Gene

KWMTBOMO12387

Pre Gene Modal

BGIBMGA012407

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_RNF126-B_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr21(+):1843717-1850157      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.251

CDS

ATGGCTGACGCAATGGTAGAACGAAGACCAACACTACGGTTTTTCTGCCACAGGTGTGATATAGAATTTGAAGATGTTTTGCAGGATTATACATGCCCATATTGTGCTAGTGGTTTTATAGAGCAATTGGAGAGTGAAGCGGATGGTGATTTTGACGATGCAGATATGAGCAACTTGGACGATGATCGCCAGGCACCACCACCAATGCTTAACGATTTAGCATTCCTGATGACGGGAGGTCGGTACCGAAACACAGGTAGAAGAGATACAATCCTCGAACAGTTACTCTGGATGATGGGAGCCGGGAGGCCGGGCACTGGTGCTACAACTGCTGGTGCACCATTTGTACTTGTCGGAGCACCTGGAGACTATGTTTTTGGAGGAGAAGGCTTAGACGCAGTAGTAACACAACTTCTAGGCCAGTTGGAGAACTCAGGGCCTCCTCCTCTACCACGGGATCAGCTAGCCGCATTACCACAGGAGATACTCACGGAGGATCATGCTGCTAAAGGGACTGCTTGTTCAGTGTGCTGGGAAAATTTTGAAACAGGCGAGACAGTATCGCGGTTAGAATGTGAGCATCTGTTCCACTCGTCGTGTATCTCCCCGTGGCTGCAGCTACACGCCACCTGTCCCATCTGTCGGCGCTCGCTGCTCCCAGCAGATCCTCCGCCTGCCGATACTGAAGCCATCACCAATACCACAAGCACCACCACAGACACCACAGCCACCGCCACGACCCAGCAACCGCCGCTACCGCCCACGCAACCGCCCACGTCTACGGCCAGTAGTACTCCGTCAATAGCTTCAATCAATGCTCGGTCTGGTTTCGCGGCGGCGCTGCAGCAGATGATGCAGGCGACGGGCGCGCACGTGACGCTCTCGGGCTTCGACTCGGGCTCGTCGGGCTCCGGCTGGCCCGACACCTCGTCGTCGTCGCTCGGCTCGGACCGGTACAACATGGACATCGACTACGACTAA

Protein

MADAMVERRPTLRFFCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGGRYRNTGRRDTILEQLLWMMGAGRPGTGATTAGAPFVLVGAPGDYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDHAAKGTACSVCWENFETGETVSRLECEHLFHSSCISPWLQLHATCPICRRSLLPADPPPADTEAITNTTSTTTDTTATATTQQPPLPPTQPPTSTASSTPSIASINARSGFAAALQQMMQATGAHVTLSGFDSGSSGSGWPDTSSSSLGSDRYNMDIDYD

Uniprot

A0A437B2X1   A0A2W1BQF0   A0A2H1VQ19   A0A212EZB2   A0A2A4JHV4   A0A194PUU1   + More
A0A0L7QMX0   A0A1B6D121   A0A2J7PHT7   A0A067RI73   A0A2J7PHU5   E2BVT0   A0A1Y1KQ29   V9IDM3   A0A2A3EFE2   A0A1A9VCU4   A0A1B0AZS2   D6X4W3   A0A1B6GQF6   D3TQ03   A0A1B6HEN0   A0A1B6IN65   A0A1B6IFD1   A0A1A9ZHX9   A0A1B0GDF4   A0A087ZU68   A0A139WAP3   A0A1A9WGV2   A0A161MRW6   A0A0K8TSJ8   A0A146MDJ9   T1PKN6   A0A2S2R5Z4   A0A1I8PTM9   A0A3Q1JUT8   A0A3B3D8T8   A0A3P8NLS4   A0A3P9BU08   A0A3Q2VKB9   A0A0A9WXJ3   A0A3B5KQN8   A0A3P9K4T8   A0A3Q4I7B5   A0A3P9JTG6   E9GKW5   J9JVP0   A0A3B4H1P3   A0A0P5WUZ3   A0A3P8SGM9   A0A0P6DI27   A0A0P5APD4   H3CZ75   A0A336MDW7   A0A336MH14   A0A3B4AX80   M4ADC1   A0A3Q3MM10   A0A1S3T5D3   A0A452G360   A0A2H8TF42   A0A3Q3MLZ2   A0A287B0T0   A0A2U4A1A1   A0A1W4XGW2   A0A384A4N7   A0A2Y9SAA2   A0A340XJG7   A0A3B3ZYM6   A0A1J1I1T4   A0A3B3DAI7  

Pubmed

28756777    22118469    26354079    24845553    20798317    28004739    + More
18362917    19820115    20353571    26369729    26823975    29451363    25186727    25401762    21551351    17554307    21292972    15496914    25463417    23542700    30723633   

EMBL

RSAL01000188    RVE44752.1    KZ149932    PZC77312.1    ODYU01003766    SOQ42941.1    + More
AGBW02011326    OWR46820.1    NWSH01001364    PCG71541.1    KQ459591    KPI97087.1    KQ414868    KOC59968.1    GEDC01017917    JAS19381.1    NEVH01025133    PNF15902.1    KK852460    KDR23497.1    PNF15901.1    GL450957    EFN80208.1    GEZM01076955    JAV63519.1    JR040647    JR040648    AEY59223.1    AEY59224.1    KZ288260    PBC30440.1    JXJN01006453    KQ971381    EEZ97228.2    GECZ01028056    GECZ01005149    JAS41713.1    JAS64620.1    EZ423505    ADD19781.1    GECU01034502    JAS73204.1    GECU01019348    JAS88358.1    GECU01022060    JAS85646.1    CCAG010011872    KYB24961.1    GEMB01001230    JAS01919.1    GDAI01000512    JAI17091.1    GDHC01001813    JAQ16816.1    KA645609    KA649306    AFP60238.1    AFP63935.1    GGMS01016212    MBY85415.1    GBHO01031488    JAG12116.1    GL732550    EFX79749.1    ABLF02034914    ABLF02034921    GDIP01081306    JAM22409.1    GDIQ01077304    JAN17433.1    GDIP01199644    JAJ23758.1    UFQS01000755    UFQT01000755    SSX06647.1    SSX26993.1    UFQS01000940    UFQT01000940    SSX07879.1    SSX28113.1    LWLT01000004    GFXV01000922    MBW12727.1    AEMK02000022    DQIR01031346    HCZ86821.1    CVRI01000038    CRK94171.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053268    UP000053825    UP000235965    + More
UP000027135    UP000008237    UP000242457    UP000078200    UP000092460    UP000007266    UP000092445    UP000092444    UP000005203    UP000091820    UP000095300    UP000265040    UP000261560    UP000265100    UP000265160    UP000264840    UP000005226    UP000265180    UP000261580    UP000265200    UP000000305    UP000007819    UP000261460    UP000265080    UP000007303    UP000261520    UP000002852    UP000261640    UP000087266    UP000291000    UP000008227    UP000245320    UP000192223    UP000261681    UP000265300    UP000183832   

Pfam

PF13639   zf-RING_2        + More
PF14369   zinc_ribbon_9

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR039525   RNF126-like_zinc-ribbon       
IPR039572   RNF126       
IPR039571   RNF126_RING-H2       

Gene 3D

3.30.40.10    

CDD

cd16801  RING-H2_RNF126

ProteinModelPortal

A0A437B2X1   A0A2W1BQF0   A0A2H1VQ19   A0A212EZB2   A0A2A4JHV4   A0A194PUU1   + More
A0A0L7QMX0   A0A1B6D121   A0A2J7PHT7   A0A067RI73   A0A2J7PHU5   E2BVT0   A0A1Y1KQ29   V9IDM3   A0A2A3EFE2   A0A1A9VCU4   A0A1B0AZS2   D6X4W3   A0A1B6GQF6   D3TQ03   A0A1B6HEN0   A0A1B6IN65   A0A1B6IFD1   A0A1A9ZHX9   A0A1B0GDF4   A0A087ZU68   A0A139WAP3   A0A1A9WGV2   A0A161MRW6   A0A0K8TSJ8   A0A146MDJ9   T1PKN6   A0A2S2R5Z4   A0A1I8PTM9   A0A3Q1JUT8   A0A3B3D8T8   A0A3P8NLS4   A0A3P9BU08   A0A3Q2VKB9   A0A0A9WXJ3   A0A3B5KQN8   A0A3P9K4T8   A0A3Q4I7B5   A0A3P9JTG6   E9GKW5   J9JVP0   A0A3B4H1P3   A0A0P5WUZ3   A0A3P8SGM9   A0A0P6DI27   A0A0P5APD4   H3CZ75   A0A336MDW7   A0A336MH14   A0A3B4AX80   M4ADC1   A0A3Q3MM10   A0A1S3T5D3   A0A452G360   A0A2H8TF42   A0A3Q3MLZ2   A0A287B0T0   A0A2U4A1A1   A0A1W4XGW2   A0A384A4N7   A0A2Y9SAA2   A0A340XJG7   A0A3B3ZYM6   A0A1J1I1T4   A0A3B3DAI7  

PDB

2ECT     E-value=6.92362e-14,     Score=187

KEGG

101739542    K11982 E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase R

GO

GO:0016874   GO:0061630   GO:0030433   GO:0006511   GO:0005737   GO:0016567   GO:0070534   GO:0043162   GO:0051865   GO:0042059   GO:0070936   GO:0005829   GO:0005515   GO:0008270   GO:0016021   GO:0006260   GO:0006281   GO:0043140   GO:0006310   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR15710:SF21  

Length:

326

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19402

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04944

outside

1  -  326

 

 

Pi

203.16016

Theta

171.666119

Tajima's D

0.571892

CLR

0.006942

CSRT

0.532173391330434

Interpretation

Uncertain