Silkworm Genome Informatics Database

Gene

KWMTBOMO12447 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002359

Annotation

putative_secretory_carrier-associated_membrane_protein_[Danaus_plexippus]

Location

Bomo_Chr21(+):4248405-4250500 View in EpiBrowser

Full name

Secretory carrier-associated membrane protein

Location in the cell

Nuclear Reliability : 2.845

CDS

ATGTCTAAATTTGAAGACAATCCGTTTAGTGACCCAACCATAGACAATCCTTTTGCAGACCCGTCGGTTCAGCAAGTTGCACGGAGTACAAACAATGCTACACGTGGTTTAGAAGACTACAATCCTTTCGACGGCCAACAAAATGTTAATCAATCCACGCCTCAGCAACAGCAACCAGCACAACCGGCAATCATGCAGGCTGTGTCACCACCAGCCAGCAGCCAGTACACAAGACCCGCACAGCAGGCTTCAGCGCCTCCACCAAATTTCACAACTGCTGATTTTCAGGTATGTCTATACTAA

Protein

MSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPFDGQQNVNQSTPQQQQPAQPAIMQAVSPPASSQYTRPAQQASAPPPNFTTADFQVCLY

Similarity

Belongs to the SCAMP family.

Uniprot

H9IYM5 A0A212F2D0 A0A2A4JZ08 A0A2H1WBI9 A0A1E1WCG5 A0A0L7KP76 + More
A0A0N1PFH9 A0A194PZ80 T1HKX5 D6W733

Pubmed

19121390 22118469 26227816 26354079 18362917 19820115 + More

EMBL

BABH01037876 BABH01037877 BABH01037878 AGBW02010762 OWR47886.1 NWSH01000372 + More
PCG76874.1 ODYU01007252 SOQ49864.1 GDQN01006503 GDQN01001452 JAT84551.1 JAT89602.1 JTDY01007833 KOB64910.1 KQ461006 KPJ10003.1 KQ459585 KPI98348.1 ACPB03016752 KQ971307 EFA11500.1

Proteomes

UP000005204 UP000007151 UP000218220 UP000037510 UP000053240 UP000053268 + More
UP000015103 UP000007266

PRIDE

H9IYM5

Pfam

PF13359 DDE_Tnp_4 + More
PF04144 SCAMP

Interpro

IPR007273 SCAMP + More
IPR027806 HARBI1_dom

ProteinModelPortal

H9IYM5 A0A212F2D0 A0A2A4JZ08 A0A2H1WBI9 A0A1E1WCG5 A0A0L7KP76 + More
A0A0N1PFH9 A0A194PZ80 T1HKX5 D6W733

KEGG

101740922 K19995 secretory carrier-associated membrane protein | (RefSeq) secretory carrier-associated membran

GO

GO:0016021 GO:0015031 GO:0005794 GO:0032588 GO:0000139 GO:0055038

PANTHER

PTHR10687

Subcellular location

Membrane

Length:

100

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10835

outside

1 - 100

Pi

140.352892

Theta

119.863254

Tajima's D

-0.146763

CLR

0

CSRT

0.334333283335833

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics