Gene
KWMTBOMO12468
Pre Gene Modal
BGIBMGA001479
Annotation
PREDICTED:_class_E_vacuolar_protein-sorting_machinery_protein_hse1-like_isoform_X2_[Bombyx_mori]
Location in the cell
Extracellular Reliability : 2.687
Sequence
CDS
ATGTTTGGTAAAGCTGTGTTATGTTTGACGACTCTACAATTATATTGTGTTACGGCTCAAGGAGATTGCAGTGATCTGCGAGGTCGAGTCATTTCCCACGGCATACATTACGTGCCCGGACCAAACTCCTGTAACCTTTGTATATGCGATAATGGACTACCTAAAGACTGCAAAGTTGTACTGTGTTCGCCACCCCAGGATTGTCGCTCATTTCGAGTCGGCAACAATTGCTGCGAGTTTATTTGCTTAGATGATGTAGTGAAGCCACCTGACTCAAACGAGTCGAACTTCCGTGGGGCAGCTGGCGGTGCTGCGGCAGTAGTGGTGCTCACAGTACTGTTAGTACTGTACAGAGTAAGGAACCAGAAGCGTAGACGTCCACCACATGGGGATGACCAAAGAAGCCTGACTAGTATTGGGTACATCAGTGGAAGCATGGGCTACATGGGTGGCACTTGTGAGACAGCTCTGGGTGCCTGGAAGCCACATGGTTACTATCTGCCAAGGGGTGAAGCGCCTCCACCTTATGATGAGGCTGTGGCACAGTGCAGACAGGAAGTCATGAGGATTCAAAGTGAAGCAGCTTTTCACCGAACATATCCTGCAACAGTAGAGTCTCTCACTAGGCCAGATGAGGCCATGCAGTGTGTCGGTCATGGCTATGCTAATATTCCACGACCTGTTCAACAGTTGGTGAATCCTCAGAACTGCTACAACACTCCTCTACTGCAGGCTGTGCACACGACTGACGCTCGGGACCCAAATCAAATCCAACACCACCCCTTAGGCCCTCCTGGAGGAGTGGGATTCCCCAGCGCCATCCGTTTAACCGGCTCTCTGGGTACCATCAACAACCGCGGTTTGTTATCCGTGTTACATGATCACGATCGTCCCAACTTGTACCCTAATCCTGGGAGTTTACACACTCCATTCCACCGCACCATCCCGCTGGGGGGGCCGGGCGCGGACGTGCGGCGCTCGTTCCACCGCGCGCCCCCCCCGCGCCCCCACACCGGCCGCTCCGTGCCGCGCAACCTGGACCTGGCCGCCGGACCGCACGCCGCGCCCGACGCCGCACCGGACGTCGGGCCAATATTGCGGACCAATAGCGCCGGACAGACACGGACACGCAGCGAGGAACAGAACGTGGGTGGAGCGGTGACCACAAATGCTAATGCTAACGCGGGAGCTGCTGGGAACAACGCGGCTGTGGCGGACAGCGCGGGGGCTGTCCCGAGCGCGGGCGAGGGGGGTGCCCCTCCCGCCCCCGACGCGCCCCTTCCACCCCCACACAACACATTACCCCTCACTGTGGACAAGCCGTCGTGCGTGTGCAGCTACGAAGCCCCGGCCGCTCCCGGGGGCGAGGACGCCGACGACTACCGCAGCGAGTGCGAGAACTGCAAGTCCGCCAGCAGCTCCAAATGGTCGTCGTCGGACGGCGCGTGGGAGGGCGCCGGCACGCAGACCCTGCAGCGCCGCGCGCCGCCCCCGCCCGCGCCCGCGCCCGCCACCGCCACCCTGCCGCAGCCCGTCACCAAGCAGAGTCGATCACTGATGGGTCAGCCTTCGAACTGGGAGAACTGGTTTAACGCGATCCCCGATTCGGACAGCGAATCCGAAGAAGAGTAA
Protein
MFGKAVLCLTTLQLYCVTAQGDCSDLRGRVISHGIHYVPGPNSCNLCICDNGLPKDCKVVLCSPPQDCRSFRVGNNCCEFICLDDVVKPPDSNESNFRGAAGGAAAVVVLTVLLVLYRVRNQKRRRPPHGDDQRSLTSIGYISGSMGYMGGTCETALGAWKPHGYYLPRGEAPPPYDEAVAQCRQEVMRIQSEAAFHRTYPATVESLTRPDEAMQCVGHGYANIPRPVQQLVNPQNCYNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHRTIPLGGPGADVRRSFHRAPPPRPHTGRSVPRNLDLAAGPHAAPDAAPDVGPILRTNSAGQTRTRSEEQNVGGAVTTNANANAGAAGNNAAVADSAGAVPSAGEGGAPPAPDAPLPPPHNTLPLTVDKPSCVCSYEAPAAPGGEDADDYRSECENCKSASSSKWSSSDGAWEGAGTQTLQRRAPPPPAPAPATATLPQPVTKQSRSLMGQPSNWENWFNAIPDSDSESEEE
Summary
Uniprot
Pubmed
Proteomes
PRIDE
Interpro
IPR001007
VWF_dom
ProteinModelPortal
Ontologies
KEGG
GO
Topology
SignalP
Position: 1 - 21,
Likelihood: 0.996961
Length:
543
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
38.25297
Exp number, first 60 AAs:
0.12275
Total prob of N-in:
0.04194
outside
1 - 99
TMhelix
100 - 117
inside
118 - 137
TMhelix
138 - 160
outside
161 - 543
Population Genetic Test Statistics
Pi
199.120578
Theta
172.44284
Tajima's D
0.089443
CLR
102.55608
CSRT
0.393080345982701
Interpretation
Possibly Positive selection
