Gene

KWMTBOMO12383

Annotation

PREDICTED:_ral_GTPase-activating_protein_subunit_beta-like_[Bombyx_mori]

Location

Bomo_Chr21(-):1780196-1794116      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.829 PlasmaMembrane   Reliability : 1.578

CDS

ATGAATGTGGGAATCTTCAACAGAGTTAATCATAAAGATAAAGATAGTGACGGGATGTATGCAGAATGGAGCTCAATACCACTGGAGGGTGGGGGACAAGGAGTACTGGGAGCAGTTGGAGGCCGAGATGTTGTACTGGCAGTTGTGAAACAATTGAGCTCCCCTGATCCTAGTCCTTTAACTACTGATGCTGAGGTGGAGTGGGTTCTAGAAGTGATCAGATATGGTTTGTCACTGCCACTGAGCGAGCACAGTGCTGTACGGGATTGCGTGCGTGTCGCGTGTGCTTGGTTGACCCCACTACTGGCTCCCACTCCCGCCGCGCAACCCACCCCCCCAGCTCTTCCTCCACCCGTAGTCGCCGAGCCACACAGATACGCAAGGAAGATACTGCGCCACCTACAAAACTTGTTTGTTCCAAGACCAGACGAAAGTGGCGACTTGATCAGCAAACAAGCAGTTCTGTGCCACCGCGTGCTCCGACTGGCGCGTGCTCTGGCGGACGGGGGCGCGCTGGGCGGCGCGGAGTGGAAGGCGTTGCTGTTGCTGCTGCTGGCCGCCGCTGCAGCCCTACTGGCGCCGCCGGTGCCTCCACCGCCCCCGTTCCACGCCGCAGCGATCTTTCAGCTCTGCGACCGCGTGCTCTCCGTTCTATTTGAAGTTTGGTTGGTGGCGTGTCACCGAAGTTTCCCGGGCCCCGCGCTGTGGCGTACATTGCGCGAGCAGTGCCTGCGTTGGCGGCACCGCGACCTGCTCACCAAGCATTGGACGCGCGCCTCGCTGTGCCTCACCGCGAGACTACTGAACAATCTGTATGGTCCACACTTCCCAGCCGTGCCCATCAGCGAAGAAGACGCGAACCTGGTCCCTGCGGACATGAGTCCAGAAGCGGTAATGCAAAGCTGGTATCGGATCTTGCACACGATTGGCAACCCTGTAGACTTGTGTCGACCGCGCGTCATCAGTCAAACTCCAGAATTTTTGCAGTACTCAATAACTCAAGAAGAAGGTGGTCGAGAGCCTAGCCAGCATCCATGCTTGGAAGTCCTCCCTCACATCTTTCATCAAGCAATGAAGGGTGTGGCAGCACATGTCGATGCCTTTCTAGGGCGGGGCCGCGAAGAGCGCTGGGTGTCGGGGGGCGCGGGCGGGGCGGGCGCGGGGGAGGAGCCGCCCGACGACTTCACGCCGCCCGCCCACCGCCGGCTCGCCAAGTCGTTCAGCGTCTCCGCGCCCAAACCCAAGGACAGGATACCGGAGAAAAGTACCCCTCGTACCTCCCTCATCGGCTTGAGCAGTTCGAGCAGCCGTCCACCGAGCATCGCGCCCACCACTCCGCCCAATTCTATCACTTCACAAGTGGCCGAAACGGAAAAGCCTCCCCTCACACCGTTACGTCCCAAAGTAAACTCCATCTTCCATTTATTTGGGGAGTGGCTCTTCGAGGCGGCCCTCATAGGAACCTCGGCTAACTACAACACGCAGCGTAGGCTGTGA

Protein

MNVGIFNRVNHKDKDSDGMYAEWSSIPLEGGGQGVLGAVGGRDVVLAVVKQLSSPDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSAVRDCVRVACAWLTPLLAPTPAAQPTPPALPPPVVAEPHRYARKILRHLQNLFVPRPDESGDLISKQAVLCHRVLRLARALADGGALGGAEWKALLLLLLAAAAALLAPPVPPPPPFHAAAIFQLCDRVLSVLFEVWLVACHRSFPGPALWRTLREQCLRWRHRDLLTKHWTRASLCLTARLLNNLYGPHFPAVPISEEDANLVPADMSPEAVMQSWYRILHTIGNPVDLCRPRVISQTPEFLQYSITQEEGGREPSQHPCLEVLPHIFHQAMKGVAAHVDAFLGRGREERWVSGGAGGAGAGEEPPDDFTPPAHRRLAKSFSVSAPKPKDRIPEKSTPRTSLIGLSSSSSRPPSIAPTTPPNSITSQVAETEKPPLTPLRPKVNSIFHLFGEWLFEAALIGTSANYNTQRRL

Uniprot

A0A2A4JHL1   A0A2H1WA00   A0A194RB09   A0A2W1BQM4   A0A3S2L1M2   A0A194PVR4   + More
A0A2J7PS83   A0A2J7PS81   A0A088ANE6   E2AUV9   A0A2A3ED95   A0A1B6LSA7   A0A1B6FYJ1   A0A067RK62   A0A0N1IT18   A0A0C9RA13   A0A0L7RGR3   A0A151JC06   A0A154PB09   A0A1B6MEL0   A0A1B6L443   A0A1B6D853   A0A1B6CX62   A0A158NRE5   A0A0T6AVE8   A0A212EZF5   A0A1Y1MDW0   A0A0K8S4E1   A0A0K8S613   A0A1B6MVD2   A0A0A9X2K6   D2A265   A0A1Y1MFT6   A0A1Y1MBJ0   A0A2H8TMA6   A0A232EVG5   A0A0A9ZCW2   A0A2S2QIR1   E2BVH8   A0A195FKP4   A0A2S2R3X2   A0A1B6K1C8   A0A2J7PS97   J9JWG7   N6TRH2   A0A1W4X266   A0A1W4XCZ0   A0A1W4X2A4   A0A146LGW4   A0A2H8TXZ1   A0A2H8TQC6   A0A151XI57   A0A1W4XBM7   A0A2P6L2V5   A0A151IFS4   A0A2S2NBA8   A0A2S2NQ73   T1JGQ1   U4UUE1   A0A0J7NPF2   E0VQJ7   A0A087UJA6   A0A1B6HFA9   B0W5Q0   A0A0M4DZC9   A0A0M4EDQ9   A0A1Q3FD58   A0A2M4A9E8   A0A453YTJ1   A0A195BFG5   A0A2M3Z0Z3   W5J6S7   A0A1D2NBX9   A0A2T7PG13   Q7PN19   A0A1B0D4J4   A0A0K2UWE0   A0A2M4B944   A0A2M4B8Z6   A0A2M4B917   W8B919   A0A1Q3FDF3   A0A1I8MMX3   A0A034VA45   A0A182HV79   A0A034V9G8   A0A034V7C9   A0A0A1XG88   A0A1Y9G8G0   A0A1J1INQ4   A0A182SUE6   W8AXX1   W8ALP7   A0A0L0C2G0   B4ND23   A0A240SWL3   C3ZKQ9   A0A1A9UMW0  

Pubmed

26354079    28756777    20798317    24845553    21347285    22118469    + More
28004739    25401762    18362917    19820115    28648823    23537049    26823975    20566863    12364791    20920257    23761445    27289101    24495485    25315136    25348373    25830018    26108605    17994087    18563158   

EMBL

NWSH01001364    PCG71537.1    ODYU01007280    SOQ49915.1    KQ460473    KPJ14465.1    + More
KZ149932    PZC77308.1    RSAL01000244    RVE43599.1    KQ459591    KPI97083.1    NEVH01021938    PNF19197.1    PNF19198.1    GL442898    EFN62767.1    KZ288292    PBC29189.1    GEBQ01013386    JAT26591.1    GECZ01014515    JAS55254.1    KK852424    KDR24182.1    KQ435944    KOX68194.1    GBYB01003656    JAG73423.1    KQ414596    KOC70045.1    KQ979122    KYN22519.1    KQ434864    KZC08997.1    GEBQ01005589    JAT34388.1    GEBQ01021509    JAT18468.1    GEDC01015468    GEDC01001645    JAS21830.1    JAS35653.1    GEDC01019271    GEDC01016848    JAS18027.1    JAS20450.1    ADTU01023841    ADTU01023842    LJIG01022743    KRT78948.1    AGBW02011326    OWR46824.1    GEZM01035527    JAV83198.1    GBRD01017661    JAG48166.1    GBRD01017662    JAG48165.1    GEBQ01000097    JAT39880.1    GBHO01029703    JAG13901.1    KQ971338    EFA02746.2    GEZM01035531    JAV83195.1    GEZM01035526    JAV83199.1    GFXV01001080    GFXV01003364    MBW12885.1    MBW15169.1    NNAY01002015    OXU22305.1    GBHO01001848    JAG41756.1    GGMS01008388    MBY77591.1    GL450851    EFN80302.1    KQ981522    KYN40569.1    GGMS01015420    MBY84623.1    GECU01002461    JAT05246.1    PNF19199.1    ABLF02033886    APGK01022612    KB740436    ENN80658.1    GDHC01011278    JAQ07351.1    GFXV01006984    MBW18789.1    GFXV01004540    MBW16345.1    KQ982117    KYQ59900.1    MWRG01002225    PRD32921.1    KQ977771    KYM99990.1    GGMR01001885    MBY14504.1    GGMR01006711    MBY19330.1    JH432211    KB632373    ERL93775.1    LBMM01002783    KMQ94370.1    DS235430    EEB15653.1    KK120066    KFM77445.1    GECU01034282    JAS73424.1    DS231844    EDS35703.1    CP012523    ALC37916.1    ALC38080.1    GFDL01009521    JAV25524.1    GGFK01004078    MBW37399.1    AAAB01008964    KQ976504    KYM82910.1    GGFM01001400    MBW22151.1    ADMH02001962    ETN60162.1    LJIJ01000105    ODN02585.1    PZQS01000004    PVD32368.1    EAA12904.5    AJVK01003262    AJVK01003263    AJVK01003264    AJVK01003265    AJVK01003266    HACA01025217    CDW42578.1    GGFJ01000405    MBW49546.1    GGFJ01000404    MBW49545.1    GGFJ01000403    MBW49544.1    GAMC01016884    JAB89671.1    GFDL01009465    JAV25580.1    GAKP01020524    JAC38428.1    APCN01002500    GAKP01020527    JAC38425.1    GAKP01020528    JAC38424.1    GBXI01004331    JAD09961.1    CVRI01000054    CRL00726.1    GAMC01016887    JAB89668.1    GAMC01016885    JAB89670.1    JRES01000986    KNC26436.1    CH964239    EDW82732.2    GG666638    EEN46908.1   

Proteomes

UP000218220    UP000053240    UP000283053    UP000053268    UP000235965    UP000005203    + More
UP000000311    UP000242457    UP000027135    UP000053105    UP000053825    UP000078492    UP000076502    UP000005205    UP000007151    UP000007266    UP000215335    UP000008237    UP000078541    UP000007819    UP000019118    UP000192223    UP000075809    UP000078542    UP000030742    UP000036403    UP000009046    UP000054359    UP000002320    UP000092553    UP000078540    UP000000673    UP000094527    UP000245119    UP000007062    UP000092462    UP000095301    UP000075840    UP000069272    UP000183832    UP000075901    UP000037069    UP000007798    UP000092443    UP000001554    UP000078200   

Pfam

PF02145   Rap_GAP        + More
PF16399   Aquarius_N
PF13086   AAA_11

Interpro

IPR035974   Rap/Ran-GAP_sf        + More
IPR039930   RALGAPB       
IPR016024   ARM-type_fold       
IPR000331   Rap_GAP_dom       
IPR032174   Aquarius_N       
IPR041677   DNA2/NAM7_AAA_11       
IPR027417   P-loop_NTPase       

SUPFAM

SSF111347   SSF111347        + More
SSF48371   SSF48371       
SSF52540   SSF52540       

Gene 3D

3.40.50.11210    

ProteinModelPortal

A0A2A4JHL1   A0A2H1WA00   A0A194RB09   A0A2W1BQM4   A0A3S2L1M2   A0A194PVR4   + More
A0A2J7PS83   A0A2J7PS81   A0A088ANE6   E2AUV9   A0A2A3ED95   A0A1B6LSA7   A0A1B6FYJ1   A0A067RK62   A0A0N1IT18   A0A0C9RA13   A0A0L7RGR3   A0A151JC06   A0A154PB09   A0A1B6MEL0   A0A1B6L443   A0A1B6D853   A0A1B6CX62   A0A158NRE5   A0A0T6AVE8   A0A212EZF5   A0A1Y1MDW0   A0A0K8S4E1   A0A0K8S613   A0A1B6MVD2   A0A0A9X2K6   D2A265   A0A1Y1MFT6   A0A1Y1MBJ0   A0A2H8TMA6   A0A232EVG5   A0A0A9ZCW2   A0A2S2QIR1   E2BVH8   A0A195FKP4   A0A2S2R3X2   A0A1B6K1C8   A0A2J7PS97   J9JWG7   N6TRH2   A0A1W4X266   A0A1W4XCZ0   A0A1W4X2A4   A0A146LGW4   A0A2H8TXZ1   A0A2H8TQC6   A0A151XI57   A0A1W4XBM7   A0A2P6L2V5   A0A151IFS4   A0A2S2NBA8   A0A2S2NQ73   T1JGQ1   U4UUE1   A0A0J7NPF2   E0VQJ7   A0A087UJA6   A0A1B6HFA9   B0W5Q0   A0A0M4DZC9   A0A0M4EDQ9   A0A1Q3FD58   A0A2M4A9E8   A0A453YTJ1   A0A195BFG5   A0A2M3Z0Z3   W5J6S7   A0A1D2NBX9   A0A2T7PG13   Q7PN19   A0A1B0D4J4   A0A0K2UWE0   A0A2M4B944   A0A2M4B8Z6   A0A2M4B917   W8B919   A0A1Q3FDF3   A0A1I8MMX3   A0A034VA45   A0A182HV79   A0A034V9G8   A0A034V7C9   A0A0A1XG88   A0A1Y9G8G0   A0A1J1INQ4   A0A182SUE6   W8AXX1   W8ALP7   A0A0L0C2G0   B4ND23   A0A240SWL3   C3ZKQ9   A0A1A9UMW0  

KEGG

101739242    no KO assigned | (RefSeq) ral GTPase-activating protein subunit beta-like

GO

GO:0005096   GO:0051056   GO:0016021   GO:0090630  

PANTHER

PTHR21344  

Length:

498

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.61918

Exp number, first 60 AAs:

0.00722

Total prob of N-in:

0.08554

outside

1  -  498

 

 

Pi

183.851244

Theta

150.185048

Tajima's D

0.374493

CLR

0.06756

CSRT

0.472726363681816

Interpretation

Uncertain