Gene

KWMTBOMO12396

Pre Gene Modal

BGIBMGA012441

Annotation

CRAL-TRIO_domain-containing_protein?_partial_[Manduca_sexta]

Location

Bomo_Chr21(+):2141537-2148272      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.1 Mitochondrial   Reliability : 1.398 PlasmaMembrane   Reliability : 1.472

CDS

ATGTTCGACAGGCCTGATGTCGGAAGACTCTCTATATTTCGATTTGGTATGTGGGACCCAAACGAGTTCCCGGTGGAGGACTTGGTTAGGGCCGGCATGGCGATGGTTGAGATTGGGATACGACAACCCAAGCTTCAAGTTCTCGGAGGGACGGTTATTGTCGATCTAGAAGGCATTACACTGCGGCACGTGGCGACCTTGACGCCTACGGTTGCGTACCAGATTGTCTCTTTAATGGGGCTCGCGAACCCGACTCGAGTGAAAGGAGCACACTTGATCAATTACTCATGGATATTGAACACGTTTTTTTACTTATTCAAGAAATTCATACCGCGTCGCGCCTGGGACACGATATACTTCCACGGAAACGATCTGAAGTCTTTACAGCAACATATACCCGTGGAGTGTCTGCCGGCGAGATATGGAGGCTCGTGCAGGAGCCACTGCTCGTTTGCCGTGTGGCTGAACAAAATCAAGAAATACCGCGACGATAAATTCGACAGAGAGATGAAAGAATTAGGTTATGTCATTAAAGAATAA

Protein

MFDRPDVGRLSIFRFGMWDPNEFPVEDLVRAGMAMVEIGIRQPKLQVLGGTVIVDLEGITLRHVATLTPTVAYQIVSLMGLANPTRVKGAHLINYSWILNTFFYLFKKFIPRRAWDTIYFHGNDLKSLQQHIPVECLPARYGGSCRSHCSFAVWLNKIKKYRDDKFDREMKELGYVIKE

Uniprot

H9JSD0   A0A0S2Z3F3   A0A212FK12   A0A2H1V8Z2   A0A194R9D4   A0A3S2LZG7   + More
I4DLF8   A0A194PWG0   A0A2A4J0W6   A0A2H4RMQ8   A0A2H4RMU7   I4DS45   A0A1E1WU69   A0A1E1WR52   A0A1E1VYH6   A0A2H4RMP6   H9JSC1   A0A212F3L1   A0A194RAC5   A0A194PVS2   A0A2H1WVH3   S4PF09   A0A2W1BVU1   A0A2H4RMQ9   A0A2H4RMU8   A0A2A4JCS5   A0A2H1VEG3   H9JSC0   A0A3S2NDL1   A0A212EYW0   A0A0S2Z371   A0A2A4JBT7   A0A437B2L8   K7J584   A0A232FJD8   A0A2W1BQN2   A0A2M4BVI7   A0A088A1P4   A0A2M4BVL7   A0A2R7W4J6   A0A2M4ADP7   T1DG07   A0A2M4ADQ0   A0A2A3ENK2   A0A2M3ZAW7   W5JFN1   A0A088AQZ8   A0A0J7KQ03   A0A154PSY4   A0A182L6I3   A0A310SSY3   A0A182USL8   A0A453YJS9   A0A1S4H0R7   A0A2C9H8Q1   A0A182U9P9   A0A084VM70   A0A0M8ZXJ1   A0A182JEP7   A0A182KCU4   A0A182M7C8   A0A182QDV4   A0A1I8NQ91   A0A1L8DYZ0   E2B175   A0A1I8N4Y6   A0A1L8DYX8   A0A1Q3FJS7   A0A182SLW3   B0WIP9   A0A1S4JIR2   A0A0L7QVN0   A0A151XFF6   Q16T90   A0A158NHN1   Q16T91   A0A171B1L9   A0A1B6CWG4   A0A182NES0   A0A182P9H0   A0A195D4M7   A0A3B0JTL6   A0A023F8M2   A0A069DR99   A0A1B6EH81   A0A3B0KI89   A0A023ENW0   A0A3B0JTP5   A0A3B0KNS0   A0A182GRY0   H9J0U5   A0A0L0CH03   A0A182VUK4   E2C3S6   A0A195AZZ6   A0A067R7A4   Q8T9G7   Q9VIW1   A0A195EF31  

Pubmed

19121390    25684408    22118469    26354079    22651552    29136137    + More
23622113    28756777    20075255    28648823    20920257    23761445    20966253    12364791    24438588    20798317    25315136    17510324    21347285    25474469    26334808    24945155    26483478    26108605    24845553    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01033702    BABH01033703    BABH01033704    KT943565    ALQ33323.1    AGBW02008159    + More
OWR54085.1    ODYU01001300    SOQ37320.1    KQ460473    KPJ14453.1    RSAL01000098    RVE47627.1    AK402126    BAM18748.1    KQ459591    KPI97094.1    NWSH01004188    PCG65376.1    MG434606    ATY51912.1    MG434665    ATY51971.1    AK405417    BAM20735.1    GDQN01000489    JAT90565.1    GDQN01004704    GDQN01001600    JAT86350.1    JAT89454.1    GDQN01011268    JAT79786.1    MG434596    ATY51902.1    BABH01033696    AGBW02010560    OWR48321.1    KPJ14454.1    KPI97093.1    ODYU01010971    SOQ56414.1    GAIX01006815    JAA85745.1    KZ149932    PZC77317.1    MG434615    ATY51921.1    MG434651    ATY51957.1    NWSH01001963    PCG69556.1    ODYU01002128    SOQ39228.1    BABH01033697    RSAL01000188    RVE44745.1    AGBW02011436    OWR46676.1    OWR48320.1    KT943561    ALQ33319.1    PCG69557.1    RVE44746.1    AAZX01000350    NNAY01000143    OXU30599.1    PZC77318.1    GGFJ01007959    MBW57100.1    GGFJ01007958    MBW57099.1    KK854323    PTY14653.1    GGFK01005593    MBW38914.1    GAMD01002946    JAA98644.1    GGFK01005595    MBW38916.1    KZ288215    PBC32776.1    GGFM01004847    MBW25598.1    ADMH02001356    ETN62876.1    LBMM01004427    KMQ92428.1    KQ435050    KZC14220.1    KQ760343    OAD60852.1    APCN01004215    AAAB01008835    ATLV01014581    KE524975    KFB39064.1    KQ435803    KOX73150.1    AXCM01005439    AXCN02000844    GFDF01002447    JAV11637.1    GL444799    EFN60567.1    GFDF01002448    JAV11636.1    GFDL01007164    JAV27881.1    DS231951    EDS28626.1    KQ414725    KOC62670.1    KQ982194    KYQ59109.1    CH477657    EAT37700.1    ADTU01015717    EAT37699.1    GEMB01000384    JAS02737.1    GEDC01019442    JAS17856.1    KQ976870    KYN07796.1    OUUW01000010    SPP85477.1    GBBI01001005    JAC17707.1    GBGD01002291    JAC86598.1    GECZ01032471    JAS37298.1    SPP85476.1    GAPW01002969    GAPW01002968    JAC10630.1    SPP85475.1    SPP85478.1    JXUM01083834    KQ563399    KXJ73895.1    BABH01010352    BABH01010353    JRES01000498    KNC30774.1    GL452364    EFN77312.1    KQ976694    KYM77615.1    KK852692    KDR18336.1    AY069774    AE014134    AAL39919.1    AAN11043.2    AY113277    AAF53803.1    AAM29282.1    AAN11044.1    KQ979039    KYN23459.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000283053    UP000053268    UP000218220    + More
UP000002358    UP000215335    UP000005203    UP000242457    UP000000673    UP000036403    UP000076502    UP000075882    UP000075903    UP000075840    UP000076407    UP000075902    UP000030765    UP000053105    UP000075880    UP000075881    UP000075883    UP000075886    UP000095300    UP000000311    UP000095301    UP000075901    UP000002320    UP000053825    UP000075809    UP000008820    UP000005205    UP000075884    UP000075885    UP000078542    UP000268350    UP000069940    UP000249989    UP000037069    UP000075920    UP000008237    UP000078540    UP000027135    UP000000803    UP000078492   

PRIDE

H9JSD0    H9JSC1    H9JSC0    H9J0U5    Q8T9G7    Q9VIW1    + More

Pfam

PF03765   CRAL_TRIO_N        + More
PF00650   CRAL_TRIO
PF00646   F-box
PF05267   DUF725

Interpro

IPR036273   CRAL/TRIO_N_dom_sf        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR011074   CRAL/TRIO_N_dom       
IPR001251   CRAL-TRIO_dom       
IPR036047   F-box-like_dom_sf       
IPR001810   F-box_dom       
IPR007931   TsetseEP       

SUPFAM

SSF46938   SSF46938        + More
SSF52087   SSF52087       
SSF81383   SSF81383       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9JSD0   A0A0S2Z3F3   A0A212FK12   A0A2H1V8Z2   A0A194R9D4   A0A3S2LZG7   + More
I4DLF8   A0A194PWG0   A0A2A4J0W6   A0A2H4RMQ8   A0A2H4RMU7   I4DS45   A0A1E1WU69   A0A1E1WR52   A0A1E1VYH6   A0A2H4RMP6   H9JSC1   A0A212F3L1   A0A194RAC5   A0A194PVS2   A0A2H1WVH3   S4PF09   A0A2W1BVU1   A0A2H4RMQ9   A0A2H4RMU8   A0A2A4JCS5   A0A2H1VEG3   H9JSC0   A0A3S2NDL1   A0A212EYW0   A0A0S2Z371   A0A2A4JBT7   A0A437B2L8   K7J584   A0A232FJD8   A0A2W1BQN2   A0A2M4BVI7   A0A088A1P4   A0A2M4BVL7   A0A2R7W4J6   A0A2M4ADP7   T1DG07   A0A2M4ADQ0   A0A2A3ENK2   A0A2M3ZAW7   W5JFN1   A0A088AQZ8   A0A0J7KQ03   A0A154PSY4   A0A182L6I3   A0A310SSY3   A0A182USL8   A0A453YJS9   A0A1S4H0R7   A0A2C9H8Q1   A0A182U9P9   A0A084VM70   A0A0M8ZXJ1   A0A182JEP7   A0A182KCU4   A0A182M7C8   A0A182QDV4   A0A1I8NQ91   A0A1L8DYZ0   E2B175   A0A1I8N4Y6   A0A1L8DYX8   A0A1Q3FJS7   A0A182SLW3   B0WIP9   A0A1S4JIR2   A0A0L7QVN0   A0A151XFF6   Q16T90   A0A158NHN1   Q16T91   A0A171B1L9   A0A1B6CWG4   A0A182NES0   A0A182P9H0   A0A195D4M7   A0A3B0JTL6   A0A023F8M2   A0A069DR99   A0A1B6EH81   A0A3B0KI89   A0A023ENW0   A0A3B0JTP5   A0A3B0KNS0   A0A182GRY0   H9J0U5   A0A0L0CH03   A0A182VUK4   E2C3S6   A0A195AZZ6   A0A067R7A4   Q8T9G7   Q9VIW1   A0A195EF31  

PDB

3W68     E-value=1.19808e-19,     Score=233

KEGG

101742052    no KO assigned | (RefSeq) clavesin-2-like

GO

GO:0005215   GO:0005622   GO:0006810   GO:0003676   GO:0006281   GO:0043140   GO:0006310   GO:0000049   GO:0005975   GO:0004553  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.22022

Exp number, first 60 AAs:

0.04601

Total prob of N-in:

0.07705

outside

1  -  179

 

 

Pi

134.539949

Theta

140.088341

Tajima's D

-0.296219

CLR

1.128148

CSRT

0.290735463226839

Interpretation

Possibly Positive selection