SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12457
Pre Gene Modal
BGIBMGA001487
Annotation
cuticular_protein_RR-2_motif_77_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.17 PlasmaMembrane   Reliability : 1.373
 

Sequence

CDS
ATGGTCGCCAAATTCGCAATCTTCTCCTGCCTGGTGGCTGCGGCGGCTGCTGTTGCCGTCCCCATTGTGCCAGTAGCTAAACTGGCTTACGCCGAACACGAAGCCCCCGCACACTATGACTTCGAATACTCCGTTCACGACGACCACAGCGGAGACATCAAGCAACAGAAGGAGTCCCGCGCCGGAGACGTCGTCCAGGGCTTCTACTCGCTGGTGCAACCCGACGGTGTCCACCGCATTGTCGAGTACACCGCCGACAACGAACACGGATTCAATGCTAACGTCCGCTACGAGGGACATCCTATCGCTCAGCCCGCCAAGATCGCTTACGCTGCTCCCGTACAAAACATCGCGTACGCCGCTCCCGTCCCCAAGCTCGCCTACTCTGCCCCTGTAACTAAACTAGCGTACCCAGGATCCATCACTAAAGTAGCCTACGCTCCAGCTCCAGTGACCTACGCCCAATCTCCTTTAACCAAGATTGCGTATCCAGCTCCCCTAGCCTACGCTCAGGCTCCGATCACCAAAGTCGCGTACGCACCTGCTCCAGTCGCCTACGCCTCGGCCCCTGTCGCCAAAGTCGCCTATAGCGCCCCCCTCGGACACGTCAGCTTCTCTTCCCCCGGCATTACCTACCAGCACTAA
Protein
MVAKFAIFSCLVAAAAAVAVPIVPVAKLAYAEHEAPAHYDFEYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQPDGVHRIVEYTADNEHGFNANVRYEGHPIAQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSPLTKIAYPAPLAYAQAPITKVAYAPAPVAYASAPVAKVAYSAPLGHVSFSSPGITYQH

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 19,         Likelihood:  0.953384
 
 
Length:
214
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
19.59458
Exp number, first 60 AAs:
19.45741
Total prob of N-in:
0.87639
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  26
outside
27  -  214
 
 

Population Genetic Test Statistics

Pi
180.281488
Theta
169.235865
Tajima's D
0.205294
CLR
7.19005
CSRT
0.429678516074196
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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