Gene

KWMTBOMO12450  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002361

Annotation

WD_repeat_domain_61_[Bombyx_mori]

Location

Bomo_Chr21(+):4274745-4277790      View in EpiBrowser

Full name

WD repeat-containing protein 61      

Location in the cell

Cytoplasmic   Reliability : 2.73

CDS

ATGTCCATTACAACTCTGTATTATTTACAATTGAAAAAAGAAAATGCACACGAGGATGCAATTTGGTGTTGTACTTGGAGTAGGATAGAACCCGAGAAACCGAAAGAAGGCGAAAATGATACAGAAAACGCAGAGGAATTACAGGACTCTCAGAAGGAATCCGCAGAAAATTACATTATAACCGGTGGCTTGGATGACTACATAAAAGTGTGGCAATTAGATAACGGGAAACTAGAAATTAAGCACCAGCTCGAAGGACATTCTTTAGGAGTGATTTCAGTTGCGGTTAGCCCCGATGGGAAAACCTTAGCAAGCAGCTCACAGGATTCATCATTGATACTATGGAATTTGATCTCGGGTGAAAAACTAAAAATGTTTGAAACTGGACTCACCGACGTTTGGACTTTAGACTTTTCACCAGATGGAAAACATGTTATTTCTGGAAGCAATGCAGGGAAAATACTCATTTTTGGAGTTGAAAGTGGTAAACAGGAGCAAGTATTGGACACCAGGGGGAAATTCACTCTTAGTGTGGCTTACAGCCCTGATGGGAAATACATTGCCAGCGGAGCCTTAGATGGAATTATCAATATCTTTGATGTGGCTCAAGGAAAATTAGTACATACCCTTGAAGGACATGCAATGTCTATTAGAAGTTTATGTTTCTCTCCAGATTCACAGCTTTTATTGACTGGCTCGGATGATGGTCATATGAAACTTTATGATGTAGTACATGCTAATTTAGCAGGTACATTATCTGGCCATGCATCTTGGGTGCTGTCAGTAGCATTCTCTCCAGATGGAAAGCGTTTTGTATCGGGTAGTGCAGATCGAACGGTGCGTGTGTGGGACTTAGATAGCATGCAATGCCAACATACGTTCAAAGAACATAATGATCAGGTTTGGGGAGTGAAATTTAATGCTGAAAGTAATAAAATCATATCAGTATCTGAAGATAAGTGTGTGAACATTTATGATTGTCCTCTATAG

Protein

MSITTLYYLQLKKENAHEDAIWCCTWSRIEPEKPKEGENDTENAEELQDSQKESAENYIITGGLDDYIKVWQLDNGKLEIKHQLEGHSLGVISVAVSPDGKTLASSSQDSSLILWNLISGEKLKMFETGLTDVWTLDFSPDGKHVISGSNAGKILIFGVESGKQEQVLDTRGKFTLSVAYSPDGKYIASGALDGIINIFDVAQGKLVHTLEGHAMSIRSLCFSPDSQLLLTGSDDGHMKLYDVVHANLAGTLSGHASWVLSVAFSPDGKRFVSGSADRTVRVWDLDSMQCQHTFKEHNDQVWGVKFNAESNKIISVSEDKCVNIYDCPL

Subunit

Component of the PAF1 complex, which at least consists of CDC73, PAF1, LEO1, CTR9, RTF1 and WDR61 (By similarity). The PAF1 complex interacts with PHF5A (By similarity).

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat  

Feature

chain  WD repeat-containing protein 61

Uniprot

Q1HQ69   A0A437BM06   S4PE27   A0A2A4JZP6   A0A194Q4L5   A0A212FK05   + More
A0A2H1VQL1   A0A194RKK4   D6W8Z7   A0A1B6GZ40   A0A1B6ILM5   A0A067R5U6   A0A1B6KVY2   A0A2J7RRT5   A0A1Y1KU25   E0VS46   A0A0J7L764   E2AE03   K7IYX4   A0A3L8DVM2   A0A154P9A6   A0A158NJD8   A0A151JYV3   A0A151HYB1   A0A1B6DAL1   A0A151X4U0   A0A0L0CE52   E2BCD2   A0A1I8N6A4   A0A087ZP86   F4W5Y9   A0A2A3ESV6   A0A1I8PVC0   A0A2J7RRT2   W8BKF7   A0A151J7T0   A0A0A1WJP2   A0A026W3N9   A0A0C9QM06   A0A1B0A333   Q9BMG5   Q8T4T8   A0A0K8VF97   A0A195CCR2   A0A034VZY8   A0A1B0FGC8   A0A182XZ88   A0A182P3K5   Q8T4T9   A0A1B0DHE7   A0A182RFN0   A0A1A9VGD4   A0A182JXW0   B4M690   B4NFM0   Q9BMG4   B3M1E8   A0A182WIR2   A0A182KRS3   A0A182X6D6   Q5TX28   A0A182I3P2   A0A182Q782   B4KCG5   A0A1A9WW75   A0A1A9XVN0   A0A182UKH6   A0A0M9A4P1   A0A1B0BYJ9   A0A182VJZ0   A0A182MA08   A0A0P4VRH0   W5JDK1   A0A3B0K621   T1HEG6   N6UKW9   A0A182NHL9   A0A0M4EQ92   A0A182FFW5   A0A2M4AUS4   A0A1W4VMI4   A0A2M4AUK7   B4JSK8   A0A1L8DG57   A0A310STP3   Q29B68   B4PVI3   B4GZ11   A0A1B0GGT2   A0A0L7R2E1   A0A0P5MJT6   Q9XZ19   A0A0N8DXJ5   E9GRV9   A0A0P5GW06   Q6P5M2   E9HLY4   B4QVV7   A0A182GBS2  

Pubmed

23622113    26354079    22118469    18362917    19820115    24845553    + More
28004739    20566863    20798317    20075255    30249741    21347285    26108605    25315136    21719571    24495485    25830018    24508170    17510324    25348373    25244985    17994087    20966253    12364791    14747013    17210077    27129103    20920257    23761445    23537049    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21292972    26483478   

EMBL

DQ443183    ABF51272.1    RSAL01000033    RVE51497.1    GAIX01003366    JAA89194.1    + More
NWSH01000372    PCG76872.1    KQ459585    KPI98350.1    AGBW02008159    OWR54087.1    ODYU01003580    SOQ42524.1    KQ460211    KPJ16506.1    KQ971312    EEZ98418.1    GECZ01029698    GECZ01002073    JAS40071.1    JAS67696.1    GECU01019911    JAS87795.1    KK852676    KDR18688.1    GEBQ01024593    JAT15384.1    NEVH01000598    PNF43549.1    GEZM01077646    JAV63215.1    DS235745    EEB16202.1    LBMM01000386    KMQ98638.1    GL438827    EFN68236.1    QOIP01000004    RLU24283.1    KQ434829    KZC07750.1    ADTU01017619    KQ981505    KYN40925.1    KQ976729    KYM76489.1    GEDC01014580    JAS22718.1    KQ982543    KYQ55381.1    JRES01000501    KNC30688.1    GL447257    EFN86668.1    GL887696    EGI70367.1    KZ288186    PBC34760.1    PNF43548.1    GAMC01004750    JAC01806.1    KQ979639    KYN20063.1    GBXI01015215    JAC99076.1    KK107453    EZA50672.1    GBYB01004574    JAG74341.1    AF326339    CH477330    AAK14330.1    EAT43383.1    AY064077    AAL85578.1    GDHF01014802    JAI37512.1    KQ977935    KYM98592.1    GAKP01011512    JAC47440.1    CCAG010019162    AY064076    AAL85577.1    AJVK01061020    CH940652    EDW59166.2    CH964251    EDW83087.2    AF326340    AAK14331.1    CH902617    EDV42175.1    AAAB01008807    EAL41742.3    APCN01000215    AXCN02000593    CH933806    EDW14784.2    KQ435758    KOX75789.1    JXJN01022685    AXCM01000215    GDKW01000942    JAI55653.1    ADMH02001692    ETN61403.1    OUUW01000005    SPP80431.1    ACPB03022058    APGK01029197    KB740727    KB631815    ENN79332.1    ERL86419.1    CP012526    ALC46460.1    GGFK01011200    MBW44521.1    GGFK01011148    MBW44469.1    CH916373    EDV94748.1    GFDF01008646    JAV05438.1    KQ760539    OAD59981.1    CM000070    EAL27130.3    CM000160    EDW96756.1    CH479198    EDW28029.1    AJWK01000721    KQ414666    KOC65045.1    GDIQ01162690    JAK89035.1    AF132174    AE014297    AAD34762.1    AAF54480.1    GDIQ01082108    JAN12629.1    GL732560    EFX77845.1    GDIQ01234962    JAK16763.1    BC062834    GL732682    EFX67257.1    CM000364    EDX13537.1    JXUM01008943    KQ560272    KXJ83403.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000027135    UP000235965    UP000009046    UP000036403    UP000000311    UP000002358    UP000279307    UP000076502    UP000005205    UP000078541    UP000078540    UP000075809    UP000037069    UP000008237    UP000095301    UP000005203    UP000007755    UP000242457    UP000095300    UP000078492    UP000053097    UP000092445    UP000008820    UP000078542    UP000092444    UP000076408    UP000075885    UP000092462    UP000075900    UP000078200    UP000075881    UP000008792    UP000007798    UP000007801    UP000075920    UP000075882    UP000076407    UP000007062    UP000075840    UP000075886    UP000009192    UP000091820    UP000092443    UP000075902    UP000053105    UP000092460    UP000075903    UP000075883    UP000000673    UP000268350    UP000015103    UP000019118    UP000030742    UP000075884    UP000092553    UP000069272    UP000192221    UP000001070    UP000001819    UP000002282    UP000008744    UP000092461    UP000053825    UP000000803    UP000000305    UP000000437    UP000000304    UP000069940    UP000249989   

PRIDE

Q1HQ69    Q9XZ19    Q6P5M2   

Pfam

PF00400   WD40        + More
PF00379   Chitin_bind_4

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR000618   Insect_cuticle       
IPR031311   CHIT_BIND_RR_consensus       
IPR011044   Quino_amine_DH_bsu       
IPR011045   N2O_reductase_N       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF50974   SSF50974       

Gene 3D

2.130.10.10    

ProteinModelPortal

Q1HQ69   A0A437BM06   S4PE27   A0A2A4JZP6   A0A194Q4L5   A0A212FK05   + More
A0A2H1VQL1   A0A194RKK4   D6W8Z7   A0A1B6GZ40   A0A1B6ILM5   A0A067R5U6   A0A1B6KVY2   A0A2J7RRT5   A0A1Y1KU25   E0VS46   A0A0J7L764   E2AE03   K7IYX4   A0A3L8DVM2   A0A154P9A6   A0A158NJD8   A0A151JYV3   A0A151HYB1   A0A1B6DAL1   A0A151X4U0   A0A0L0CE52   E2BCD2   A0A1I8N6A4   A0A087ZP86   F4W5Y9   A0A2A3ESV6   A0A1I8PVC0   A0A2J7RRT2   W8BKF7   A0A151J7T0   A0A0A1WJP2   A0A026W3N9   A0A0C9QM06   A0A1B0A333   Q9BMG5   Q8T4T8   A0A0K8VF97   A0A195CCR2   A0A034VZY8   A0A1B0FGC8   A0A182XZ88   A0A182P3K5   Q8T4T9   A0A1B0DHE7   A0A182RFN0   A0A1A9VGD4   A0A182JXW0   B4M690   B4NFM0   Q9BMG4   B3M1E8   A0A182WIR2   A0A182KRS3   A0A182X6D6   Q5TX28   A0A182I3P2   A0A182Q782   B4KCG5   A0A1A9WW75   A0A1A9XVN0   A0A182UKH6   A0A0M9A4P1   A0A1B0BYJ9   A0A182VJZ0   A0A182MA08   A0A0P4VRH0   W5JDK1   A0A3B0K621   T1HEG6   N6UKW9   A0A182NHL9   A0A0M4EQ92   A0A182FFW5   A0A2M4AUS4   A0A1W4VMI4   A0A2M4AUK7   B4JSK8   A0A1L8DG57   A0A310STP3   Q29B68   B4PVI3   B4GZ11   A0A1B0GGT2   A0A0L7R2E1   A0A0P5MJT6   Q9XZ19   A0A0N8DXJ5   E9GRV9   A0A0P5GW06   Q6P5M2   E9HLY4   B4QVV7   A0A182GBS2  

PDB

3OW8     E-value=1.20887e-95,     Score=892

KEGG

732907    K12602 WD repeat-containing protein 61 | (RefSeq) WD repeat domain 61

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0042302   GO:0016905   GO:0016021   GO:0003743   GO:0032968   GO:0005634   GO:0016593   GO:0005737   GO:0055087   GO:0045944   GO:0035327   GO:0005515   GO:0000166   GO:0046872   GO:0005622   GO:0015934   GO:0005216   GO:0045211   GO:0005975   GO:0004553  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06236

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01989

outside

1  -  329

 

 

Pi

223.039857

Theta

199.942135

Tajima's D

0.322079

CLR

0

CSRT

0.465176741162942

Interpretation

Uncertain