SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12367
Pre Gene Modal
BGIBMGA012369
Annotation
PREDICTED:_probable_GPI-anchored_adhesin-like_protein_PGA55_[Bombyx_mori]
Location
Bomo_Chr21(-):1453852-1483766      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.239 PlasmaMembrane   Reliability : 1.736
 

Sequence

CDS
ATGACAGTGAGTAGTGCTTTGTCACAATCGACACAAAGCACGGCCAATGACGAAAAGCTCTCCAGATACAACGGATTAAATCAAACGTCGTGGATTCGTAGCTCTGATGCATCGAATGAACTGAACCCTAAGGACAACTCCGAAGAGCATACAGACAAAAACGCTAAATACAAAGACAGGGGAAGGATCAAATTTCATTCTCTTTTCAAATCGACTACAGCAAGTCCGTTGCGCAAAGCAAGTTCTACAGAGTCAGGCGATTTTGTAATAGTGACGCCAGCAACGGAAATAAAAAAAACATCAAGATATACAGAAGTTGCTAAAAGTGCTAAAAAAGACAATTCTCCTGTTAGTAGTACGACACCGGTTGCTGTAAAAAATGGAGAAGAGAGCATTGAAGAATATGATGACGAAGACGAGGAAGAAGAAAGGGAAACGCTGCAAAAGTTTTCTTCGAACAAATTCCATGAAAGCTTTTTTAAAATACCGAGCTTCGGCGACGACAACAACGAGAGTTCCAACAATAAAGTAAGAGAAGATTTCAGCAGTCCCTCCTATGGATTTTCTAGTTTCTTCCCAAAAGAAACTTCATTCGGCTATGGGCACAATGATAACAAAAATAATTTCAAATCGGAAAGTTTCTTTGATTTCGACAGTGATCTGACTACGCCGAAGAACGATTTCTTTGATAAAAAATACCAAGAGATCTCAGGTAGTATTATAAAAAAATTAGAAACTATTAAAGCTAAATCTCCACCGCCTAACATCACTAATGTACACAAGATCGTCAAAGAGAATGTTGGCCTAGAGAGGTTAGGGAATAACACACCGACTAACAAATCTACTGTTTTCATAAAAAATACCAAAGAGATACGTGTTTTAGACAACGAAGGAGCTGGTAGTGCTAACGAACAATTATCAGATGTACACGGCACCAGTATTTATTATGAAATGTCTGTACTGTCAACAGAAACCTACGCGATCAATCATTCTAATGATGATGATTGTGATAATGATACGTTACCAGCAGAACCCACCATGAGCACATCATCTGAAGAAGAATTGGCATCAATAAAAACAACTACGCCGACACCGATTCAAGTTTCTACTAGACCACCGTTTCCAGATCCAACAGTTGAAAACGTCTCAACGCTTTCATCAAATTACGTGCCCATTTCGACTGCTTTGCCAATATTTAACTCAATAATTCCGGTTTCGACGCAAAACTACATATCTTCAACAGAGAGAGTAACCAGAGTATTCTCAAGCAGTTTTAGTAGGAACAGAAATTACTCAAAGAGGCTTAATCTGAACGGTGTTAATGATTCACCAAATAGTGTGACATTGAAGACCGGCACATCAACTCATAAACCTCTAACTAGGAAGTTCCACTACACTACACAACGAGTCAGGCCAGTTTGGATGGCACCAAAAAGAAATGTTACCAAGCCAGCTTATCAGCGTCTGACGACTCCGACAACGATTTACTCGGAGCATTTCAACATCAAAGACAAATATACAACTACACCCAGACCGCGGCCGTCTAATAAAGTAACACTTACTACAGTCACGTCTGAAATAGACCCTGTGCTTCAAAGTGATGTAGGGGGCTTCAAAAAAGTGGTACACTCTCATTCAATATCCGATAATACGATTCCATCATTATGGAAAAGGGGATCCACAAAGTATAGAACATCAACTGCCACTTCAGACGAAGTTTCTAATGTGAGTGAAATGGAAATACCACCTACTTCTATAGTGTGGGCTCTGGCTAGCTTACGAAGCCCCTCCAGAAACTCAACAGGGTACAAAACTGACGACGAAAATGAGTTACAAAAAGTAGGAGAATTATTAGAAAAGAATGAAACAAAAACATCGACGACCACGATTGCAACAACCATGGAAATCAGCGAAGATATTACTAATAAAACAATAACAGAAGTTGAACAAAATAAACTTCCTTGGCAGTCTGTGCAAGCTTCGACACCACCCATCAACGACATGCAAAACGAAACCATTATAGAAAATAAAACAGAAAGGGTCACAGCTGAAAGCAATATTTCAGTTCAGAGCAGCCCCGAACCAAGTACCACGGAGACGGACACCACTAAGTCAACCACTAAAGCATTCAAACCGGCTTGGGTTTCAGCTACAACAGAAACGGAACAAAATATGACGGAAAAAGATAATCTTGTCATTAAAAGAGGTTTTGAATCGATTACGAAATTACCTTCAGGGATAACTACACCACAAGACGAAACGGAAGATTTGAACCAAATTACGACAAAAACGCCAAAAACAAGAGATGATTTTGAAATAACAACAATCAGATTTTCGTACGTACCGACACAGACGACGGAGACGCCTGACGATTCGGAGTATGAGTTAACAACCTTCAATTGGCGGCCAGTATTTCCTACTAGAACCCAAGCGACAACTATAAAAGATGAGCCAATAACCACGTATCGTCCTAAGTTTATAACAACAACTGAGCTTCTAGAGGAATCTACTACTGTAGAAGATACAACACCTCCCGTAATAGAATTATCTTCTCATATTATTGAGAACGCAACAGAAGATATTGTCCAAACTACTGATATAAATGAACCTACTATTGTATCAACTAAAGCTATTGAAATTAATAAAGCTACCACTATACCTAATAAAATTACTGAAAATATTAAAACTACTACTATTTCTGCAACAACTGAAATTAATGAGCCTACTACAATTAAAACTACAACTACTGAAATTAATAAACCTTATAGTATGAAAACTAAAATTACTGAATTTATTGAACCTACTGTTGTATCAACCACAACTACTGAAATTAATGAACCTTATACTACCCCAACTACTCAAGTTCCTACAACCAAACAAATCACTACCGAAACCAGTACCACTACTACCACTGAAGCAGCCACTGAAGATGTAAGTGAAACACTCCCAATCACAGTTACAAAAACAATCACAACGTCAACAACCACTTCACCTACAACAACTATGACGACAACACCTCTAGAAGACACCACAACGATTATTATAGAAGTGGTAACTGAAATAAATACAGAAAAAGAACGTACCATAACTGCTCCAATGCCAACTGAAACACCAAAACCAACTGCCGAATACACTTCAGAAAATATAGATGATAATGAAGTGATAGATCAAACTACCGCTCCGAGCATGCCGTCTGTTGCACCGACTATAGTTGTATCCACATCAAAAGTACCAATTTGGACTACTACAACTGCAGCAATAGAATATACTACTGAAGCCGTGGAGACTTCACAAGAGAACGGTAAAATAGTATCCAGCACTGATAGCGAAATGGAAACGACAAGGGCCGTGAGCGATTTAGAGGATCTGACCAGTTACGCCGGTGAAATGACCACGGAAGCTTCCTCGAGGGTTCTGAATTCGGAGGACAGTGGAACAGGAGTAGCTGTCGCTATAGCCGTCAGCACCATCGGGGTCATCGCTTTGGTTCTGCTCATTGCATTGTTGCTTGTGGTTCGCCGTCGGGGCAGGAGAGGTATATACGCTCAGAGATGTACTCCTGTCTCGTTGGACGCATACAGTTTGGACAGTGTCAGTGTCGGGCACAGGAAGGGAAACCAGCGGCTGAGGGCCAGTAAGCGCAGTTACGGTAACCCTGCTTATGATGATGAGGTCACTTCTCATCCAATGCAGTACTCGGCGTTAGCTTCTTTCGCAATGGACATAGAATCTATAACGGCCGAATTCGTCGAGATACCATCGGTATCCGTGAGACCTGAGGAGGTGCCTCCAGGTTGCGAGGACAAGAACAGGTACTCCAACGTGCTGCCGCTGCCGGAGACCAGAGTCCCGCTGTGCAGGATTGGAAACGACCCCACCACTGAATACATCAACGCTAATTATATTACGGGTCCAGGTAATATAAAGAACTACTACATCGCGTGCCAGGCTCCCCTCGCCAACACCGTTGGAGACTTCTGGAGAATGATTTGGGAACAGAACTCAAGACTTGTAGTCATGCTCACTGAATATATGGAGAATGGAGTGGAAAAGTGTTACGAGTATCTTCCACCATCAGAGGTGTCCGATAACAAGAGGTCCTTCGGGGATTTCAAGATAATCCTGAAGAAACGCGAGCAAAAAGACAAATACGCCATCTCCAGCGTTCAACTGATCAACATGTCGACCAGAACGTGGCGGGAAATAATCCACCTGTGGTACTTCTGGCCGGCGAAAGGAGTTCCAGACGACTACGATTCAATATTAGACTTCCTGTCCGAAATGAGGAATTATATGAAGATCTCGCAAACGGCGAAGGAATATGACGAGGAAGGCGTGGAAGTCATCTACGAAGACCAGAACCGTTCATCGTTCAGCAACCTAACCAAGTTGCGGAGCGATGACAACGGCTCCGGAAACGGAGTGAACGTGTACTCACCGGCCAAGGCCGAGGAGATGATGAGGAGGCACACCAACGGAACCTTGGGCCGAATGAAAGCGGCTTCCGAAGTCGAAGGCGTCCGTCCGTGCGTGGTGACGTGCGCGTCGGGCGCGGGTCGCTCGGCGGTGCTGGTCGCGCTGGACGTGTGCGCGCGCGCGCTGGCGGCGGGCCGCGCCGACGTGCCGCGCGCCGTGCGACACCTGCGCGCCCAGCGACCGCACTCGCTCTCCAACAGACACCACTATATCCTGCTCTATAAGGTGCTTAGCGAATATGGGAACAAGTTGACGGGCGGCGGAATCGACACTATCTGA
Protein
MTVSSALSQSTQSTANDEKLSRYNGLNQTSWIRSSDASNELNPKDNSEEHTDKNAKYKDRGRIKFHSLFKSTTASPLRKASSTESGDFVIVTPATEIKKTSRYTEVAKSAKKDNSPVSSTTPVAVKNGEESIEEYDDEDEEEERETLQKFSSNKFHESFFKIPSFGDDNNESSNNKVREDFSSPSYGFSSFFPKETSFGYGHNDNKNNFKSESFFDFDSDLTTPKNDFFDKKYQEISGSIIKKLETIKAKSPPPNITNVHKIVKENVGLERLGNNTPTNKSTVFIKNTKEIRVLDNEGAGSANEQLSDVHGTSIYYEMSVLSTETYAINHSNDDDCDNDTLPAEPTMSTSSEEELASIKTTTPTPIQVSTRPPFPDPTVENVSTLSSNYVPISTALPIFNSIIPVSTQNYISSTERVTRVFSSSFSRNRNYSKRLNLNGVNDSPNSVTLKTGTSTHKPLTRKFHYTTQRVRPVWMAPKRNVTKPAYQRLTTPTTIYSEHFNIKDKYTTTPRPRPSNKVTLTTVTSEIDPVLQSDVGGFKKVVHSHSISDNTIPSLWKRGSTKYRTSTATSDEVSNVSEMEIPPTSIVWALASLRSPSRNSTGYKTDDENELQKVGELLEKNETKTSTTTIATTMEISEDITNKTITEVEQNKLPWQSVQASTPPINDMQNETIIENKTERVTAESNISVQSSPEPSTTETDTTKSTTKAFKPAWVSATTETEQNMTEKDNLVIKRGFESITKLPSGITTPQDETEDLNQITTKTPKTRDDFEITTIRFSYVPTQTTETPDDSEYELTTFNWRPVFPTRTQATTIKDEPITTYRPKFITTTELLEESTTVEDTTPPVIELSSHIIENATEDIVQTTDINEPTIVSTKAIEINKATTIPNKITENIKTTTISATTEINEPTTIKTTTTEINKPYSMKTKITEFIEPTVVSTTTTEINEPYTTPTTQVPTTKQITTETSTTTTTEAATEDVSETLPITVTKTITTSTTTSPTTTMTTTPLEDTTTIIIEVVTEINTEKERTITAPMPTETPKPTAEYTSENIDDNEVIDQTTAPSMPSVAPTIVVSTSKVPIWTTTTAAIEYTTEAVETSQENGKIVSSTDSEMETTRAVSDLEDLTSYAGEMTTEASSRVLNSEDSGTGVAVAIAVSTIGVIALVLLIALLLVVRRRGRRGIYAQRCTPVSLDAYSLDSVSVGHRKGNQRLRASKRSYGNPAYDDEVTSHPMQYSALASFAMDIESITAEFVEIPSVSVRPEEVPPGCEDKNRYSNVLPLPETRVPLCRIGNDPTTEYINANYITGPGNIKNYYIACQAPLANTVGDFWRMIWEQNSRLVVMLTEYMENGVEKCYEYLPPSEVSDNKRSFGDFKIILKKREQKDKYAISSVQLINMSTRTWREIIHLWYFWPAKGVPDDYDSILDFLSEMRNYMKISQTAKEYDEEGVEVIYEDQNRSSFSNLTKLRSDDNGSGNGVNVYSPAKAEEMMRRHTNGTLGRMKAASEVEGVRPCVVTCASGAGRSAVLVALDVCARALAAGRADVPRAVRHLRAQRPHSLSNRHHYILLYKVLSEYGNKLTGGGIDTI

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
2C7S     E-value=1.56534e-24,     Score=285

Ontologies

KEGG
101737535    no KO assigned | (RefSeq) probable GPI-anchored adhesin-like protein PGA55
GO
GO:0016311   GO:0016791   GO:0004725   GO:0006470   GO:0005524   GO:0003909   GO:0051103   GO:0000049   GO:0005975   GO:0004553  

Topology

Length:
1584
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.84687
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  1149
TMhelix
1150  -  1172
inside
1173  -  1584
 
 

Population Genetic Test Statistics

Pi
199.408738
Theta
151.326416
Tajima's D
1.308599
CLR
0.935472
CSRT
0.737663116844158
Interpretation
Uncertain
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