SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12357  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012376
Annotation
PREDICTED:_uncharacterized_protein_LOC101858236_[Aplysia_californica]
Full name
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]      
Alternative Name
tRNA-dihydrouridine synthase 3
Location in the cell
Nuclear   Reliability : 4.3
 

Sequence

CDS
ATGACTGAAATAGAAGAATTAATTTCGGAGGTGGAAAGAAATCCATGTCTATGGAACGTCGGTTGTAGTAATTATCAAAATAAAACACAAAGGGACTTGGCCTGGGAAGATATATGCAAAAGAATCATTCCACATTGGAATGATTTGAACATGGAAGATAGAAAGCAAATTAGAGAATATAAAAAGAAACAGTGGAACAATGTAAGAGATGGTTACAGAAAGTACCTAAATAGAAATAAAAACACTCCGGTGCCCAAAAAAAAATTCATATACGGGGATGATCTACAGTTCTTACTACCCATCTTGAAAAACAATAAATCTCGTGAACGCAACCTTCCATCAGAATCGCATGATGATAATGACGAAGATAATGAAGCTTTTGAAATCGAACTAAAACCATACACTGAAGACAGTTACGAGGATGACGAAGAAGAGGAAACTAAATCATTTCGTAAATGCAGAACTACTGAGAGGAGGAATAAAGCTCAACAAAAATACGAAAATGACGAAATACCGTATCAAATTTTAAATATTACAAAACAGAAAACTGACGACGAAGACAACTACCAAGATGTGGATTCACAGTTCTTGCTGAGCTTCCGCGATTATATGAAGGGAATGACAAGATCGCAGAAGTTAAATTTTAAGTTAGGCATGATTCAACTTATACAGCATGTGACTGAAGAAAAAGTGAGCGATCCGTTTAGTGAGTGTTGA
Protein
MTEIEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNRNKNTPVPKKKFIYGDDLQFLLPILKNNKSRERNLPSESHDDNDEDNEAFEIELKPYTEDSYEDDEEEETKSFRKCRTTERRNKAQQKYENDEIPYQILNITKQKTDDEDNYQDVDSQFLLSFRDYMKGMTRSQKLNFKLGMIQLIQHVTEEKVSDPFSEC

Summary

Cofactor
FMN
Similarity
Belongs to the dus family. Dus3 subfamily.
EC Number
1.3.1.-
Pfam
PF10545   MADF_DNA_bdg        + More
PF02944   BESS
PF13499   EF-hand_7
PF01093   Clusterin
PF01207   Dus
Interpro
IPR039353   TF_Adf1        + More
IPR006578   MADF-dom       
IPR004210   BESS_motif       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR000753   Clusterin-like       
IPR018517   tRNA_hU_synthase_CS       
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       
IPR013785   Aldolase_TIM       
IPR000571   Znf_CCCH       
SUPFAM
SSF47473   SSF47473       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
238
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00015
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02091
outside
1  -  238
 
 

Population Genetic Test Statistics

Pi
199.459218
Theta
156.765111
Tajima's D
0.865567
CLR
0
CSRT
0.622218889055547
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26385322 MTEIEDLISEVEKNPCLWNVGCSNYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQISVCTPIYEESKKELYFSFEKDHLYDTELTRGRLETNRERNMPSELHEDSYEDNETIEIEVRPQTEDEDDEDERKPFRKYATSERQTKAQQKYTPDEIPYQILNITKQNTDDEVSYQDVDSQFLLSFRDDMNAMSRSQKLKFKL 100.00 6e-160
26385322 MCDIELLISLVKQHQCIWNVDHEDYHNPYNKEQAWKEICKEMCENWDKASPMERKRACLECKKKWNNVRGNYQKDVIKRHLLGPKAKKVKKYYHADALSFLEPIILKNKTEFETVDCGTAEVSTETDEEDHTEPVEQKCIPIDDTTTELSEDTSLYPVIKIIEPKLETDEDTMFLLSFRSHMKEMTQRQKLNFKTAMLKL 100.00 6e-160
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