Silkworm Genome Informatics Database

Gene

KWMTBOMO12426 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012448

Annotation

NA

Location

Bomo_Chr21(+):3099282-3102993 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.21 Nuclear Reliability : 1.844

CDS

ATGTATGGACGTAGCCGATCTCGTTCCCCGGTCCGCTCCAAGAATCTATCTAAACAAAATGATATTGTGCGCCGTCGTAATGACAATGTTATGGACTGCAGGGTATTATACATAAAACCTATACCTAAGTTTTGGAATGCTGAAAAAGTAAAGAGTTTTATCCAAGATAAATGCAAATCAAGGACAATACCAGAAAATATAAAATTTGTGTTACTTTTCATAGAAGACAACGGTGACCCTTCATGTCTGGTCAAATTTGCAAATTCTTACATATGCAATTTGGCTTTGATGGAGCTAGAAAATGTGGAAATTGATGGAAAAAGACTTTTCATAAATTTGGACACTGGTATAATTTTTTTTTTTTGTATCTATTTTCAGATGAGATGA

Protein

MYGRSRSRSPVRSKNLSKQNDIVRRRNDNVMDCRVLYIKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVKFANSYICNLALMELENVEIDGKRLFINLDTGIIFFFCIYFQMR

Uniprot

S4P1F7

Pubmed

23622113

EMBL

GAIX01007279 JAA85281.1

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

S4P1F7

KEGG

101743393 no KO assigned | (RefSeq) uncharacterized LOC101743393

GO

GO:0003723 GO:0000166 GO:0006810 GO:0016020 GO:0006811 GO:0004889 GO:0005216 GO:0016021 GO:0045211 GO:0005975 GO:0004553 GO:0003676

Length:

128

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

12.50702

Exp number, first 60 AAs:

0

Total prob of N-in:

0.76040

inside

1 - 108

TMhelix

109 - 127

outside

128 - 128

Pi

182.661977

Theta

179.96203

Tajima's D

0.133346

CLR

0.191383

CSRT

0.39898005099745

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics