SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12460  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001483
Annotation
PREDICTED:_40S_ribosomal_protein_S17_[Amyelois_transitella]
Full name
40S ribosomal protein S17      
Location in the cell
Nuclear   Reliability : 2.455
 

Sequence

CDS
ATGTGTGTAAAAAGATTTGCCACACATTTAATGAGGCGTCTCAGACACTCGCAAGTGCGAGGAATCTCTATCAAACTTCAGGAAGAGGAGCGTGAGAGGCGTGACAACTATGTCCCAGAAGTGTCTGCTCTCGAACATGACATCATCGAAGTAGACCCCGACACCAAGGATATGTTGAAGATGCTGGACTTCAACAATATTAATGGCCTGCAACTAACACAGCCAGCTACCCAGGGTGGCTATGGTGGCAGGCGTAATTAA
Protein
MCVKRFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN

Summary

Similarity
Belongs to the eukaryotic ribosomal protein eS17 family.
Keywords
Ribonucleoprotein   Ribosomal protein  
Feature
chain  40S ribosomal protein S17
EMBL
KQ460211    KPJ16499.1    NWSH01000372    PCG76868.1    AK402598    BAM19220.1    + More
RSAL01000033    RVE51505.1    GDQN01004222    JAT86832.1    AK401165    BAM17787.1    AY769333    AAV34875.1    GU084287    ACY95320.1    AF400214    BABH01005868    KQ459585    KPI98359.1    EF207952    ABS57432.1    JF265048    AEL28879.1    ODYU01008712    SOQ52534.1    AGBW02010111    OWR49149.1    HQ424754    ADT80698.1    JTDY01004240    KOB68404.1    MG992447    AXY94885.1    AB180423    BAD26667.1    KK852463    KDR23421.1    UFQS01000164    UFQT01000164    UFQT01000683    SSX00665.1    SSX21045.1    SSX26537.1    PYGN01000102    PSN54288.1    AM048971    CAJ17206.1    NEVH01020350    PNF21374.1    GDHC01005447    JAQ13182.1    EF541358    ABQ18249.1    GBHO01004181    JAG39423.1    GU120454    ACY71304.1    DS234995    EEB10115.1    GDJX01023461    JAT44475.1    AJ783887    CAH04335.1    GL762454    EFZ21455.1    GL449036    EFN83368.1    KQ976401    KYM92411.1    GL444002    EFN61397.1    KQ977871    KYM99203.1    GU471222    ADC34228.1    ADTU01013450    GDHC01014916    JAQ03713.1    AJ783885    CAH04333.1    AJ783886    CAH04334.1    KQ981490    KYN41175.1    KK107489    EZA49877.1    KQ971352    EFA07317.1    GEZM01031312    JAV84940.1    LBMM01000198    KMR04507.1    QOIP01000010    RLU17698.1    GL888292    EGI63135.1    GEBQ01002931    JAT37046.1    QOIP01000008    RLU19644.1    AAZX01017041    GALX01000539    JAB67927.1    APGK01059439    KB741293    KB632046    ENN70273.1    ERL88282.1    DQ673392    ABG81965.1    GECZ01028231    GECZ01020002    JAS41538.1    JAS49767.1    GECU01029365    GECU01008645    JAS78341.1    JAS99061.1    GEDC01023252    JAS14046.1    KK107064    EZA60885.1    GFDL01010529    JAV24516.1    GANO01001048    JAB58823.1    DS231885    EDS43214.1    BT128367    AEE63325.1    GDAI01001204    JAI16399.1    GANO01001062    JAB58809.1    GBYB01002746    JAG72513.1    GAKP01005839    JAC53113.1    GBXI01010518    JAD03774.1    GDHF01018909    GDHF01017370    GDHF01016297    GDHF01006577    JAI33405.1    JAI34944.1    JAI36017.1    JAI45737.1    GDIQ01040739    GDIQ01004345    JAN53998.1    GFDF01004923    JAV09161.1    GDKW01000898    JAI55697.1    GECL01003698    JAP02426.1    ACPB03005019    GAHY01000891    JAA76619.1    EF638968    GEMB01000102    ABR27853.1    JAS03009.1    AJVK01023857    KM267674    AIU94800.1    CH963847    EDW73476.2    OUUW01000002    SPP77326.1    CH379067    EAL31355.2    CH479202    EDW30193.1    KQ434775    KZC04044.1    KQ435735    KOX77134.1    KZ288254    PBC30822.1    JR048093    AEY60575.1    EU032340    ABV44707.1    GFTR01002206    JAW14220.1    GFDG01001427    JAV17372.1    GBYB01003705    JAG73472.1    KQ435737    KOX76900.1    GFDG01001425    JAV17374.1    KQ414613    KOC69101.1    SPP77325.1    KC507314    AHB12437.1    AK417136    BAN20351.1    KM267684    AIU94810.1   
Pfam
PF00833   Ribosomal_S17e
Interpro
IPR001210   Ribosomal_S17e        + More
IPR018273   Ribosomal_S17e_CS       
IPR036401   RPS17e-like_sf       
SUPFAM
SSF116820   SSF116820       
Gene 3D
PDB
4V6W     E-value=3.44444e-27,     Score=295

Ontologies

Topology

Length:
86
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00114
Exp number, first 60 AAs:
0
Total prob of N-in:
0.46799
outside
1  -  86
 
 

Population Genetic Test Statistics

Pi
192.342881
Theta
148.144169
Tajima's D
0.937812
CLR
0
CSRT
0.638918054097295
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 MLDFNNINGLQLTQPATQGGYGGR 100.00 8e-13
28556443 MLDFNNINGLQLTQPATQGGYGGR 100.00 8e-13
28556443 MLDFNNINGLQLTQPATQGGYGGR 100.00 8e-13
28556443 LTLDFDTNKR 100.00 8e-13
28556443 ICEEIAIIPTKPLR 100.00 8e-13
28556443 IAGFATHLM 100.00 2e-10
28556443 YTISPHGSGYGSDDTAPTIIIK 100.00 2e-10
26822097 ITIDFDTNK 95.45 3e-10
26280517 DNVVYSAPVTDGASPVEK 95.45 3e-10
25044914 DNYSPGWK 95.45 3e-10
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