Gene

KWMTBOMO12388

Pre Gene Modal

BGIBMGA012436

Annotation

PREDICTED:_RNA-binding_protein_MEX3D_[Papilio_machaon]

Location

Bomo_Chr21(-):1923803-1998256      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.043

CDS

ATGCCGACGAGCCTCTTCGGCGAATTAGGCGGCGGAGGCGGGCTGGTGGAAGACCAGCGCGCGTTCAAGCTGGCTCTGGAGCTGAGCATGCTGAGCCTGGGCGACAACTTGCCGGCGAGCAACCCGCTGGGGAGCCCGCTCGGGTTCGCGCCTCCTCCGGACGACCGGACCAAGAAGTCGCAGAACATGACGGAGTGCGTGCCGGTGCCATCCTCCGAGCACGTCGCCGAGATCGTCGGACGACAAGGGTGCAAGATTAAAGCTTTGCGAGCGAAGACTAACACTTACATCAAGACACCGGTGAGGGGCGAGGAGCCCGTGTTTGTGGTCACCGGCCGCAAGGAGGACGTCGCACGCGCCAAGCGTGAGATCCTCTCGGCGGCTGAGCACTTCTCTCAGATTCGCGCGTCGCGCAAGTGCGGGTCCGCGCCCCCGCCACCCGCCGGCGCGCCCGGACACGTCACCGCGCAGGTGCGCGTGCCCTACCGCGTGGTCGGGCTGGTCGTCGGACCCAAGGGTGCCACCATCAAACGCATCCAACACACCACTCACACATACATAGTCACCCCGTCCCGCGAGCGCGAGCCCGTGTTCGAGGTAACCGGCTTGCCCGAGAGCGTGGAGGCGGCGCGCAAGGAGATCGAGGCGCACATCGCCCTGCGCACCGGCGCCGGGAACGCGGGGCCCGCGACGCCGGTCGACGAGAGCGAGCCGCTCGCACAGCTGTACCGGGCCGGGATCGTCTCGCTGCTGCGGCCAGAACAAGAAGCGGCTTTCTCGTCAGCCGGCTCGTGCTCGTCGGGAGGCTCTTCCGGCCGGCTCGGTGACTTGCTCGGTATCTGGTCCTCGACCGAGCGCGACGAGGGTCTGGGCGAGTCGCCGTCGTTCGAGTCTCCGGGCGGCGCGGCGGGCGTGTGGGCGTGGGGCCCGACCCGGCCCTCGCCGTCCACGTCTCCGGCCCGCGCGTGCGGGGTGTGCGGGGAGCGCGGCGTGGCGGCGGCGCTGGTGCCGTGCGGACACAACCTGTTCTGCATGGAGTGCGCGCAGCGGCTGGCGACGGGCGGCGCGCCGTGCCCCGCGTGCTCGTCGCCGGCGCACCAGGCGATCCGCATCATCTCGTAA

Protein

MPTSLFGELGGGGGLVEDQRAFKLALELSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSQIRASRKCGSAPPPPAGAPGHVTAQVRVPYRVVGLVVGPKGATIKRIQHTTHTYIVTPSREREPVFEVTGLPESVEAARKEIEAHIALRTGAGNAGPATPVDESEPLAQLYRAGIVSLLRPEQEAAFSSAGSCSSGGSSGRLGDLLGIWSSTERDEGLGESPSFESPGGAAGVWAWGPTRPSPSTSPARACGVCGERGVAAALVPCGHNLFCMECAQRLATGGAPCPACSSPAHQAIRIIS

Uniprot

A0A437B2U6   S4PYE6   H9JSC5   A0A2A4JTI8   A0A2W1BZQ9   A0A212EU46   + More
A0A2H1VRU1   B7FC52   A0A194RAD0   D6WAR8   A0A1B6EEP0   A0A1B6J8L9   A0A087ZRU8   A0A0L7RFF4   A0A154PBP4   A0A1Y1KD09   A0A158NEN4   A0A0C9QXX4   A0A1W4X6B3   A0A3L8D871   A0A1B0CKK8   A0A2H8TH39   J9JXW7   A0A0A9VXD8   A0A2S2PPB2   K7IVW2   A0A2S2Q5S8   A0A293LJF4   L7M442   A0A224YYF8   A0A131YBJ0   A0A1E1XIM4   V5G8B8   A0A336MAR2   A0A224YYK3   A0A2S2NKX3   A0A293N5E4   A0A2J7PHR0   A0A067RI01   A0A131XQC4   A0A147BCT5   A0A3S4QSP3   A0A1D2MFM7   A0A087UIY7  

Pubmed

23622113    19121390    28756777    22118469    26354079    18362917    + More
19820115    28004739    21347285    30249741    25401762    26823975    20075255    25576852    28797301    26830274    28503490    24845553    29652888    27289101   

EMBL

RSAL01000188    RVE44750.1    GAIX01003423    JAA89137.1    BABH01033686    NWSH01000666    + More
PCG74934.1    KZ149932    PZC77313.1    AGBW02012497    OWR44981.1    ODYU01003766    SOQ42944.1    AM423067    CAM28380.2    KQ460473    KPJ14459.1    KQ971312    EEZ99290.1    GEDC01000895    JAS36403.1    GECU01028295    GECU01012253    JAS79411.1    JAS95453.1    KQ414606    KOC69549.1    KQ434869    KZC09282.1    GEZM01088584    JAV58080.1    ADTU01013573    ADTU01013574    ADTU01013575    ADTU01013576    GBYB01000550    JAG70317.1    QOIP01000011    RLU16484.1    AJWK01016414    AJWK01016415    GFXV01001217    MBW13022.1    ABLF02035611    GBHO01042732    GDHC01010698    JAG00872.1    JAQ07931.1    GGMR01018626    MBY31245.1    GGMS01003319    MBY72522.1    GFWV01002125    MAA26855.1    GACK01005968    JAA59066.1    GFPF01011522    MAA22668.1    GEDV01012757    JAP75800.1    GFAC01000337    JAT98851.1    GALX01002101    JAB66365.1    UFQT01000315    SSX23128.1    GFPF01011521    MAA22667.1    GGMR01005212    MBY17831.1    GFWV01023575    MAA48302.1    NEVH01025133    PNF15869.1    KK852460    KDR23491.1    GEFM01006192    JAP69604.1    GEGO01006830    JAR88574.1    NCKU01003569    RWS07276.1    LJIJ01001416    ODM91796.1    KK120002    KFM77326.1   

Proteomes

UP000283053    UP000005204    UP000218220    UP000007151    UP000053240    UP000007266    + More
UP000005203    UP000053825    UP000076502    UP000005205    UP000192223    UP000279307    UP000092461    UP000007819    UP000002358    UP000235965    UP000027135    UP000285301    UP000094527    UP000054359   

PRIDE

H9JSC5   

Pfam

PF00013   KH_1

Interpro

IPR036612   KH_dom_type_1_sf        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR004088   KH_dom_type_1       
IPR004087   KH_dom       
IPR001841   Znf_RING       

SUPFAM

SSF54791   SSF54791       

Gene 3D

3.30.1370.10     3.30.40.10    

ProteinModelPortal

A0A437B2U6   S4PYE6   H9JSC5   A0A2A4JTI8   A0A2W1BZQ9   A0A212EU46   + More
A0A2H1VRU1   B7FC52   A0A194RAD0   D6WAR8   A0A1B6EEP0   A0A1B6J8L9   A0A087ZRU8   A0A0L7RFF4   A0A154PBP4   A0A1Y1KD09   A0A158NEN4   A0A0C9QXX4   A0A1W4X6B3   A0A3L8D871   A0A1B0CKK8   A0A2H8TH39   J9JXW7   A0A0A9VXD8   A0A2S2PPB2   K7IVW2   A0A2S2Q5S8   A0A293LJF4   L7M442   A0A224YYF8   A0A131YBJ0   A0A1E1XIM4   V5G8B8   A0A336MAR2   A0A224YYK3   A0A2S2NKX3   A0A293N5E4   A0A2J7PHR0   A0A067RI01   A0A131XQC4   A0A147BCT5   A0A3S4QSP3   A0A1D2MFM7   A0A087UIY7  

PDB

5WWW     E-value=1.61534e-32,     Score=348

KEGG

101741484    K15686 RNA-binding protein MEX3 [EC:2.3.2.27] | (RefSeq) RNA-binding protein MEX3D

GO

GO:0003723   GO:0005515   GO:0008270   GO:0003676   GO:0006281   GO:0043140   GO:0006310   GO:0000049   GO:0005975   GO:0004553  

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00063

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00083

outside

1  -  373

 

 

Pi

196.589984

Theta

162.456193

Tajima's D

-1.342508

CLR

1.88792

CSRT

0.0832458377081146

Interpretation

Uncertain