Silkworm Genome Informatics Database

Gene

KWMTBOMO12363

Pre Gene Modal

BGIBMGA012372

Annotation

PREDICTED:_uncharacterized_protein_LOC103572275_[Microplitis_demolitor]

Location

Bomo_Chr21(-):1246175-1249776 View in EpiBrowser

Full name

ATP-dependent DNA helicase

Location in the cell

Nuclear Reliability : 1.815 PlasmaMembrane Reliability : 1.657

CDS

ATGCCAAGAAAACGCAAAGGGGCTGATTTGAGCCGCAGTACAAGTAAAGCTCGAAACTTGCGAAATAGCAGATCCGAAAGAACAGAAGAACAAATCCAGCAACAAAATACTGATGCACGTGTTAGAATGGCGCAATTGCATCAAGAAGAGCTAGAAGATACACGAGCTGAACGCAATGAAGTCAGAAGATTAGAACAACGACAATCACGCCGTTTCACAGTCAATAGACGAAGAACAAATGACCAACAACGACAACAGGTACATCGAGCATTTATATCTGATTCATTCCTGCGTCTAGCATTCCAGTATGAGCCCGATATTGAATATCATGCTCATTCAAAAGTGGTAATTGGTGCTATGGACAAGGAATGTCCGCATTGTCATGCTCTGAAATTCAAAAATGAGCCAGCTGGGATGTGTTGCGCGTCAGGAAAAGTGCAACTACCTGAAATTGAAACACCACCTGAACCATTGAACGGCTTACTTATCGGCACGGATCCAGATTCTAACGTGTTCCTGAAGTCAATTCGAAGATTCAATTCATGCTTTCAAATGACATCGTTCGGAGCAACAGAAATAGTTCGAAATACTAATGCAAATGGTCAACAATTCAATTCTACATTCAAAATCAGAGGCCAAGTTTATCATAAAATTGGCTCACTGCTGCCAATGCCAAACGAACCACATGAATTCTTACAAATCTACTTTATGGGCGGCGAGGATTCCGGAAGCGCACTTGCCAATCGCGTGAATGCACGTTGTGATTATAATAACCTTGATTCACTTTATGCCAGGCGCATCGTCAGCGAGCTAGATGCTCTTTTGAACGAGCACAACGAGTTGTTGAATATATTCAAATCACATATGCACCAATTACAAAGCGATAATCACGCTATCGTCATTAATCCTGATAAAACACCAGCTGGAGAGCATATTCGTAGATTCAATGCACCCGTTGTTGATGATGTTGCTGGAATCATGGTTGGCGATTGTACAGCTGCACGAGAAATTGTGATTCGTAGAAGAAATAATAATCTTCAGTTCATTGCTGACACACATCGTTTATATGACGCTCTCCAATATCCGCTAATATTCTGGAAGGGACAAGACGGATATTGCATAAACATAAAACAACGAGATCCCGTATCAGGAGCTGAAACAAACAAGAACGTTAGCTCAAAGGATTATTATGCGTACCGATTAATGATTAGACGTGGACTGGACAACGTCATTTTACGATGTCGTGAGCTTTGTCAACAATTCATGGTCGACATGTACGCGAAGATTGAGAGCGAACGACTACGATATTTACGATACAATCAACAAAAGCTGCGCGCGGAAGAGTACATTCATTTGCGAGACGCTATCAACAACAACGCCGACGTCGCCGAAATTGGTAACCATGTCATTTTACCATCATCGTACGTAGGCAGTCCACGTCATATGCAAGAATATATACAGGATGCTCTGACTTTCGTGCGCGAATATGGACGACCATGTTTATTTATCACGTTCACATGTAATCCAAAATGGCCAGAGATTACATCTTTGCTACTGCCTGGCCAAAATGCAATACATCGCCATGACATTACAGCACGTGTGTTCAGACAAAAGTTGAAGTCTTTAATAAGTTTCATTACTAAATCACATGTATTTGGTCCCACACGTTGCTGGATGTATTCGGTTGAGTGGCAAAAGCGAGGATTACCTCATGCACACATTTTGGTTTGGTTCATCGACAAAATCCGTCCTGAAGAAATCGATAGTATCATTTCTGCGGAAATTCCAGATCCATCCACTGACCAACTGCTGTTTGATGTTGTTACAACAAACATGATTCATGGTCCATGTGTGAATAAAAACGATGAAATAACGCTCTACCAAATTGGTCGGTACATCAGCTCTAATGAAGCTGCTTGGCGTATCTTTGGTTTTCCAATTCATGAACGGGATCCAGCAGTTATTCAGTTAGCCATCCATCTTGAAAACGGTCAGCGTGTATTTTTCACGAACGAGACAGCGATTGATCGTGCAATAAATCCACCTAAAACTACACTCACTGCATTTTTTGAATTGTGTAATCGTGCGGATGAATTTGGTGCCTTTGCACGAACATTACTCTATTCACAAGTACCACGCTATTTCACATGGACTCAAACAAAAACATGGATGCCCCGCAAGCAAGGCTCACCAGTTGCTGCATGTCTCAATTTATTTAATTCAAACGCCTTGGGGCGATTATTTACAGTCAATCCAAGACACACGGAGTGCTTTTATCTTCGACTGTTGTTGGTTAATGTTACTGGCCCATTATCATTTCAAGATATACGTAAAGTGAATGGGCAACAATATCCAACGTATAAAGATGCATGTCTTGCACTCGGCTTGCTGGAAGACGACAACCAGTGGGAATGCATGCTTGCTGAAGCTGCATTGAACTGTACAGCAATACAAATTCGTCTACTATTCGCTATAGTGTTGACTACATGTTTCCCAGCCCGAGCACAGATATTATGGGAAAATCACAAAGATTCAATGACTGATGATATATTGCATCAACACCGTATACGGTGCCACGATCTAACCATAACATTCAGCGACGAAATGTACAATGAAGCATTGATTGCTATTGAGGATCTTTGCATTGTCATTGCCAACTTACCACTTAGTAATTTCGGTATGAATTCGCCAAATCGAACTGCATCTGATTTAATGAATACTGAAATGAATCGTGAACTGCAGTACAGTACTGTAGAAATGGCAGCGATTGTTGCCCGCAATGTCCCACTAATGAATGAGGAACAAAGAACCATTTATGATCGCATTATGCTCGCAGTTTCAGCTGGACAAGGTGGGTTCTTCTTTTTGGATGCACCGGGTGGAACTGGCAAAACATTCGTTATTTCGCTAATTCTTGCTGAAATACGATCAAATAATGGCATCGCATTGGCCGTTGCATCATCGGGCATTGCAGCAACTTTATTGGATGGAGAATAA

Protein

MPRKRKGADLSRSTSKARNLRNSRSERTEEQIQQQNTDARVRMAQLHQEELEDTRAERNEVRRLEQRQSRRFTVNRRRTNDQQRQQVHRAFISDSFLRLAFQYEPDIEYHAHSKVVIGAMDKECPHCHALKFKNEPAGMCCASGKVQLPEIETPPEPLNGLLIGTDPDSNVFLKSIRRFNSCFQMTSFGATEIVRNTNANGQQFNSTFKIRGQVYHKIGSLLPMPNEPHEFLQIYFMGGEDSGSALANRVNARCDYNNLDSLYARRIVSELDALLNEHNELLNIFKSHMHQLQSDNHAIVINPDKTPAGEHIRRFNAPVVDDVAGIMVGDCTAAREIVIRRRNNNLQFIADTHRLYDALQYPLIFWKGQDGYCINIKQRDPVSGAETNKNVSSKDYYAYRLMIRRGLDNVILRCRELCQQFMVDMYAKIESERLRYLRYNQQKLRAEEYIHLRDAINNNADVAEIGNHVILPSSYVGSPRHMQEYIQDALTFVREYGRPCLFITFTCNPKWPEITSLLLPGQNAIHRHDITARVFRQKLKSLISFITKSHVFGPTRCWMYSVEWQKRGLPHAHILVWFIDKIRPEEIDSIISAEIPDPSTDQLLFDVVTTNMIHGPCVNKNDEITLYQIGRYISSNEAAWRIFGFPIHERDPAVIQLAIHLENGQRVFFTNETAIDRAINPPKTTLTAFFELCNRADEFGAFARTLLYSQVPRYFTWTQTKTWMPRKQGSPVAACLNLFNSNALGRLFTVNPRHTECFYLRLLLVNVTGPLSFQDIRKVNGQQYPTYKDACLALGLLEDDNQWECMLAEAALNCTAIQIRLLFAIVLTTCFPARAQILWENHKDSMTDDILHQHRIRCHDLTITFSDEMYNEALIAIEDLCIVIANLPLSNFGMNSPNRTASDLMNTEMNRELQYSTVEMAAIVARNVPLMNEEQRTIYDRIMLAVSAGQGGFFFLDAPGGTGKTFVISLILAEIRSNNGIALAVASSGIAATLLDGE

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Uniprot

J9LHY8 A0A3S2NIC2 A0A0D6L8U7 A0A016SC70 A0A3S2LQP6 J9LFV8 + More
A0A2N9EYQ4 A0A2N9GC71 A0A392LX22 A0A2K3NWY8 A0A0D3D4V7 J3SIC4 A0A0D3BLK7 A0A267GJF9 A0A267DB74 A0A016SIC2 A0A368FK51 A0A0C4F264

EC Number

3.6.4.12

Pubmed

25730766 29922311 24500806 28382043 24916971

EMBL

ABLF02032513 ABLF02032521 RSAL01001639 RVE40746.1 KE125664 EPB67478.1 + More
JARK01001590 EYB87952.1 RSAL01000340 RVE42412.1 ABLF02012908 ABLF02042833 OIVN01000670 SPC83866.1 OIVN01001709 SPC96851.1 LXQA010000149 MCH79500.1 ASHM01001951 PNY07550.1 JN606071 AFK13834.1 NIVC01000291 PAA86185.1 NIVC01004811 PAA46541.1 JARK01001557 EYB90395.1 JOJR01001364 RCN31185.1 ADAS01008033

Proteomes

UP000007819 UP000283053 UP000024635 UP000236291 UP000032141 UP000215902 + More
UP000252519

Pfam

PF05970   PIF1        + More
PF14214   Helitron_like_N
PF00931   NB-ARC
PF02721   DUF223
PF02689   Herpes_Helicase

Interpro

IPR027417   P-loop_NTPase        + More
IPR025476   Helitron_helicase-like
IPR010285   DNA_helicase_pif1-like
IPR003593   AAA+_ATPase
IPR002182   NB-ARC
IPR013955   Rep_factor-A_C
IPR003871   DUF223
IPR012340   NA-bd_OB-fold
IPR003840   DNA_helicase

SUPFAM

SSF52540 SSF52540 + More
SSF50249 SSF50249

CDD

cd04476 RPA1_DBD_C

ProteinModelPortal

J9LHY8 A0A3S2NIC2 A0A0D6L8U7 A0A016SC70 A0A3S2LQP6 J9LFV8 + More
A0A2N9EYQ4 A0A2N9GC71 A0A392LX22 A0A2K3NWY8 A0A0D3D4V7 J3SIC4 A0A0D3BLK7 A0A267GJF9 A0A267DB74 A0A016SIC2 A0A368FK51 A0A0C4F264

KEGG

105841528 no KO assigned | (RefSeq) uncharacterized LOC105841528

GO

GO:0006281 GO:0005524 GO:0003678 GO:0006310 GO:0000723 GO:0004386 GO:0016021 GO:0043531 GO:0005509 GO:0003909 GO:0051103 GO:0000049 GO:0005975 GO:0004553

Length:

998

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.38349

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 998

Pi

21.330274

Theta

160.124958

Tajima's D

1.825752

CLR

0.051803

CSRT

0.855507224638768

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics