Gene

KWMTBOMO12395

Pre Gene Modal

BGIBMGA012431

Annotation

CRAL-TRIO_domain-containing_protein?_partial_[Manduca_sexta]

Location

Bomo_Chr21(-):2098473-2100586      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.217 Mitochondrial   Reliability : 1.075 Nuclear   Reliability : 1.449

CDS

ATGCAACCTAAGCTACAGATAGTGGGTGGCACGGGACTCCTGGATTGCGAGGGGCTCACTATGAAGCACATGCGGCAGTTCTCGCCTTCAGTCGCCATGCAGATTATGAATATTATGGTCTATTCTTTCCCCCTCCATCAACGTGGGATCCACATCGTGAACTGCTCGAGGTTCTTCGAAACAATATTTCCTTTGTTCCGACGGTTCGCACCGGCCGACGACCTATGGCAGAAAGTGTACATGCACGGATATGATATTAGCTCTTTACACAGACACGTGGATCCAGAATGCTTGCCAAAGAAATATGGCGGATATCGCGACCCCGTTTCTTTGGAATTATGGCTGACCAAGATTAAACAATACGGAAGCACGGAATTCGATGACGAAATGAAGAATCTCGGATACAAAAACAATTATTAG

Protein

MQPKLQIVGGTGLLDCEGLTMKHMRQFSPSVAMQIMNIMVYSFPLHQRGIHIVNCSRFFETIFPLFRRFAPADDLWQKVYMHGYDISSLHRHVDPECLPKKYGGYRDPVSLELWLTKIKQYGSTEFDDEMKNLGYKNNY

Uniprot

H9JSC0   A0A0S2Z371   A0A3S2NDL1   A0A212EYW0   A0A2A4JCS5   A0A2H1WVH3   + More
A0A2H4RMQ9   A0A2A4J0W6   S4PF09   I4DS45   A0A2H4RMQ8   A0A2H1V8Z2   A0A2H4RMU8   A0A212FK12   I4DLF8   A0A194R9D4   A0A3S2LZG7   A0A194PWG0   H9JSD0   A0A194RAC5   A0A194PVS2   A0A1E1WU69   A0A0S2Z3F3   A0A1E1VYH6   A0A2H4RMU7   A0A2H4RMP6   H9JSC1   A0A1E1WR52   A0A212F3L1   A0A0L7LCR3   A0A2W1BVU1   A0A2H1VEG3   B4N164   A0A1W4VFB1   A0A1W4V301   B3MN64   A0A0P8XGC8   A0A0J9R427   B4Q9Y4   B4I5V6   Q9VIW1   Q8T9G7   B3NM52   A0A182SLW3   A0A1L8DYZ0   A0A2S2QBB3   A0A3B0KNS0   A0A3B0JTP5   A0A3B0JTL6   A0A1I8N4Y6   A0A3B0KI89   A0A1L8DYX8   A0A2J7PEI5   A0A182L6I3   Q16T90   A0A2C9H8Q1   A0A182U9P9   A0A453YJS9   A0A1S4H0R7   B4JCV0   K7J584   A0A182USL8   A0A182KCU4   B4KIH1   A0A0Q9X6A4   A0A232FJD8   Q16T91   B4M8J0   A0A1I8NQ91   A0A0Q9VYK5   T1DG07   A0A2M3ZAW7   A0A437B2L8   A0A0M4EAP6   A0A1S4JIR2   B0WIP9   A0A2M4ADP7   A0A2M4BVL7   A0A2M4BVI7   A0A2M4ADQ0   A0A182M7C8   W5JFN1   A0A2S2PKI9   A0A2H8TKU5   A0A1Q3FJS7   A0A0R1DVG9   A0A0Q5VJH4   A0A182GRY0   Q29K54   A0A0R3NV55   B4PAY9   A0A0R3P0C1   A0A023ENW0   A0A2A4JBT7   A0A084VM70   B4GWX2   A0A067R7A4   A0A182VUK4   D6WK78  

Pubmed

19121390    25684408    22118469    29136137    23622113    22651552    + More
26354079    26227816    28756777    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    20966253    17510324    12364791    20075255    28648823    18057021    20920257    23761445    17550304    26483478    15632085    24945155    24438588    24845553    18362917    19820115   

EMBL

BABH01033696    BABH01033697    KT943561    ALQ33319.1    RSAL01000188    RVE44745.1    + More
AGBW02011436    AGBW02010560    OWR46676.1    OWR48320.1    NWSH01001963    PCG69556.1    ODYU01010971    SOQ56414.1    MG434615    ATY51921.1    NWSH01004188    PCG65376.1    GAIX01006815    JAA85745.1    AK405417    BAM20735.1    MG434606    ATY51912.1    ODYU01001300    SOQ37320.1    MG434651    ATY51957.1    AGBW02008159    OWR54085.1    AK402126    BAM18748.1    KQ460473    KPJ14453.1    RSAL01000098    RVE47627.1    KQ459591    KPI97094.1    BABH01033702    BABH01033703    BABH01033704    KPJ14454.1    KPI97093.1    GDQN01000489    JAT90565.1    KT943565    ALQ33323.1    GDQN01011268    JAT79786.1    MG434665    ATY51971.1    MG434596    ATY51902.1    GDQN01004704    GDQN01001600    JAT86350.1    JAT89454.1    OWR48321.1    JTDY01001677    KOB73179.1    KZ149932    PZC77317.1    ODYU01002128    SOQ39228.1    CH963920    EDW78046.1    CH902620    EDV32042.2    KPU73742.1    CM002910    KMY91017.1    CM000361    EDX05514.1    KMY91018.1    CH480822    EDW55762.1    AE014134    AY113277    AAF53803.1    AAM29282.1    AAN11044.1    AY069774    AAL39919.1    AAN11043.2    CH954179    EDV54652.1    GFDF01002447    JAV11637.1    GGMS01005825    MBY75028.1    OUUW01000010    SPP85478.1    SPP85475.1    SPP85477.1    SPP85476.1    GFDF01002448    JAV11636.1    NEVH01026096    PNF14739.1    CH477657    EAT37700.1    APCN01004215    AAAB01008835    CH916368    EDW03189.1    AAZX01000350    CH933807    EDW13468.2    KRG03776.1    NNAY01000143    OXU30599.1    EAT37699.1    CH940654    EDW57516.2    KRF77805.1    KRF77806.1    GAMD01002946    JAA98644.1    GGFM01004847    MBW25598.1    RVE44746.1    CP012523    ALC39501.1    DS231951    EDS28626.1    GGFK01005593    MBW38914.1    GGFJ01007958    MBW57099.1    GGFJ01007959    MBW57100.1    GGFK01005595    MBW38916.1    AXCM01005439    ADMH02001356    ETN62876.1    GGMR01017285    MBY29904.1    GFXV01002951    MBW14756.1    GFDL01007164    JAV27881.1    CM000158    KRJ99169.1    KQS61885.1    JXUM01083834    KQ563399    KXJ73895.1    CH379061    EAL33324.2    KRT04900.1    EDW90418.2    KRT04901.1    GAPW01002969    GAPW01002968    JAC10630.1    PCG69557.1    ATLV01014581    KE524975    KFB39064.1    CH479195    EDW27299.1    KK852692    KDR18336.1    KQ971342    EFA03950.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000218220    UP000053240    UP000053268    + More
UP000037510    UP000007798    UP000192221    UP000007801    UP000000304    UP000001292    UP000000803    UP000008711    UP000075901    UP000268350    UP000095301    UP000235965    UP000075882    UP000008820    UP000076407    UP000075902    UP000075840    UP000001070    UP000002358    UP000075903    UP000075881    UP000009192    UP000215335    UP000008792    UP000095300    UP000092553    UP000002320    UP000075883    UP000000673    UP000002282    UP000069940    UP000249989    UP000001819    UP000030765    UP000008744    UP000027135    UP000075920    UP000007266   

PRIDE

H9JSC0    H9JSD0    H9JSC1    Q9VIW1    Q8T9G7   

Pfam

PF00650   CRAL_TRIO        + More
PF03765   CRAL_TRIO_N
PF00646   F-box
PF05267   DUF725

Interpro

IPR036273   CRAL/TRIO_N_dom_sf        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR001251   CRAL-TRIO_dom       
IPR011074   CRAL/TRIO_N_dom       
IPR036047   F-box-like_dom_sf       
IPR001810   F-box_dom       
IPR007931   TsetseEP       

SUPFAM

SSF52087   SSF52087        + More
SSF46938   SSF46938       
SSF81383   SSF81383       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9JSC0   A0A0S2Z371   A0A3S2NDL1   A0A212EYW0   A0A2A4JCS5   A0A2H1WVH3   + More
A0A2H4RMQ9   A0A2A4J0W6   S4PF09   I4DS45   A0A2H4RMQ8   A0A2H1V8Z2   A0A2H4RMU8   A0A212FK12   I4DLF8   A0A194R9D4   A0A3S2LZG7   A0A194PWG0   H9JSD0   A0A194RAC5   A0A194PVS2   A0A1E1WU69   A0A0S2Z3F3   A0A1E1VYH6   A0A2H4RMU7   A0A2H4RMP6   H9JSC1   A0A1E1WR52   A0A212F3L1   A0A0L7LCR3   A0A2W1BVU1   A0A2H1VEG3   B4N164   A0A1W4VFB1   A0A1W4V301   B3MN64   A0A0P8XGC8   A0A0J9R427   B4Q9Y4   B4I5V6   Q9VIW1   Q8T9G7   B3NM52   A0A182SLW3   A0A1L8DYZ0   A0A2S2QBB3   A0A3B0KNS0   A0A3B0JTP5   A0A3B0JTL6   A0A1I8N4Y6   A0A3B0KI89   A0A1L8DYX8   A0A2J7PEI5   A0A182L6I3   Q16T90   A0A2C9H8Q1   A0A182U9P9   A0A453YJS9   A0A1S4H0R7   B4JCV0   K7J584   A0A182USL8   A0A182KCU4   B4KIH1   A0A0Q9X6A4   A0A232FJD8   Q16T91   B4M8J0   A0A1I8NQ91   A0A0Q9VYK5   T1DG07   A0A2M3ZAW7   A0A437B2L8   A0A0M4EAP6   A0A1S4JIR2   B0WIP9   A0A2M4ADP7   A0A2M4BVL7   A0A2M4BVI7   A0A2M4ADQ0   A0A182M7C8   W5JFN1   A0A2S2PKI9   A0A2H8TKU5   A0A1Q3FJS7   A0A0R1DVG9   A0A0Q5VJH4   A0A182GRY0   Q29K54   A0A0R3NV55   B4PAY9   A0A0R3P0C1   A0A023ENW0   A0A2A4JBT7   A0A084VM70   B4GWX2   A0A067R7A4   A0A182VUK4   D6WK78  

PDB

3W68     E-value=1.51636e-11,     Score=161

KEGG

101744403    no KO assigned | (RefSeq) clavesin-1-like

GO

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.59926

Exp number, first 60 AAs:

0.59588

Total prob of N-in:

0.11516

outside

1  -  139

 

 

Pi

206.698406

Theta

172.01921

Tajima's D

0.571201

CLR

0.006005

CSRT

0.540072996350182

Interpretation

Uncertain