Gene

KWMTBOMO12428  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012414

Annotation

60S_ribosomal_protein_L17_[Bombyx_mori]

Location

Bomo_Chr21(-):3119492-3123821      View in EpiBrowser

Full name

60S ribosomal protein L17      

Location in the cell

Nuclear   Reliability : 3.218

CDS

ATGGGTCGTTACTCTCGGGAGCCGGATAACCCTGCGAAATCATGCAAAGCGCGTGGTTCAAACCTCCGTGTTCACTTTAAGAACACATATGAGACCGCAATGGCAATCAGAAAGATGCCGCTCCGTCGTGCTGTTCGTTACCTCAAAAACGTGATTGAAAAGAAAGAGTGTATTCCATTCCGTCGCTTCAACGGCGGCGTTGGTCGCTGTGCTCAAGCAAAGCAGTTTGGCACAACACAGGGTCGCTGGCCCAAGAAATCCGCCGAATTCCTCTTGCAGTTATTGAGGAACGCTGAATCAAACGCTGACAACAAAACTTTGGACGTTGACAGGCTAGTTATCGACCACATTCAGGTAAATCGCGCGCCCTGCCTACGCAGACGTACATACCGTGCTCACGGTCGCATCAACCCCTACATGTCGTCTCCCTGCCACATCGAAGTATGTCTCAGCGAACGCGAAGATGCTGTCGCTAGGGTAGCCCCTACTGATGATGCCCCAGCGAAGAAAAAGCTTTCCAAGAAAAAGCTTGCGCGTCAAAAGGAGAAGATGATGAGGGAATAG

Protein

MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSKKKLARQKEKMMRE

Similarity

Belongs to the universal ribosomal protein uL22 family.

Keywords

Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L17

Uniprot

Q5UAS2   I4DLZ4   A0A194R9B0   I4DIG9   A0A212FIH1   Q5MGD1   + More
E7DYZ9   A0A437B0D7   A0A2H1WTK7   D1LYK9   A0A2A4K2R6   A0A3G1T1I3   G0ZEB6   A0A224XXR3   A0A023FB83   R4G8L6   A0A109NNV3   A0A0A9YAU7   E0VJH3   A0A0K8SKC4   A0A146LI29   A0A1D2NBP6   A0A0P4VLJ5   A0A067RA17   A0A2J7RSN3   A8CAG3   A0A158N8X5   A0A151HYR0   A0A158N8X7   A0A151IWZ6   A0A195CB07   A0A1B6CJ16   A0A1D2MIG6   A0A232EWM9   E2ABF3   A0A026W6Q9   B4JKY7   R4WNJ5   A0A1L8EFD7   A0A1L8DS55   K7IWP5   A0A182JMJ1   A0A182RXI8   F4W9J5   A0A1L8EEZ8   T1PF74   A0A1Q3FBT6   A0A1I8PCB2   Q56FE5   U5EZC2   B0X7V4   B4M6M3   B4N1G4   A0A0M5JAI6   A0A2Z6YX33   Q5MIR6   A0A2H8TQD1   J9K5Q0   B4L275   A0A023EIN3   A0A1I8JW50   A0A1I8JVJ2   A0A240PP95   A0A1C7CZT2   A0A240PM32   A0A1I8JUZ7   A0A1Y9IVQ8   A0A1I8JTD7   A0A182SGW2   A0A182MFA5   F5HMP6   A0NGY0   Q1HR65   D3TNR1   A0A1A9YLQ6   A0A1A9VSA5   A0A1B0BFV6   A0A1A9ZWX7   A0A1A9WSZ1   A0A0L0BPJ7   A0A182F873   W8C240   A0A1B0FDS1   A0A348G690   D1M7X8   A0A2M3YXE8   A0A2M3ZYY1   B6DDT0   A0A1Y9H2W2   A0A1Y9H9K6   Q56FK6   A0A084VS61   A0A0K8U1Y7   B3MS93   A0A0L7KRU0   A0A0L7R9W2   E9G5C7   A0A0P5TCQ6   A0A0A1XL42   A0A0N0BI58  

Pubmed

22651552    26354079    22118469    16023793    25474469    25401762    + More
20566863    26823975    27289101    27129103    24845553    17760985    21347285    28648823    20798317    24508170    30249741    17994087    23691247    20075255    21719571    25315136    18057021    26483478    17244540    24945155    20966253    12364791    14747013    17210077    17204158    17510324    20353571    26108605    24495485    19178717    20920257    23761445    24438588    26227816    21292972    25830018   

EMBL

AY769286    AK402312    BAM18934.1    KQ460473    KPJ14428.1    AK401087    + More
KQ459591    BAM17709.1    KPI97115.1    AGBW02008386    OWR53530.1    AY829855    HQ424702    ADT80646.1    RSAL01000243    RVE43615.1    ODYU01010968    SOQ56409.1    GU084283    ACY95316.1    NWSH01000256    PCG77970.1    MG992410    AXY94848.1    JF264994    AEL28825.1    GFTR01003084    JAW13342.1    GBBI01000529    JAC18183.1    ACPB03003198    GAHY01000757    JAA76753.1    KC507340    AHB12463.1    GBHO01014290    JAG29314.1    DS235222    EEB13529.1    GBRD01012068    JAG53756.1    GDHC01010888    JAQ07741.1    LJIJ01000099    ODN02683.1    GDKW01001310    JAI55285.1    KK852643    KDR19552.1    NEVH01000252    PNF43840.1    EU045355    ADTU01008904    KQ976714    KYM76938.1    KQ980849    KYN12227.1    KQ978068    KYM97386.1    GEDC01023898    GEDC01014535    JAS13400.1    JAS22763.1    LJIJ01001154    ODM92769.1    NNAY01001835    OXU22762.1    GL438237    EFN69274.1    KK107372    QOIP01000004    EZA51745.1    RLU23231.1    CH916370    EDW00240.1    AK417211    BAN20426.1    GFDG01001516    JAV17283.1    GFDF01004929    JAV09155.1    GL888030    EGI69170.1    GFDG01001507    JAV17292.1    KA647339    AFP61968.1    GFDL01010087    JAV24958.1    AY961555    AAX62457.1    GANO01001057    JAB58814.1    DS232464    EDS42173.1    CH940653    EDW62440.1    KRF80642.1    CH963925    EDW78203.1    CP012528    ALC48848.1    KQ563223    KXJ74260.1    AY826144    GFXV01004037    MBW15842.1    ABLF02037391    CH933810    EDW06815.1    GAPW01005129    JAC08469.1    APCN01000875    AXCM01005015    AAAB01008987    EGK97568.1    EGK97569.1    DQ440229    CH477768    EZ423063    ADD19339.1    JXJN01013681    JRES01001651    KNC21154.1    GAMC01000658    JAC05898.1    CCAG010010842    FX985632    BBF97963.1    GU120402    ACY71252.1    GGFM01000183    MBW20934.1    GGFK01000349    MBW33670.1    EU934290    ADMH02002026    ACI30068.1    ETN59901.1    AXCN02000207    AY961494    AAX62396.1    ATLV01015821    KE525036    KFB40805.1    GDHF01031778    GDHF01019571    GDHF01006797    JAI20536.1    JAI32743.1    JAI45517.1    CH902622    EDV34648.1    JTDY01006654    KOB65805.1    KQ414624    KOC67546.1    GL732532    EFX85184.1    GDIP01129805    LRGB01000568    JAL73909.1    KZS18032.1    GBXI01002687    JAD11605.1    KQ435735    KOX77188.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000283053    UP000218220    + More
UP000015103    UP000009046    UP000094527    UP000027135    UP000235965    UP000092462    UP000005205    UP000078540    UP000078492    UP000078542    UP000215335    UP000000311    UP000053097    UP000279307    UP000001070    UP000002358    UP000075880    UP000075900    UP000007755    UP000095301    UP000095300    UP000002320    UP000008792    UP000007798    UP000092553    UP000249989    UP000069940    UP000007819    UP000009192    UP000076407    UP000075903    UP000075881    UP000075882    UP000075885    UP000075902    UP000075920    UP000075840    UP000075901    UP000075883    UP000007062    UP000008820    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000037069    UP000069272    UP000092444    UP000000673    UP000075884    UP000075886    UP000030765    UP000007801    UP000037510    UP000053825    UP000000305    UP000076858    UP000053105   

PRIDE

Q5UAS2   

Pfam

PF00237   Ribosomal_L22

Interpro

IPR036394   Ribosomal_L22/L17_sf        + More
IPR001063   Ribosomal_L22       
IPR005721   Ribosomal_L22/L17_euk/arc       
IPR018260   Ribosomal_L22/L17_CS       

SUPFAM

SSF54843   SSF54843       

Gene 3D

3.90.470.10    

CDD

cd00336  Ribosomal_L22

ProteinModelPortal

Q5UAS2   I4DLZ4   A0A194R9B0   I4DIG9   A0A212FIH1   Q5MGD1   + More
E7DYZ9   A0A437B0D7   A0A2H1WTK7   D1LYK9   A0A2A4K2R6   A0A3G1T1I3   G0ZEB6   A0A224XXR3   A0A023FB83   R4G8L6   A0A109NNV3   A0A0A9YAU7   E0VJH3   A0A0K8SKC4   A0A146LI29   A0A1D2NBP6   A0A0P4VLJ5   A0A067RA17   A0A2J7RSN3   A8CAG3   A0A158N8X5   A0A151HYR0   A0A158N8X7   A0A151IWZ6   A0A195CB07   A0A1B6CJ16   A0A1D2MIG6   A0A232EWM9   E2ABF3   A0A026W6Q9   B4JKY7   R4WNJ5   A0A1L8EFD7   A0A1L8DS55   K7IWP5   A0A182JMJ1   A0A182RXI8   F4W9J5   A0A1L8EEZ8   T1PF74   A0A1Q3FBT6   A0A1I8PCB2   Q56FE5   U5EZC2   B0X7V4   B4M6M3   B4N1G4   A0A0M5JAI6   A0A2Z6YX33   Q5MIR6   A0A2H8TQD1   J9K5Q0   B4L275   A0A023EIN3   A0A1I8JW50   A0A1I8JVJ2   A0A240PP95   A0A1C7CZT2   A0A240PM32   A0A1I8JUZ7   A0A1Y9IVQ8   A0A1I8JTD7   A0A182SGW2   A0A182MFA5   F5HMP6   A0NGY0   Q1HR65   D3TNR1   A0A1A9YLQ6   A0A1A9VSA5   A0A1B0BFV6   A0A1A9ZWX7   A0A1A9WSZ1   A0A0L0BPJ7   A0A182F873   W8C240   A0A1B0FDS1   A0A348G690   D1M7X8   A0A2M3YXE8   A0A2M3ZYY1   B6DDT0   A0A1Y9H2W2   A0A1Y9H9K6   Q56FK6   A0A084VS61   A0A0K8U1Y7   B3MS93   A0A0L7KRU0   A0A0L7R9W2   E9G5C7   A0A0P5TCQ6   A0A0A1XL42   A0A0N0BI58  

PDB

4V6W     E-value=1.20607e-68,     Score=656

KEGG

692671    K02880 large subunit ribosomal protein L17e | (RefSeq) RpL17; ribosomal protein L17

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0015934   GO:0005840   GO:0022625   GO:0002181   GO:0005622   GO:0005216   GO:0016021   GO:0045211   GO:0005975   GO:0004553  

PANTHER

PTHR11593  

Length:

187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.38427

outside

1  -  187

 

 

Pi

205.924078

Theta

213.531424

Tajima's D

0.109096

CLR

104.164451

CSRT

0.39758012099395

Interpretation

Uncertain