Gene

KWMTBOMO12429

Pre Gene Modal

BGIBMGA012413

Annotation

PREDICTED:_SKI_family_transcriptional_corepressor_1_homolog-B_[Bombyx_mori]

Location

Bomo_Chr21(-):3127472-3154921      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.316

CDS

ATGGAGGCTACAAACCTAGCGATCTCACCGCGAGAGACCCTCAAGCCCAGAGCCGAGCACAAAACGCTGCAGATGAATAGTAAACCTAATCAAGTCAGTACGGTCCTGCTTTACGGCGTGCCCATAGTCTCCTTAGTGATCGAAGGCATAGAACGGCTTTGCCTAGCCCAGATCTCGAATACCCTGCTCAAACAATTTTCGTACAACGAGATCCACAATCGGCGAGTCGCACTGGGTATCACCTGTGTCCAATGCACTCCAGTGCAACTAGAGATATTACGAAGAGCTGGAGCGATGCCGGTCTCATCTCGGCGTTGTGGAATGATAACCCGCCGGGAAGCAGAGAGACTGTGCAAGTCGTTTTTAGGAGACAACGCTCCCCCGCGACTCCCTGATGACTTCGCTTTCGCTGTCCACCACGAGTGCGCTTGGGGCTGCCGCGGTGCATTTTTGCCGGCAAGGTACAACTCGTCACGCGCTAAATGCATCAAATGCGCATACTGCGGTCTCTTCTTTTCACCGAACAAGTTTATTTTCCACTCGCATCGGGTCGGTCCCGGAGATAAGTACGTGCAACCCGACGCCGCGAACTTTAATTCGTGGAGGCGGCATATGAAGCTCAGCGGAAGCCCACCAGACGAAGTGGTACACGCTTGGGAAGATGTCAAAGCTATGTTTAATGGGGGCACCAGGAAGAGAATGCTGTCTGCAGCTAGGAGAGTGTTCGTTCGCAGGCCGGAATCTGATAGCAGCAACGAAGCCAAAAGGCCGACAGTCAGTCCACCAAGCGCTCATGCTCCAGTGCCTAGACTAGCTGACTACGTCTGGGGAGCCAGACTGCCCCTCCCTTACGCCATACCTTGGCTGAAACCCACACTGTGGTCGCCAGGAGCTCTGACGGCTTTAAGCAGCGTTGGTCCCATGGAGGAGCCACGGGCGTTTCGACCAGTGCGTCGACTTGAATCACCACAGCTGTCCCCCGCTAGATCACCCGTTAGGTCTCCAAATAGGTCGCCGGTGCACACATCGCCGAGCCGCAGCCGATCGCCGGTCCGGACTCCGCTGCGTTCTCCGGAGTCCCCGAAGAGCGACCGAGACAGTGACGAAAGCGTCGACATCGAAACCACTGAAGATGACCAGCAGAGGAACGTGCAATGCGCATGGCCATGTCGCAGTGCTCCTACTCCGCGTCCAGAAGAGTCCTGGCCAACGCTGGTGCCGAAGATCGAGAGAGATGAAGAGCCAAGGGAGCCGTGGAGACTGCCCGACTTGCGACCATCACTTCACTACATGCACGACCGTGAAGTTGACAATTGCGTGGCGTGTGTAGCACCATTACCTCTCCTTCCGCCACCGGCACCAGCGCAGCATTAG

Protein

MEATNLAISPRETLKPRAEHKTLQMNSKPNQVSTVLLYGVPIVSLVIEGIERLCLAQISNTLLKQFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPVSSRRCGMITRREAERLCKSFLGDNAPPRLPDDFAFAVHHECAWGCRGAFLPARYNSSRAKCIKCAYCGLFFSPNKFIFHSHRVGPGDKYVQPDAANFNSWRRHMKLSGSPPDEVVHAWEDVKAMFNGGTRKRMLSAARRVFVRRPESDSSNEAKRPTVSPPSAHAPVPRLADYVWGARLPLPYAIPWLKPTLWSPGALTALSSVGPMEEPRAFRPVRRLESPQLSPARSPVRSPNRSPVHTSPSRSRSPVRTPLRSPESPKSDRDSDESVDIETTEDDQQRNVQCAWPCRSAPTPRPEESWPTLVPKIERDEEPREPWRLPDLRPSLHYMHDREVDNCVACVAPLPLLPPPAPAQH

Uniprot

A0A2A4K2U9   A0A437AZH1   H9JSA3   A0A194PUN3   A0A212FIH8   A0A2H1WC71   + More
A0A194R9W3   E9ID76   E2AYU6   A0A195BZT5   D6W867   F4WRX2   A0A151XIY2   A0A026WYF9   A0A088AFT1   T1H2T0   A0A0L7RET9   A0A1B0CLD1   A0A195BUV3   A0A158NEJ1   A0A3L8DHU0   A0A195EN64   A0A195FLQ6   A0A067RUA0   A0A336K8P3  

Pubmed

19121390    26354079    22118469    21282665    20798317    18362917    + More
19820115    21719571    24508170    21347285    30249741    24845553   

EMBL

NWSH01000256    PCG77972.1    RSAL01000243    RVE43616.1    BABH01033811    KQ459591    + More
KPI97116.1    AGBW02008386    OWR53531.1    ODYU01007685    SOQ50685.1    KQ460473    KPJ14427.1    GL762454    EFZ21341.1    GL444002    EFN61391.1    KQ978501    KYM93423.1    KQ971307    EFA11194.2    GL888292    EGI63129.1    KQ982080    KYQ60339.1    KK107064    EZA60878.1    CAQQ02005039    KQ414609    KOC69340.1    AJWK01017091    KQ976401    KYM92399.1    ADTU01013464    ADTU01013465    QOIP01000008    RLU19408.1    KQ978625    KYN29606.1    KQ981490    KYN41182.1    KK852463    KDR23419.1    UFQS01000204    UFQT01000204    SSX01304.1    SSX21684.1   

Proteomes

UP000218220    UP000283053    UP000005204    UP000053268    UP000007151    UP000053240    + More
UP000000311    UP000078542    UP000007266    UP000007755    UP000075809    UP000053097    UP000005203    UP000015102    UP000053825    UP000092461    UP000078540    UP000005205    UP000279307    UP000078492    UP000078541    UP000027135   

PRIDE

H9JSA3   

Pfam

PF02437   Ski_Sno        + More
PF08782   c-SKI_SMAD_bind

Interpro

IPR037000   Ski_DNA-bd_sf        + More
IPR003380   SKI/SNO/DAC       
IPR014890   c-SKI_SMAD4-bd_dom       
IPR023216   Tscrpt_reg_SKI_SnoN       
IPR009061   DNA-bd_dom_put_sf       
IPR010919   SAND-like_dom_sf       

SUPFAM

SSF46955   SSF46955        + More
SSF63763   SSF63763       

Gene 3D

3.10.260.20     3.10.390.10    

ProteinModelPortal

A0A2A4K2U9   A0A437AZH1   H9JSA3   A0A194PUN3   A0A212FIH8   A0A2H1WC71   + More
A0A194R9W3   E9ID76   E2AYU6   A0A195BZT5   D6W867   F4WRX2   A0A151XIY2   A0A026WYF9   A0A088AFT1   T1H2T0   A0A0L7RET9   A0A1B0CLD1   A0A195BUV3   A0A158NEJ1   A0A3L8DHU0   A0A195EN64   A0A195FLQ6   A0A067RUA0   A0A336K8P3  

PDB

1SBX     E-value=9.66774e-14,     Score=187

KEGG

101746140    no KO assigned | (RefSeq) SKI family transcriptional corepressor 1 homolog-B

GO

GO:0046332   GO:0003677   GO:0030512   GO:0048666   GO:0030514   GO:0045596   GO:0005840   GO:0006412   GO:0005622   GO:0015934   GO:0005216   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR10005  

Length:

457

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.81599

Exp number, first 60 AAs:

0.76702

Total prob of N-in:

0.03560

outside

1  -  457

 

 

Pi

210.914128

Theta

160.013751

Tajima's D

0.795838

CLR

0.528897

CSRT

0.599670016499175

Interpretation

Uncertain