Silkworm Genome Informatics Database

Gene

KWMTBOMO12390

Annotation

PREDICTED:_collagen_and_calcium-binding_EGF_domain-containing_protein_1-like_[Papilio_polytes]

Location

Bomo_Chr21(-):2021452-2023146 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.138

CDS

ATGATAGCTTGGCGCCGCCAACGCAAGCAGGAGAAAATTGACCGGGACAGCAGAACCGAACAGGAGCTAGAAGCGTACACGGCGCCATCTGTTGAAAGCCCCGTTGAAATATCTTCTCGAGGTCGTACGGGAGAAATACGCCACGATTCAACAACTGACTGGTCAATGGTGAAAGGCGACAATGACCTTGAAGACTTGCCGCTGGGCCTCATGGACGACATGAAGGCGCTGGAGAGGCTGCGGCAGTACCACGTGACCGGGAACTCCTCCAAGATTGATGATGAGGAGGAAACTGAGAACGACTACGACTACAGCTTCTACTAG

Protein

MIAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGDNDLEDLPLGLMDDMKALERLRQYHVTGNSSKIDDEEETENDYDYSFY

Uniprot

A0A2A4JU43 A0A2A4JSE5 A0A2A4JSX5 A0A2A4JTA6 A0A2W1BUH8 A0A2H1WKF9 + More
A0A437B2Q5 A0A194REU8 A0A194PUK7 A0A212EU42

Pubmed

28756777 26354079 22118469

EMBL

NWSH01000666 PCG74930.1 PCG74931.1 PCG74929.1 PCG74928.1 KZ149932 + More
PZC77315.1 ODYU01009219 SOQ53487.1 RSAL01000188 RVE44748.1 KQ460473 KPJ14456.1 KQ459591 KPI97091.1 AGBW02012497 OWR44977.1

Proteomes

UP000218220 UP000283053 UP000053240 UP000053268 UP000007151

Interpro

IPR018097   EGF_Ca-bd_CS        + More
IPR000742   EGF-like_dom
IPR000152   EGF-type_Asp/Asn_hydroxyl_site
IPR001881   EGF-like_Ca-bd_dom
IPR013032   EGF-like_CS

ProteinModelPortal

A0A2A4JU43 A0A2A4JSE5 A0A2A4JSX5 A0A2A4JTA6 A0A2W1BUH8 A0A2H1WKF9 + More
A0A437B2Q5 A0A194REU8 A0A194PUK7 A0A212EU42

KEGG

101741764 K19638 collagen and calcium-binding EGF domain-containing protein 1 | (RefSeq) collagen and calcium-

GO

GO:0005509 GO:0005581

Length:

107

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.82402

inside

1 - 107

Pi

139.043817

Theta

131.88504

Tajima's D

-0.593834

CLR

0

CSRT

0.218689065546723

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics