Gene

KWMTBOMO12460  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001483

Annotation

PREDICTED:_40S_ribosomal_protein_S17_[Amyelois_transitella]

Location

Bomo_Chr21(-):4417937-4418422      View in EpiBrowser

Full name

40S ribosomal protein S17      

Location in the cell

Nuclear   Reliability : 2.455

CDS

ATGTGTGTAAAAAGATTTGCCACACATTTAATGAGGCGTCTCAGACACTCGCAAGTGCGAGGAATCTCTATCAAACTTCAGGAAGAGGAGCGTGAGAGGCGTGACAACTATGTCCCAGAAGTGTCTGCTCTCGAACATGACATCATCGAAGTAGACCCCGACACCAAGGATATGTTGAAGATGCTGGACTTCAACAATATTAATGGCCTGCAACTAACACAGCCAGCTACCCAGGGTGGCTATGGTGGCAGGCGTAATTAA

Protein

MCVKRFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN

Similarity

Belongs to the eukaryotic ribosomal protein eS17 family.

Keywords

Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S17

Uniprot

A0A194RGC2   A0A2A4JYV9   I4DMT0   A0A437BMI5   A0A1E1WIM7   I4DIP7   + More
Q5UAM5   D1LYL3   Q962R2   H9IW52   A0A194Q038   A7KCW4   G0ZEH0   A0A2H1WJA7   A0A212F614   E7DZ51   A0A0L7KZF2   A0A3G1T1N0   Q6F467   A0A067RHS7   A0A336LT32   A0A2P8ZCR8   Q4GXQ2   A0A2J7PYH7   A0A146M2H0   A5HMP2   A0A0A9Z7U0   D1M830   E0V9P6   A0A1D1XQ01   A0A1W4WSI4   Q6EUY4   E9ID71   E2BLN4   A0A195BWS5   E2AYV2   A0A151IEF9   D3KD00   A0A158NEI8   A0A146L5M2   Q6EUY6   Q6EUY5   A0A195FKI1   A0A026W1D6   D6WTW8   A0A1Y1MJZ0   A0A0J7L9E1   A0A3L8DCQ1   F4WRX8   A0A1B6MM82   A0A3L8DGT6   K7JAI6   V5H141   N6SYI9   Q0PXZ4   A0A1B6EUI2   A0A1B6HUL3   A0A1B6CKU2   A0A026WXT7   A0A1Q3FAB7   U5EXA4   B0WC62   J3JYN8   A0A0K8TPU7   U5EZC1   A0A1I8QF05   A0A0C9R7K5   A0A034WH81   A0A0A1WXJ6   A0A0K8V497   A0A0P6GVU4   A0A1L8DRY8   A0A0P4VME1   A0A0V0G4X0   R4G4C3   A6YPF7   A0A1B0D409   A0A0A0R236   B4MMS0   A0A3B0JVC5   Q29FA0   B4H1L6   A0A154NY80   A0A0N0BI35   A0A2A3EHS2   V9IHR8   A0A088ANM8   A0A1I8MSV1   A8C9W2   A0A224XZZ9   A0A1L8EF83   A0A0C9R6X9   A0A0M9A475   A0A1L8EFD0   A0A0L7REE3   A0A3B0J6C8   A0A0X7YAT6   A0A182IZ62   R4WND8   A0A0A0R243  

Pubmed

26354079    22651552    14668217    19121390    17603110    22118469    + More
26227816    24845553    29403074    26823975    25401762    20566863    21282665    20798317    21347285    24508170    18362917    19820115    28004739    30249741    21719571    20075255    23537049    22516182    26369729    25348373    25830018    27129103    18207082    17994087    15632085    25315136    17760985    23691247   

EMBL

KQ460211    KPJ16499.1    NWSH01000372    PCG76868.1    AK402598    BAM19220.1    + More
RSAL01000033    RVE51505.1    GDQN01004222    JAT86832.1    AK401165    BAM17787.1    AY769333    AAV34875.1    GU084287    ACY95320.1    AF400214    BABH01005868    KQ459585    KPI98359.1    EF207952    ABS57432.1    JF265048    AEL28879.1    ODYU01008712    SOQ52534.1    AGBW02010111    OWR49149.1    HQ424754    ADT80698.1    JTDY01004240    KOB68404.1    MG992447    AXY94885.1    AB180423    BAD26667.1    KK852463    KDR23421.1    UFQS01000164    UFQT01000164    UFQT01000683    SSX00665.1    SSX21045.1    SSX26537.1    PYGN01000102    PSN54288.1    AM048971    CAJ17206.1    NEVH01020350    PNF21374.1    GDHC01005447    JAQ13182.1    EF541358    ABQ18249.1    GBHO01004181    JAG39423.1    GU120454    ACY71304.1    DS234995    EEB10115.1    GDJX01023461    JAT44475.1    AJ783887    CAH04335.1    GL762454    EFZ21455.1    GL449036    EFN83368.1    KQ976401    KYM92411.1    GL444002    EFN61397.1    KQ977871    KYM99203.1    GU471222    ADC34228.1    ADTU01013450    GDHC01014916    JAQ03713.1    AJ783885    CAH04333.1    AJ783886    CAH04334.1    KQ981490    KYN41175.1    KK107489    EZA49877.1    KQ971352    EFA07317.1    GEZM01031312    JAV84940.1    LBMM01000198    KMR04507.1    QOIP01000010    RLU17698.1    GL888292    EGI63135.1    GEBQ01002931    JAT37046.1    QOIP01000008    RLU19644.1    AAZX01017041    GALX01000539    JAB67927.1    APGK01059439    KB741293    KB632046    ENN70273.1    ERL88282.1    DQ673392    ABG81965.1    GECZ01028231    GECZ01020002    JAS41538.1    JAS49767.1    GECU01029365    GECU01008645    JAS78341.1    JAS99061.1    GEDC01023252    JAS14046.1    KK107064    EZA60885.1    GFDL01010529    JAV24516.1    GANO01001048    JAB58823.1    DS231885    EDS43214.1    BT128367    AEE63325.1    GDAI01001204    JAI16399.1    GANO01001062    JAB58809.1    GBYB01002746    JAG72513.1    GAKP01005839    JAC53113.1    GBXI01010518    JAD03774.1    GDHF01018909    GDHF01017370    GDHF01016297    GDHF01006577    JAI33405.1    JAI34944.1    JAI36017.1    JAI45737.1    GDIQ01040739    GDIQ01004345    JAN53998.1    GFDF01004923    JAV09161.1    GDKW01000898    JAI55697.1    GECL01003698    JAP02426.1    ACPB03005019    GAHY01000891    JAA76619.1    EF638968    GEMB01000102    ABR27853.1    JAS03009.1    AJVK01023857    KM267674    AIU94800.1    CH963847    EDW73476.2    OUUW01000002    SPP77326.1    CH379067    EAL31355.2    CH479202    EDW30193.1    KQ434775    KZC04044.1    KQ435735    KOX77134.1    KZ288254    PBC30822.1    JR048093    AEY60575.1    EU032340    ABV44707.1    GFTR01002206    JAW14220.1    GFDG01001427    JAV17372.1    GBYB01003705    JAG73472.1    KQ435737    KOX76900.1    GFDG01001425    JAV17374.1    KQ414613    KOC69101.1    SPP77325.1    KC507314    AHB12437.1    AK417136    BAN20351.1    KM267684    AIU94810.1   

Proteomes

UP000053240    UP000218220    UP000283053    UP000005204    UP000053268    UP000007151    + More
UP000037510    UP000027135    UP000245037    UP000235965    UP000009046    UP000192223    UP000008237    UP000078540    UP000000311    UP000078542    UP000005205    UP000078541    UP000053097    UP000007266    UP000036403    UP000279307    UP000007755    UP000002358    UP000019118    UP000030742    UP000002320    UP000095300    UP000015103    UP000092462    UP000007798    UP000268350    UP000001819    UP000008744    UP000076502    UP000053105    UP000242457    UP000005203    UP000095301    UP000053825    UP000075880   

PRIDE

Q5UAM5    Q962R2    H9IW52   

Pfam

PF00833   Ribosomal_S17e

Interpro

IPR001210   Ribosomal_S17e        + More
IPR018273   Ribosomal_S17e_CS       
IPR036401   RPS17e-like_sf       

SUPFAM

SSF116820   SSF116820       

Gene 3D

1.10.60.20    

ProteinModelPortal

A0A194RGC2   A0A2A4JYV9   I4DMT0   A0A437BMI5   A0A1E1WIM7   I4DIP7   + More
Q5UAM5   D1LYL3   Q962R2   H9IW52   A0A194Q038   A7KCW4   G0ZEH0   A0A2H1WJA7   A0A212F614   E7DZ51   A0A0L7KZF2   A0A3G1T1N0   Q6F467   A0A067RHS7   A0A336LT32   A0A2P8ZCR8   Q4GXQ2   A0A2J7PYH7   A0A146M2H0   A5HMP2   A0A0A9Z7U0   D1M830   E0V9P6   A0A1D1XQ01   A0A1W4WSI4   Q6EUY4   E9ID71   E2BLN4   A0A195BWS5   E2AYV2   A0A151IEF9   D3KD00   A0A158NEI8   A0A146L5M2   Q6EUY6   Q6EUY5   A0A195FKI1   A0A026W1D6   D6WTW8   A0A1Y1MJZ0   A0A0J7L9E1   A0A3L8DCQ1   F4WRX8   A0A1B6MM82   A0A3L8DGT6   K7JAI6   V5H141   N6SYI9   Q0PXZ4   A0A1B6EUI2   A0A1B6HUL3   A0A1B6CKU2   A0A026WXT7   A0A1Q3FAB7   U5EXA4   B0WC62   J3JYN8   A0A0K8TPU7   U5EZC1   A0A1I8QF05   A0A0C9R7K5   A0A034WH81   A0A0A1WXJ6   A0A0K8V497   A0A0P6GVU4   A0A1L8DRY8   A0A0P4VME1   A0A0V0G4X0   R4G4C3   A6YPF7   A0A1B0D409   A0A0A0R236   B4MMS0   A0A3B0JVC5   Q29FA0   B4H1L6   A0A154NY80   A0A0N0BI35   A0A2A3EHS2   V9IHR8   A0A088ANM8   A0A1I8MSV1   A8C9W2   A0A224XZZ9   A0A1L8EF83   A0A0C9R6X9   A0A0M9A475   A0A1L8EFD0   A0A0L7REE3   A0A3B0J6C8   A0A0X7YAT6   A0A182IZ62   R4WND8   A0A0A0R243  

PDB

4V6W     E-value=3.44444e-27,     Score=295

KEGG

692719    K02962 small subunit ribosomal protein S17e | (RefSeq) RpS17; ribosomal protein S17

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0005622   GO:0015934   GO:0005216   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR10732  

Length:

86

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00114

Exp number, first 60 AAs:

0

Total prob of N-in:

0.46799

outside

1  -  86

 

 

Pi

192.342881

Theta

148.144169

Tajima's D

0.937812

CLR

0

CSRT

0.638918054097295

Interpretation

Uncertain