Silkworm Genome Informatics Database

Gene

KWMTBOMO12391

Annotation

PREDICTED:_collagen_and_calcium-binding_EGF_domain-containing_protein_1-like_[Papilio_machaon]

Location

Bomo_Chr21(-):2023428-2029416 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.918

CDS

ATGGAGCCGTGCAGTCTGAACCTGTGTGAGCAAGCATGCGAAGTGCAGGGAGAGAGTATGTGGTGTTCCTGCTACCCTGGGTTCCAGTTCAACGCGGAAAGCTATTCCAAGCAAGAGCAGCCGTATTGTGTTGATGTAGACGAGTGTGCGACGAACAATGGTGGGTGTGAGCAACGCTGCGTCAATGATCCTGGAAGCTTCCACTGCGAATGCTCACCGCCGCTCTCACTAGCTAGTGATGGCAAGAAATGTGTCCCACGGATACCGCTGGCTATTGCAGAACCTCTTCCACTTGTGCGCGCCTCCTCTCGATGCTACGCGCCGTGTGACACTGTGACGTGGTTGACCAGGAAAGTGAGACAGCTGAACGATCAACTGCACGCGACACACGCCGCCTTAAAAAAGTTGTTGGAGCACCCAATGCTGAAAGATGACGGTGGCGAAGGCAATTACGCATATAGAGTACTTGACGCAACGGCTCCGTTGGAAGGCGGGTATTGTCGATGCGAGCGAGGACCGAGGGGACCACAAGGACCGCCGGGCATGGAGGGACCCAAAGGTGATACTGGAGCGAGAGGACCTCGGGGCGCACGTGGTCCTAAAGGATCCCTCGACTTGATGCTTCTTATGCTAGCGGATGTAAGGCATGACATACAGAACATTGAGGCGCGCGTTTACAAAGACGGAGAAAAGTATGTATTATTCTTATTTCTAAAACTCTTTTTTTTTATTGCTTAG

Protein

MEPCSLNLCEQACEVQGESMWCSCYPGFQFNAESYSKQEQPYCVDVDECATNNGGCEQRCVNDPGSFHCECSPPLSLASDGKKCVPRIPLAIAEPLPLVRASSRCYAPCDTVTWLTRKVRQLNDQLHATHAALKKLLEHPMLKDDGGEGNYAYRVLDATAPLEGGYCRCERGPRGPQGPPGMEGPKGDTGARGPRGARGPKGSLDLMLLMLADVRHDIQNIEARVYKDGEKYVLFLFLKLFFFIA

Uniprot

A0A2A4JSE5 A0A2A4JU43 A0A2A4JSX5 A0A2A4JTA6 A0A2W1BUH8 A0A2H1WKF9 + More
A0A194REU8 A0A194PUK7 A0A212EU42 A0A437B2Q5 A0A139WNI6 A0A2P8YYV8 A0A2J7QZ25 A0A1W4X5A5 U4U0P8 N6T9F8 A0A401NI16

Pubmed

28756777 26354079 22118469 18362917 19820115 29403074 + More
23537049 30297745

EMBL

NWSH01000666 PCG74931.1 PCG74930.1 PCG74929.1 PCG74928.1 KZ149932 + More
PZC77315.1 ODYU01009219 SOQ53487.1 KQ460473 KPJ14456.1 KQ459591 KPI97091.1 AGBW02012497 OWR44977.1 RSAL01000188 RVE44748.1 KQ971311 KYB29473.1 PYGN01000280 PSN49428.1 NEVH01009080 PNF33834.1 KB631950 ERL87429.1 APGK01047021 APGK01047022 APGK01047023 APGK01047024 APGK01047025 APGK01047026 KB741074 ENN74368.1 BFAA01001124 GCB60503.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151 UP000283053 UP000007266 + More
UP000245037 UP000235965 UP000192223 UP000030742 UP000019118 UP000288216

Pfam

PF07645 EGF_CA

Interpro

IPR000152   EGF-type_Asp/Asn_hydroxyl_site        + More
IPR018097   EGF_Ca-bd_CS
IPR000742   EGF-like_dom
IPR001881   EGF-like_Ca-bd_dom
IPR013032   EGF-like_CS

ProteinModelPortal

A0A2A4JSE5 A0A2A4JU43 A0A2A4JSX5 A0A2A4JTA6 A0A2W1BUH8 A0A2H1WKF9 + More
A0A194REU8 A0A194PUK7 A0A212EU42 A0A437B2Q5 A0A139WNI6 A0A2P8YYV8 A0A2J7QZ25 A0A1W4X5A5 U4U0P8 N6T9F8 A0A401NI16

PDB

3V65 E-value=1.38437e-06, Score=122

KEGG

101741764 K19638 collagen and calcium-binding EGF domain-containing protein 1 | (RefSeq) collagen and calcium-

GO

GO:0005509 GO:0005581 GO:0005515 GO:0006890 GO:0003676 GO:0006281 GO:0043140 GO:0006310 GO:0000049 GO:0005975 GO:0004553

Length:

245

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00375

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01726

outside

1 - 245

Pi

171.240979

Theta

147.518101

Tajima's D

0.616437

CLR

0

CSRT

0.553572321383931

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics