Gene

KWMTBOMO12401  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012429

Annotation

PREDICTED:_hnRNPA/B-like_28_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr21(-):2253930-2269876      View in EpiBrowser

Full name

Heterogeneous nuclear ribonucleoprotein 27C      

Alternative Name

HRP48.1
hnRNP 48

Location in the cell

Nuclear   Reliability : 3.341

CDS

ATGCGTATGAATCCAGACATGGACGATGATGAGAAGGGAAAACTATTTGTTGGAGGACTATCATGGGAAACATCCCAAGAGAACTTGCAACGCTATTTCTCACGTTATGGCGAAGTGATCGACTGTGTCGTCATGAAGAATAGCGAGTCAGGACGTTCGAGGGGCTTTGGTTTCGTGACATTTGCTGATCCTTCACTGGTCAACCTCGTGCTACAGAATGGACCTCATCAACTTGATGGCAGGACCATCGACCCTAAGCCGTGCAATCCTCGCACTCTTCAAAAACCGAAACGTGGCGGTGGATACCCTAAGGTGTTCCTTGGCGGGCTGCCATCGAACGTTACCGAAACCGATCTCAGGGTATTTTTCGGACGCTATGGGAAGGTCATGGAGGTGGTCATTATGTATGATCAAGAGAAGAAAAAGTCTAGGGGTTTTGGATTCTTGTCTTTCGAGGATGAAATTTCTGTTGAGAGAGTGACCCAAGAACACTTCATTAACCTCAACGGGAAGCAGGTTGAGATAAAGCGCGCTGAGCCTCGAGACGGGTCTGGCAAGCTCGGGTCGGGAGGCGGCGGCATGGGCGGCGGCGCCATGAACGCGCCCGGGGACGCGCCCGCCGCCGGCCAGTGGGGGCCGCCCGCCGCGCCCATGAACATGATACAGGGACACAACGGACAGATGGGAGGCCCGCCCATCAACATGCCCATGGCAGGCCCTAACATCATGCAAGGGTAA

Protein

MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQVEIKRAEPRDGSGKLGSGGGGMGGGAMNAPGDAPAAGQWGPPAAPMNMIQGHNGQMGGPPINMPMAGPNIMQG

Keywords

Complete proteome   Cytoplasm   Nucleus   Phosphoprotein   Reference proteome   Repeat   Ribonucleoprotein   RNA-binding  

Feature

chain  Heterogeneous nuclear ribonucleoprotein 27C

Uniprot

A0A2A4JKX1   A0A2A4JKT6   A0A212FJB4   S4PLS6   A0A194R9C9   A0A437BB56   + More
A0A194PUV1   B9VS67   A0A1E1W1T5   A9QUN2   A0A1B0CAT0   A0A1L8DGQ5   A0A0T6BFR2   U5ENZ1   V5GSK1   V5I8Y3   V5G3I0   N6U2V6   A0A1Y1JWL7   A0A1Y1JYV9   A0A1Y1JWK6   A0A1Y1K0F4   A0A3B0JH94   Q29JX9   A0A411G6P7   W8BJX0   Q3YMU1   B3MKR7   A0A139WAR2   A0A139WAL8   B4JQL7   B4N069   B3N663   B4NZZ1   B4HY00   B4Q596   A0A0M5IW75   A0A232F422   B4KJW4   B4LRP0   A0A0A1XN82   A0A0K8V9Q4   A0A034VA73   E1JHA4   P48809   A0A1Y1JVJ9   L0CRN0   L0CR94   A0A1Y1JSZ9   L0CPX5   A0A1Y1JSF0   A0A0J7KSU6   A0A1Y1JT20   A0A1B6KT04   A0A1A9XGV1   A0A1B0BJG4   A0A0C9R259   A0A1Y1JVJ6   A0A1Y1JSE0   A0A0C9R226   A0A1A9V9K9   A0A1B0A506   D3TLW0   A0A1W4UNE6   L0CRY2   L0CQ61   A0A0C9QCC3   U4UPX7   A0A158ND26   A0A3L8DKS5   T1PA53   A0A2R7VP15   K7JAY9   L0CRY8   L0CQ56   A0A336LVQ5   A0A2A3EAV3   A0A0M8ZQV8   A0A1I8PEB9   A0A3B0K7D6   A0A0K8TRL6   L0CRN5   A0A1B6IYI1   A0A1B6HMU0   A0A1B6G9H7   A0A1B6GC53   A0A1B6F6U2   A0A1B6JIJ5   R4WD34   A0A1B6GXL7   A0A1B6J2C5   A0A1B6EI19   A0A1B6HC09   A0A1B6H8X1   A0A1B6JBF8   T1HKF5   A0A1B6ELT4   A0A224XDD5   A0A0V0G3V0   A0A161MMJ8  

Pubmed

22118469    23622113    26354079    19863667    23537049    28004739    + More
15632085    17994087    24495485    15917496    18362917    19820115    18057021    17550304    22936249    28648823    25830018    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    1730754    12537569    8417324    18327897    22997235    20353571    21347285    30249741    25315136    20075255    26369729    23691247   

EMBL

NWSH01001088    PCG72697.1    PCG72695.1    AGBW02008292    OWR53825.1    GAIX01000431    + More
JAA92129.1    KQ460473    KPJ14448.1    RSAL01000098    RVE47624.1    KQ459591    KPI97097.1    FJ598129    ACM44033.1    GDQN01010094    JAT80960.1    EU266056    ABX60898.1    AJWK01004236    GFDF01008473    JAV05611.1    LJIG01000759    KRT86181.1    GANO01000386    JAB59485.1    GALX01003884    JAB64582.1    GALX01003885    JAB64581.1    GALX01003886    JAB64580.1    APGK01044516    APGK01044517    APGK01044518    KB741026    ENN74946.1    GEZM01101946    JAV52180.1    GEZM01101944    GEZM01101938    GEZM01101936    JAV52196.1    GEZM01101954    GEZM01101949    GEZM01101940    JAV52170.1    GEZM01101942    JAV52187.1    OUUW01000006    SPP81555.1    CH379062    EAL32832.1    MH365775    QBB01584.1    GAMC01016646    JAB89909.1    DQ062785    AAY56658.1    CH902620    EDV31598.1    KQ971380    KYB24981.1    KYB24982.1    CH916372    EDV99197.1    CH963920    EDW78004.1    CH954177    EDV59150.1    KQS70654.1    CM000157    EDW87818.1    KRJ97418.1    KRJ97419.1    CH480818    EDW51930.1    CM000361    CM002910    EDX04029.1    KMY88648.1    KMY88649.1    CP012523    ALC38644.1    NNAY01001063    OXU25279.1    CH933807    EDW12567.1    CH940649    EDW64642.1    GBXI01002249    JAD12043.1    GDHF01030206    GDHF01022344    GDHF01016756    GDHF01004863    JAI22108.1    JAI29970.1    JAI35558.1    JAI47451.1    GAKP01020290    GAKP01020287    GAKP01020283    JAC38665.1    AE014134    ACZ94188.1    ACZ94189.1    AFH03591.1    AFH03592.1    AFH03593.1    X62639    DQ062784    AY069699    AY128430    S51720    GEZM01101953    JAV52171.1    KC116204    AGA18933.1    KC116206    AGA18935.1    GEZM01101950    JAV52173.1    KC116205    AGA18934.1    GEZM01101948    GEZM01101947    GEZM01101941    JAV52179.1    LBMM01003549    KMQ93396.1    GEZM01101945    GEZM01101943    GEZM01101939    JAV52193.1    GEBQ01025394    JAT14583.1    JXJN01015389    GBYB01000946    JAG70713.1    GEZM01101934    JAV52198.1    GEZM01101952    JAV52172.1    GBYB01002055    JAG71822.1    CCAG010014240    EZ422412    ADD18688.1    KC116202    AGA18931.1    KC116208    AGA18937.1    GBYB01000949    JAG70716.1    KB632309    ERL92080.1    ADTU01012187    ADTU01012188    ADTU01012189    ADTU01012190    ADTU01012191    ADTU01012192    ADTU01012193    QOIP01000007    RLU20509.1    KA645569    AFP60198.1    KK854011    PTY09282.1    AAZX01008408    AAZX01014048    AAZX01015959    KC116207    AGA18936.1    KC116203    AGA18932.1    UFQS01000140    UFQT01000140    SSX00353.1    SSX20733.1    KZ288302    PBC28820.1    KQ435896    KOX69280.1    SPP81556.1    GDAI01000820    JAI16783.1    KC116209    AGA18938.1    GECU01015796    JAS91910.1    GECU01031745    JAS75961.1    GECZ01010685    JAS59084.1    GECZ01009755    JAS60014.1    GECZ01023791    JAS45978.1    GECU01008757    JAS98949.1    AK417358    BAN20573.1    GECZ01002627    JAS67142.1    GECU01014388    JAS93318.1    GECZ01032228    JAS37541.1    GECU01035495    JAS72211.1    GECU01036615    JAS71091.1    GECU01011096    JAS96610.1    ACPB03002000    ACPB03002001    GECZ01030879    JAS38890.1    GFTR01005971    JAW10455.1    GECL01003372    JAP02752.1    GEMB01001726    JAS01438.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000283053    UP000053268    UP000092461    + More
UP000019118    UP000268350    UP000001819    UP000007801    UP000007266    UP000001070    UP000007798    UP000008711    UP000002282    UP000001292    UP000000304    UP000092553    UP000215335    UP000009192    UP000008792    UP000000803    UP000036403    UP000092443    UP000092460    UP000078200    UP000092445    UP000092444    UP000192221    UP000030742    UP000005205    UP000279307    UP000095301    UP000002358    UP000242457    UP000053105    UP000095300    UP000015103   

PRIDE

B9VS67    A9QUN2    E1JHA4    P48809    L0CPX5   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR034131   DAZAP1_RRM2       
IPR034134   DAZAP1_RRM1       
IPR037366   BOULE/DAZ       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12327  RRM2_DAZAP1
cd12574  RRM1_DAZAP1

ProteinModelPortal

A0A2A4JKX1   A0A2A4JKT6   A0A212FJB4   S4PLS6   A0A194R9C9   A0A437BB56   + More
A0A194PUV1   B9VS67   A0A1E1W1T5   A9QUN2   A0A1B0CAT0   A0A1L8DGQ5   A0A0T6BFR2   U5ENZ1   V5GSK1   V5I8Y3   V5G3I0   N6U2V6   A0A1Y1JWL7   A0A1Y1JYV9   A0A1Y1JWK6   A0A1Y1K0F4   A0A3B0JH94   Q29JX9   A0A411G6P7   W8BJX0   Q3YMU1   B3MKR7   A0A139WAR2   A0A139WAL8   B4JQL7   B4N069   B3N663   B4NZZ1   B4HY00   B4Q596   A0A0M5IW75   A0A232F422   B4KJW4   B4LRP0   A0A0A1XN82   A0A0K8V9Q4   A0A034VA73   E1JHA4   P48809   A0A1Y1JVJ9   L0CRN0   L0CR94   A0A1Y1JSZ9   L0CPX5   A0A1Y1JSF0   A0A0J7KSU6   A0A1Y1JT20   A0A1B6KT04   A0A1A9XGV1   A0A1B0BJG4   A0A0C9R259   A0A1Y1JVJ6   A0A1Y1JSE0   A0A0C9R226   A0A1A9V9K9   A0A1B0A506   D3TLW0   A0A1W4UNE6   L0CRY2   L0CQ61   A0A0C9QCC3   U4UPX7   A0A158ND26   A0A3L8DKS5   T1PA53   A0A2R7VP15   K7JAY9   L0CRY8   L0CQ56   A0A336LVQ5   A0A2A3EAV3   A0A0M8ZQV8   A0A1I8PEB9   A0A3B0K7D6   A0A0K8TRL6   L0CRN5   A0A1B6IYI1   A0A1B6HMU0   A0A1B6G9H7   A0A1B6GC53   A0A1B6F6U2   A0A1B6JIJ5   R4WD34   A0A1B6GXL7   A0A1B6J2C5   A0A1B6EI19   A0A1B6HC09   A0A1B6H8X1   A0A1B6JBF8   T1HKF5   A0A1B6ELT4   A0A224XDD5   A0A0V0G3V0   A0A161MMJ8  

PDB

2KM8     E-value=3.64284e-36,     Score=377

KEGG

100127018    K14411 RNA-binding protein Musashi | (RefSeq) Hrp28; hnRNPA/B-like 28

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0007411   GO:0003730   GO:0045727   GO:0048024   GO:1903688   GO:0003697   GO:0005654   GO:0043186   GO:0045451   GO:0008266   GO:0034046   GO:0048026   GO:0007283   GO:1990904   GO:0032991   GO:0048027   GO:0005634   GO:0005737   GO:0003729   GO:0007319   GO:0003676   GO:0000166   GO:0006810   GO:0006281   GO:0043140   GO:0006310   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR11176  

Subcellular location

Nucleus  
Cytoplasm  

Length:

245

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0371600000000001

Exp number, first 60 AAs:

0.01107

Total prob of N-in:

0.10432

outside

1  -  245

 

 

Pi

209.584059

Theta

180.440502

Tajima's D

0.088757

CLR

0.778441

CSRT

0.392380380980951

Interpretation

Uncertain