SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12372  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012397
Annotation
Serine/threonine-protein_kinase_RIO2_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.791 Nuclear   Reliability : 1.594
 

Sequence

CDS
ATGGGTAAACTCGACGTAGCTATATTACGTTACTTAACGGGTGAAGACTTTCGAGTTCTAACTGCAGTAGAAATGGGCATGAAGAATCATGAGTTGGTTCCTGGATCGCTTGTTGCATCCATAGCAAATTTGAGACATGGTGGCGTTCACAAACTAATGAAAGAACTATGTAAACATAGATTACTAACTTATGAACGAGGAAAGCAGTATGATGGTTATAGACTCACAAATGCTGGCTATGACTATCTAGCACTGAAAGCATTGGCCAACAGGAAAGTGATATCGTCATTTGGAAATCAAATTGGTGTTGGTAAAGAGTCTAACATCTACATTGTAGCTGATGAAGATCACAATCCGCTCTGTTTGAAACTTCATAGATTAGGAAGGACATGTTTCCGAAACATTAAAGACAAGCGTGATTACCATGCACACAGAAATCGAGCTTCATGGTTGTATTTGTCTAGAATATCAGCTACGAAGGAATTCGCATACATGAAGGCTCTATATGATCGAGGATTTCCAGTACCAAAACCAATAGACTTCAATAGACATTGTGTTATAATGGAGCTTGTGCGTGGAGGACCTCTGACTCATGTGACTTCAGTGGCTGACCCAGAAGCCCTATATGATGAACTTATGAACCTGATTGTCCGACTCGGTAACTGTGGTGTAATCCATGGAGATTTCAATGAGTTTAACATCATGATTGATGAGGATAACCATCCTGTTATCATTGATTTCCCACAGATGGTGTCCACATCTCACCCTAATGCTGAAGTGTACTTCGAGCGCGACGTCCGGTGCGTGCGCGAGTTCTTCAAGCGCCGGTTCGGGTTCGAGAGCTCGCTGTACCCGGCGCTGCGGGACCTGCGCCGCGCCGAGCGCCTGGACGCCGCCGTGGCCTGCTCGGGGTACCGCCGCGCCGAGGACCTGGACGACCGGCTCATGCGGGAAATGGGTATTGGTCTGGAAGAGAGCGACGACGATGAGTCGGACGAGGAGTTTGCAGACGCGGTAGACGAGAGGAGCCCCGCCTATACTGACGAGGAACTAGCGGCCCTCAGGCAGCAGGTGGACATTTCAATACAGAACGACAAACGCAACGACGTCATCGACAACCTTACTACAAAGACCGTCACACTCCATATTACGGAAGAGAACAAATCCGAAGCAGAAGAAGTACCGACTCTCGTTAAAGCGGAGGAGGAGGCTGAAGAAGTCACGTGCACAGAAGACACTGATAAAGTAGGAGAATTGAATAAGAACTCGCAGAAGTATCGACTGGCGATGATTGAGAAGGCGTTGTCCGATGTGAGGTCGATGAGATCCGACACGTCCGCCAGCACGATAGCCCCGGCTGTCGTCAAACTGCAGGTGAAGAAGAATCTGGAACAGCGACAAAAGAAGATGGAGAGGAAGAAGGCCGTAGCGAAGGGAGAGGCCAGCGCCGTCACCAGGAGCCGGAGGGACAACTCCGAGACCATCAGGGAGAGCCACGGCTTGTGGGGCTGGGACGAATAG
Protein
MGKLDVAILRYLTGEDFRVLTAVEMGMKNHELVPGSLVASIANLRHGGVHKLMKELCKHRLLTYERGKQYDGYRLTNAGYDYLALKALANRKVISSFGNQIGVGKESNIYIVADEDHNPLCLKLHRLGRTCFRNIKDKRDYHAHRNRASWLYLSRISATKEFAYMKALYDRGFPVPKPIDFNRHCVIMELVRGGPLTHVTSVADPEALYDELMNLIVRLGNCGVIHGDFNEFNIMIDEDNHPVIIDFPQMVSTSHPNAEVYFERDVRCVREFFKRRFGFESSLYPALRDLRRAERLDAAVACSGYRRAEDLDDRLMREMGIGLEESDDDESDEEFADAVDERSPAYTDEELAALRQQVDISIQNDKRNDVIDNLTTKTVTLHITEENKSEAEEVPTLVKAEEEAEEVTCTEDTDKVGELNKNSQKYRLAMIEKALSDVRSMRSDTSASTIAPAVVKLQVKKNLEQRQKKMERKKAVAKGEASAVTRSRRDNSETIRESHGLWGWDE

Summary

EMBL
BABH01033164    NWSH01000093    PCG79646.1    KZ149932    PZC77299.1    ODYU01000575    + More
SOQ35577.1    KQ459591    KPI97075.1    KQ460473    KPJ14474.1    GAIX01005036    JAA87524.1    RSAL01000066    RVE49383.1    PCG79647.1    AGBW02011192    OWR47076.1    UFQT01000046    SSX18855.1    GDAI01000635    JAI16968.1    KK107965    QOIP01000001    EZA47059.1    RLU26936.1    KK852409    KDR24481.1    NEVH01006750    PNF36562.1    GAMC01012884    JAB93671.1    KQ978625    KYN29638.1    KQ981490    KYN41147.1    GBXI01000195    JAD14097.1    KQ977444    KYN02633.1    GFDL01014003    JAV21042.1    KZ288260    PBC30437.1    GAHY01000425    JAA77085.1    ACPB03012671    GL888387    EGI61783.1    CH964272    EDW84849.1    GDHF01000898    JAI51416.1    GAKP01015564    JAC43388.1    CH902617    EDV41593.2    KA648517    AFP63146.1    AXCN02001528    BT083465    ACR23643.1    AE014297    AAF56435.1    GECL01002257    JAP03867.1    GDKW01000254    JAI56341.1    CH933806    EDW13793.2    GBGD01001147    JAC87742.1    CH954182    EDV53702.1    GBBI01001369    JAC17343.1    GFTR01006902    JAW09524.1    DS232266    EDS38770.1    GFXV01003499    MBW15304.1    KQ435728    KOX77803.1    GECU01009972    JAS97734.1    KQ982080    KYQ60368.1    ABLF02022093    JXJN01007968    GEDC01018934    JAS18364.1    OUUW01000008    SPP84327.1    GL436576    EFN71778.1    CP012526    ALC47763.1    GGMS01007709    MBY76912.1    GBHO01006310    GBRD01004604    JAG37294.1    JAG61217.1    GDHC01016938    JAQ01691.1    GDHF01001305    JAI51009.1    PNF36561.1    GECZ01015594    JAS54175.1    GFDF01006455    JAV07629.1    AJVK01027389    LBMM01000250    KMR02967.1    GFDF01006667    JAV07417.1    GFWV01022751    MAA47478.1   
Pfam
PF09202   Rio2_N
Interpro
IPR018935   RIO_kinase_CS        + More
IPR036388   WH-like_DNA-bd_sf       
IPR036390   WH_DNA-bd_sf       
IPR000687   RIO_kinase       
IPR015285   RIO2_wHTH_N       
IPR011009   Kinase-like_dom_sf       
IPR030484   Rio2       
SUPFAM
SSF46785   SSF46785        + More
SSF56112   SSF56112       
Gene 3D
PDB
6FDN     E-value=8.67366e-122,     Score=1119

Ontologies

Topology

Length:
506
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00560999999999998
Exp number, first 60 AAs:
0.00435
Total prob of N-in:
0.00160
outside
1  -  506
 
 

Population Genetic Test Statistics

Pi
146.498932
Theta
164.842177
Tajima's D
-0.422543
CLR
0.25698
CSRT
0.255337233138343
Interpretation
Uncertain
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