Gene

KWMTBOMO12451  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002361

Annotation

WD_repeat_domain_61_[Bombyx_mori]

Location

Bomo_Chr21(+):4278775-4288076      View in EpiBrowser

Full name

WD repeat-containing protein 61      

Location in the cell

Cytoplasmic   Reliability : 2.394

CDS

ATGCCGTCAAATACAATACATTCAATATTGTTAAAAAAGGAGAATGCTCACGAAGATCTGATATATGGATGCGCATGGGCAAATATTAACCATTCAACAGACTCTAAAGGTCCATCAAAGGATTACATAGTAACAGGAGGCTTAGATAATTTAGTAAAAGTTTGGTCATATGAGAATAATAAACTAGAGCTATTACACACCCTCGAAGGACATGAAATGCCTGTTGTATCAGTTGCTGTTAGTCCTGATGGAGAAACAATCGCAAGCACATCCCTGGACTCCTCACTTATCATATGGGATCTCTTAGATGGACAAAAAATACGAGAAATACAAACAGACAGTTCTGATATGTGGAAGATTGTGTTCTCACCTGATGGTAGCCAAGTAGCCACTGGAGGTCACACTGGAAAGGTGACTGTGTATGGAATAATCAATGGAACTGTGGATAAAGTGCTAGATACGAGGGGAAAGTTTATTATGTCTGTTGCCTGGAGCCCCGATGGTAGGTACATAGCGAGCGGCGCTGAAGGCGGTTCGGTTTACTTGTTCGACGTGAGCCAAGGGAAGATGCTGCACACGATAGAGGCCCACGCGCAGGCCGTCCGGAGCCTCGCGTTCTCACCCAAAACCAAACTCTTGGCATCGGCATCCAACGACGGCTACGTCAATGTTTACAATATCGAAAGCGCAGCGCTGCAGAATAAGCTGGACCACAAATGCTGGGCGGTCTCCGTGTGCTTCTCCCCCGATGGACAGAGAATGGCGACTTCGGCGGCGGACGGCAGCATCCGCGTCGTCCTACTTGAGGAGTTCCGTGTACTCCACACGTTCGAAGAGCACACACATATCGTTTGCGGTGTTCAGTTCAACGCTGACGGTTCCAAACTTGTATCAGTATCGAAAGACAAAAGTATAAATATTTACGAATGCCCTATCCCACCGAAGTCTGCGAAAAAAGTTAAAAAATAA

Protein

MPSNTIHSILLKKENAHEDLIYGCAWANINHSTDSKGPSKDYIVTGGLDNLVKVWSYENNKLELLHTLEGHEMPVVSVAVSPDGETIASTSLDSSLIIWDLLDGQKIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVYGIINGTVDKVLDTRGKFIMSVAWSPDGRYIASGAEGGSVYLFDVSQGKMLHTIEAHAQAVRSLAFSPKTKLLASASNDGYVNVYNIESAALQNKLDHKCWAVSVCFSPDGQRMATSAADGSIRVVLLEEFRVLHTFEEHTHIVCGVQFNADGSKLVSVSKDKSINIYECPIPPKSAKKVKK

Subunit

Component of the PAF1 complex, which at least consists of CDC73, PAF1, LEO1, CTR9, RTF1 and WDR61 (By similarity). The PAF1 complex interacts with PHF5A (By similarity).

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat  

Feature

chain  WD repeat-containing protein 61

Uniprot

Q2F639   H9IYM7   A0A2A4JXX2   A0A3S2NHW6   A0A2H1VQL1   A0A212FK05   + More
S4PE27   A0A437BM06   Q1HQ69   A0A2A4JZP6   A0A194Q4L5   A0A067R5U6   A0A194RKK4   A0A2J7RRT5   E0VS46   D6W8Z7   Q6P5M2   H9GAT7   A0A1B6GZ40   A0A1B6ILM5   A0A1W7RBK3   T1E3H4   J3SFN4   Q6PBD6   A0A1B6KVY2   A0A401T4T9   A0A0B8RVE4   A0A087ZP86   A0A2A3ESV6   A0A2J7RRT2   K4FYA1   A0A401P3V1   A0A1Y1KU25   A0A1L8H9K4   A0A1B6DAL1   A0A2R5LIL5   A0A0J7L764   A0A293MSW5   A0A1L8HI18   Q6GMD2   A0A131Y198   B7PVL7   E2AE03   A0A3P8Z7S8   E2BCD2   A0A1A8CT54   A0A1A8B2H4   B5XGQ3   A0A0K8R734   A0A154P9A6   A0A0P5GW06   K7IYX4   A0A0N8DXJ5   A0A1E1X4Y8   A0A1A8QNJ5   A0A1A8KVH9   A0A1A8PP23   A0A1A8FMT6   A0A224Z3W7   A0A131Z522   A0A2D0SF95   A0A3Q3G7J8   A0A3Q1GI04   A0A3B4Z3L2   A0A3Q1C5Z5   A0A3L8DVM2   A0A3Q3T1D7   A0A0P5MJT6   A0A0M9A4P1   E9HLY4   A0A1U7SAT1   A0A210Q443   A0A3Q3BTD9   A0A3Q4HMG4   I3K4X0   A0A3P8R411   A0A3P9BXX7   E9GRV9   A0A0P6H326   A0A2G9SC58   A0A3Q3BAT4   E3TF15   A0A3B4WKH4   A0A3B4VNQ9   A0A3S2PBW6   A0A3Q2PSY2   A0A3B5K8D2   A0A1A7WW93   A0A3P8SKN8   F4W5Y9   A0A3Q1JIG3   A0A3B3BGA7   A0A3B4FML8   A0A3B4EKP4   A0A151MA06   C1BM10   A0A151J7T0   A0A0C9QM06   A0A3P9PAV5   A0A146PZM7  

Pubmed

19121390    22118469    23622113    26354079    24845553    20566863    + More
18362917    19820115    21881562    26358130    23758969    23025625    30297745    25476704    23056606    28004739    27762356    20798317    25069045    20433749    20075255    28503490    28797301    26830274    30249741    21292972    28812685    25186727    20634964    21551351    21719571    29451363    22293439   

EMBL

DQ311233    ABD36178.1    BABH01037875    BABH01037876    NWSH01000372    PCG76871.1    + More
RSAL01000033    RVE51498.1    ODYU01003580    SOQ42524.1    AGBW02008159    OWR54087.1    GAIX01003366    JAA89194.1    RVE51497.1    DQ443183    ABF51272.1    PCG76872.1    KQ459585    KPI98350.1    KK852676    KDR18688.1    KQ460211    KPJ16506.1    NEVH01000598    PNF43549.1    DS235745    EEB16202.1    KQ971312    EEZ98418.1    BC062834    AAWZ02028868    GECZ01029698    GECZ01002073    JAS40071.1    JAS67696.1    GECU01019911    JAS87795.1    GDAY02002948    JAV48519.1    GAAZ01002955    JAA94988.1    JU176558    GBEX01003990    AFJ52081.1    JAI10570.1    BC059759    GEBQ01024593    JAT15384.1    BEZZ01001031    GCC37630.1    GBSH01003140    JAG65887.1    KZ288186    PBC34760.1    PNF43548.1    JX052889    AFK11117.1    BFAA01004410    GCB67798.1    GEZM01077646    JAV63215.1    CM004469    OCT92787.1    GEDC01014580    JAS22718.1    GGLE01005210    MBY09336.1    LBMM01000386    KMQ98638.1    GFWV01018868    MAA43596.1    CM004468    OCT95661.1    BC074136    GEFM01002533    JAP73263.1    ABJB010118749    ABJB010823789    DS800607    EEC10639.1    GL438827    EFN68236.1    GL447257    EFN86668.1    HADZ01017940    HAEA01003583    SBP81881.1    HADY01022426    HAEJ01001288    SBP60911.1    BT050222    ACI70023.1    GADI01007150    JAA66658.1    KQ434829    KZC07750.1    GDIQ01234962    JAK16763.1    GDIQ01082108    JAN12629.1    GFAC01004848    JAT94340.1    HAEH01012392    HAEI01015873    SBR94674.1    HAED01010814    HAEE01015599    SBR35649.1    HAEF01014830    HAEG01008931    SBR83165.1    HAEB01012907    HAEC01003362    SBQ59434.1    GFPF01013361    MAA24507.1    GEDV01002048    JAP86509.1    QOIP01000004    RLU24283.1    GDIQ01162690    JAK89035.1    KQ435758    KOX75789.1    GL732682    EFX67257.1    NEDP02005080    OWF43510.1    AERX01017855    AERX01017856    GL732560    EFX77845.1    GDIQ01025970    JAN68767.1    KV924900    PIO37749.1    GU588948    ADO28901.1    CM012442    RVE71547.1    HADW01008556    HADX01011572    SBP09956.1    GL887696    EGI70367.1    AKHW03006295    KYO21329.1    BT075639    ACO10063.1    KQ979639    KYN20063.1    GBYB01004574    JAG74341.1    GCES01137492    JAQ48830.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000027135    + More
UP000053240    UP000235965    UP000009046    UP000007266    UP000000437    UP000001646    UP000008143    UP000287033    UP000005203    UP000242457    UP000288216    UP000186698    UP000036403    UP000001555    UP000000311    UP000265140    UP000008237    UP000087266    UP000076502    UP000002358    UP000221080    UP000261660    UP000257200    UP000261400    UP000257160    UP000279307    UP000261640    UP000053105    UP000000305    UP000189705    UP000242188    UP000264840    UP000261580    UP000005207    UP000265100    UP000265160    UP000264800    UP000261360    UP000261420    UP000265000    UP000005226    UP000265080    UP000007755    UP000265040    UP000261560    UP000261460    UP000261440    UP000050525    UP000078492    UP000242638   

PRIDE

Q2F639    H9IYM7    Q1HQ69    Q6P5M2    Q6PBD6    B7PVL7    + More

Pfam

PF00400   WD40        + More
PF08662   eIF2A
PF00379   Chitin_bind_4

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR013979   TIF_beta_prop-like       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR020472   G-protein_beta_WD-40_rep       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR000618   Insect_cuticle       
IPR031311   CHIT_BIND_RR_consensus       
IPR011044   Quino_amine_DH_bsu       
IPR011045   N2O_reductase_N       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF50974   SSF50974       

Gene 3D

2.130.10.10    

ProteinModelPortal

Q2F639   H9IYM7   A0A2A4JXX2   A0A3S2NHW6   A0A2H1VQL1   A0A212FK05   + More
S4PE27   A0A437BM06   Q1HQ69   A0A2A4JZP6   A0A194Q4L5   A0A067R5U6   A0A194RKK4   A0A2J7RRT5   E0VS46   D6W8Z7   Q6P5M2   H9GAT7   A0A1B6GZ40   A0A1B6ILM5   A0A1W7RBK3   T1E3H4   J3SFN4   Q6PBD6   A0A1B6KVY2   A0A401T4T9   A0A0B8RVE4   A0A087ZP86   A0A2A3ESV6   A0A2J7RRT2   K4FYA1   A0A401P3V1   A0A1Y1KU25   A0A1L8H9K4   A0A1B6DAL1   A0A2R5LIL5   A0A0J7L764   A0A293MSW5   A0A1L8HI18   Q6GMD2   A0A131Y198   B7PVL7   E2AE03   A0A3P8Z7S8   E2BCD2   A0A1A8CT54   A0A1A8B2H4   B5XGQ3   A0A0K8R734   A0A154P9A6   A0A0P5GW06   K7IYX4   A0A0N8DXJ5   A0A1E1X4Y8   A0A1A8QNJ5   A0A1A8KVH9   A0A1A8PP23   A0A1A8FMT6   A0A224Z3W7   A0A131Z522   A0A2D0SF95   A0A3Q3G7J8   A0A3Q1GI04   A0A3B4Z3L2   A0A3Q1C5Z5   A0A3L8DVM2   A0A3Q3T1D7   A0A0P5MJT6   A0A0M9A4P1   E9HLY4   A0A1U7SAT1   A0A210Q443   A0A3Q3BTD9   A0A3Q4HMG4   I3K4X0   A0A3P8R411   A0A3P9BXX7   E9GRV9   A0A0P6H326   A0A2G9SC58   A0A3Q3BAT4   E3TF15   A0A3B4WKH4   A0A3B4VNQ9   A0A3S2PBW6   A0A3Q2PSY2   A0A3B5K8D2   A0A1A7WW93   A0A3P8SKN8   F4W5Y9   A0A3Q1JIG3   A0A3B3BGA7   A0A3B4FML8   A0A3B4EKP4   A0A151MA06   C1BM10   A0A151J7T0   A0A0C9QM06   A0A3P9PAV5   A0A146PZM7  

PDB

3OW8     E-value=3.74654e-65,     Score=629

KEGG

692852    K12602 WD repeat-containing protein 61 | (RefSeq) WD repeat domain 61

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0042302   GO:0016905   GO:0032968   GO:0005634   GO:0016593   GO:0005737   GO:0055087   GO:0045944   GO:0035327   GO:0045638   GO:0080182   GO:2001162   GO:0005829   GO:0051571   GO:0016021   GO:0005515   GO:0000166   GO:0046872   GO:0005622   GO:0015934   GO:0005216   GO:0045211   GO:0005975   GO:0004553  

Length:

322

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00232

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01789

outside

1  -  322

 

 

Pi

17.67568

Theta

147.226714

Tajima's D

-0.989914

CLR

0.457966

CSRT

0.135993200339983

Interpretation

Uncertain