH964282    KRG00243.1    KRG00242.1    KQ434899    KZC10957.1    GECU01037759    JAS69947.1    LJIJ01000070    ODN03549.1    KK531928    KFP28297.1   

Proteomes

UP000053240    UP000007151    UP000283053    UP000245037    UP000007801    UP000009192    + More
UP000268350    UP000001070    UP000001819    UP000008744    UP000076858    UP000008792    UP000092553    UP000005205    UP000008711    UP000000305    UP000000803    UP000092445    UP000092444    UP000002282    UP000053825    UP000005203    UP000002358    UP000242457    UP000078492    UP000075885    UP000183832    UP000076408    UP000279307    UP000076407    UP000075903    UP000075882    UP000075902    UP000007062    UP000075840    UP000075920    UP000069940    UP000249989    UP000075900    UP000002320    UP000007798    UP000076502    UP000094527   

PRIDE

Q0E959   

Pfam

PF00468   Ribosomal_L34

Interpro

IPR000271   Ribosomal_L34       

ProteinModelPortal

A0A2H1W8Y0   A0A194RPX4   A0A212FLB9   A0A3S2NHX8   A9NLY5   A0A2P8ZP76   + More
B3MF53   A0A0C9RMU6   A0A069DVC0   B4KQB3   A0A0V0G873   A0A3B0JMT6   B4J9X9   B5E0V0   B4GG40   A0A0P4XB99   A0A165A8Y6   B4LL54   A0A0M5IXE1   A0A158NJN2   A0A0P4WV34   B3NPX8   E9FQY2   A0A0J9U396   Q0E959   F0JAS9   A0A1A9Z816   A0A1B0FQI8   B4P6R7   A0A0L7RBL3   A0A088AJ77   K7JAS1   A0A2A3EV83   A0A0N7ZA12   A0A195EJG0   A0A182PQ10   A0A1J1IBH9   A0A182XV26   A0A3L8DYV0   A0A023EEJ6   A0A1I8JW53   A0A2Y9D2X0   A0A2Y9D1I7   A0A3F2YZL7   Q7QD26   A0A023ECK3   A0A1Q3FIC8   A0A2Y9D138   A0A2C9H6F6   A0A182H8U4   A0A182RVA0   A0A2P6KQG4   B0XEL2   T1J9L9   A0A0Q9X8E2   A0A0Q9X5D0   A0A154PGM5   A0A1B6H5K7   A0A1D2NE72   A0A091JT10  

PDB

6NU3     E-value=2.70688e-06,     Score=115

KEGG

101743322    K02914 large subunit ribosomal protein L34 | (RefSeq) 39S ribosomal protein L34, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0005762   GO:0032543   GO:0016021   GO:0005622   GO:0015934   GO:0005216   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR14503  

Subcellular location

Mitochondrion  

Length:

87

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04286

Exp number, first 60 AAs:

0.04286

Total prob of N-in:

0.10538

outside

1  -  87

 

 

Pi

169.952902

Theta

175.669521

Tajima's D

-0.128056

CLR

7.772297

CSRT

0.331083445827709

Interpretation

Uncertain