Silkworm Genome Informatics Database

Gene

KWMTBOMO12434

Pre Gene Modal

BGIBMGA012449

Annotation

PREDICTED:_protein_groucho-like_isoform_X9_[Bombyx_mori]

Location

Bomo_Chr21(+):3321881-3333363 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.238

CDS

ATGTATCCGTCTGCTACGCGGCACCCAGCGGCTGCGGTTCGGGGACCCCAACCGCCTGCTGGTCCGATTAAATTTACAATTGCGGACACATTAGAACGTATAAAAGAAGAATTTAACTTTTTACAAGCTCAATATCACACACTTAAACTTGAATGTGAAAAATTGGCCAGTGAGAAGACTGAAATGCAGAGGCATTATGTTATGTATTATGAAATGTCTTATGGCCTTAATGTGGAAATGCACAAGCAGACGGAAATAGCGAAAAGGCTAAGTGCTATAATTGGACAGGTTCTACCCTTCCTCGCCCAAGAACACCAGCAGCAGGTAGCTTCGGCTGTGGAGCGTGCCAAACAGGTGACAATGTCGGAACTCAATGCTATTATAGGGCAACAGATCCACGCGACGGCTGGCTTGTCGCACGGCGTGGGGGGCGCGGGCGGCTTGTTGGGGGCGGGGGGGCTATTGTTCGCTCCCGGCGCCGGCCCGCAGCCGCCCCCGCATCTACCGCCGCCCGCGCATAAAGTAGAGCTTCCACCTCCTGCCGACATCAAACCCCCAGTTCTGCCCGGGGGATCGGCGTCTTCTCAACTGATGTCAGGGCAGCCGCCCCCGCGGGACGACGGTCATTCTTCAAGATCTATGCCCTCGAGACGTTCAGTGTCGCCACACGAGAGAGAACAGAAATACAGGCCCAGGTCTCCAGTTGAGCCCGAAGCTCTGGACGCCAAACGCAGAAAAGAGGAGAAGGTATTCAGCCATGACAGCGACGCTGAGAAGAGCGATCAAGACCTTGTCGTGGACGTGGCCAACGAGGAAGAAAGAGCATCACCGAATGCGAGAACAGAGGGAGGGGAGAGAGCAGAGAACGGCCCCAGGCCCCCGTCCAGATCAGGATCTTCGTCCAGTAGATCGACGCCTAAGAGCTCCAAAGATGAGAAACCTGGTACTCCGGGAGCAAAGTTGCCCCGGGCGCCCACCCCAACCGGTCCCGGACGTGGCTACGGCTTCCCCGGTTACCCTGGCTACAGACCCCCTCATCCGTATGAGACGCCGCACCATAGAACCAATGGTGTTGCTCCAGCGAAACCGTAA

Protein

MYPSATRHPAAAVRGPQPPAGPIKFTIADTLERIKEEFNFLQAQYHTLKLECEKLASEKTEMQRHYVMYYEMSYGLNVEMHKQTEIAKRLSAIIGQVLPFLAQEHQQQVASAVERAKQVTMSELNAIIGQQIHATAGLSHGVGGAGGLLGAGGLLFAPGAGPQPPPHLPPPAHKVELPPPADIKPPVLPGGSASSQLMSGQPPPRDDGHSSRSMPSRRSVSPHEREQKYRPRSPVEPEALDAKRRKEEKVFSHDSDAEKSDQDLVVDVANEEERASPNARTEGGERAENGPRPPSRSGSSSSRSTPKSSKDEKPGTPGAKLPRAPTPTGPGRGYGFPGYPGYRPPHPYETPHHRTNGVAPAKP

Uniprot

A0A2H1VML5 A0A3S2NC38 H9JSD8 A0A2A4JFW2 A0A2A4JGQ6 A0A2A4JF60 + More
A0A194Q013 A0A2A4JGT2 A0A2A4JFK7 A0A2A4JGR0 A0A0R3NI67 A6NIY7 Q07G19 A0A2J8WPJ4 A0A2J8MRK1 Q5JSY7 G3TVD8 F6ZMP4 D2JPI7

Pubmed

19121390 26354079 15632085 17994087 15164053 18669648 + More
19413330 19608861 23186163 24275569 20431018

EMBL

ODYU01003365 SOQ42036.1 RSAL01000243 RVE43618.1 BABH01033822 BABH01033823 + More
BABH01033824 NWSH01001640 PCG70598.1 PCG70600.1 PCG70601.1 KQ459585 KPI98334.1 PCG70602.1 PCG70599.1 PCG70603.1 CM000070 KRT00644.1 AK302709 BAG63931.1 CR848617 CAL49370.1 NDHI03003383 PNJ71667.1 NBAG03000246 PNI62151.1 AL353813 AL358975 AL445252 AAMC01067312 AAMC01067313 AAMC01067314 AAMC01067315 AAMC01067316 GU014560 ACZ80606.1

Proteomes

UP000283053 UP000005204 UP000218220 UP000053268 UP000001819 UP000005640 + More
UP000007646 UP000008143

PRIDE

H9JSD8 A6NIY7 Q5JSY7

Pfam

PF03920 TLE_N + More
PF00400 WD40

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR009146   Groucho_enhance
IPR036322   WD40_repeat_dom_sf
IPR019775   WD40_repeat_CS
IPR005617   Groucho/TLE_N

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

A0A2H1VML5 A0A3S2NC38 H9JSD8 A0A2A4JFW2 A0A2A4JGQ6 A0A2A4JF60 + More
A0A194Q013 A0A2A4JGT2 A0A2A4JFK7 A0A2A4JGR0 A0A0R3NI67 A6NIY7 Q07G19 A0A2J8WPJ4 A0A2J8MRK1 Q5JSY7 G3TVD8 F6ZMP4 D2JPI7

PDB

4OM3 E-value=6.08761e-42, Score=429

KEGG

101743676 K04497 groucho | (RefSeq) protein groucho-like

GO

GO:0006355 GO:0005634 GO:0070491 GO:0090090 GO:0005667 GO:0003714 GO:0005515 GO:0005840 GO:0006412 GO:0005622 GO:0015934 GO:0005216 GO:0016021 GO:0045211 GO:0005975 GO:0004553

PANTHER

PTHR10814

Length:

363

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.5487

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08279

outside

1 - 363

Pi

154.945201

Theta

177.308888

Tajima's D

-0.951954

CLR

2.236489

CSRT

0.148792560371981

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics