Gene

KWMTBOMO12357  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012376

Annotation

PREDICTED:_uncharacterized_protein_LOC101858236_[Aplysia_californica]

Location

Bomo_Chr21(-):1054888-1057096      View in EpiBrowser

Full name

tRNA-dihydrouridine(47) synthase [NAD(P)(+)]      

Alternative Name

tRNA-dihydrouridine synthase 3

Location in the cell

Nuclear   Reliability : 4.3

CDS

ATGACTGAAATAGAAGAATTAATTTCGGAGGTGGAAAGAAATCCATGTCTATGGAACGTCGGTTGTAGTAATTATCAAAATAAAACACAAAGGGACTTGGCCTGGGAAGATATATGCAAAAGAATCATTCCACATTGGAATGATTTGAACATGGAAGATAGAAAGCAAATTAGAGAATATAAAAAGAAACAGTGGAACAATGTAAGAGATGGTTACAGAAAGTACCTAAATAGAAATAAAAACACTCCGGTGCCCAAAAAAAAATTCATATACGGGGATGATCTACAGTTCTTACTACCCATCTTGAAAAACAATAAATCTCGTGAACGCAACCTTCCATCAGAATCGCATGATGATAATGACGAAGATAATGAAGCTTTTGAAATCGAACTAAAACCATACACTGAAGACAGTTACGAGGATGACGAAGAAGAGGAAACTAAATCATTTCGTAAATGCAGAACTACTGAGAGGAGGAATAAAGCTCAACAAAAATACGAAAATGACGAAATACCGTATCAAATTTTAAATATTACAAAACAGAAAACTGACGACGAAGACAACTACCAAGATGTGGATTCACAGTTCTTGCTGAGCTTCCGCGATTATATGAAGGGAATGACAAGATCGCAGAAGTTAAATTTTAAGTTAGGCATGATTCAACTTATACAGCATGTGACTGAAGAAAAAGTGAGCGATCCGTTTAGTGAGTGTTGA

Protein

MTEIEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNRNKNTPVPKKKFIYGDDLQFLLPILKNNKSRERNLPSESHDDNDEDNEAFEIELKPYTEDSYEDDEEEETKSFRKCRTTERRNKAQQKYENDEIPYQILNITKQKTDDEDNYQDVDSQFLLSFRDYMKGMTRSQKLNFKLGMIQLIQHVTEEKVSDPFSEC

Cofactor

FMN

Similarity

Belongs to the dus family. Dus3 subfamily.

Uniprot

H9JS66   A0A3S2NHN2   H9J8Q4   A0A2J7PBC8   A0A437B0K8   A0A195DC77   + More
A0A195BR61   A0A195F3Q1   A0A151XC39   F4WMC5   A0A158P282   A0A067RA73   A0A0T6BB68   A0A026WD33   A0A0J7L3L1   A0A151IFB9   A0A2S2PS33   A0A2S2QKM5   J9KU42   K7IX93   A0A0N0BFW2   E2AWC0   A0A444T9D1   A0A1E1WMV5   A0A0P4WIC9   A0A3P7E1U8   J9EDY0   A0A0N5D5I8   A0A1B6JUW1   A0A0R3R2M1   A0A212FPD0   A0A3S2NB70   A0A0H5S1L7   A0A1B6FZ56   A0A194PPX0   A0A0N4TX01   A0A194R0F2   A0A023EWP8   J9KBQ0  

EC Number

1.3.1.-

Pubmed

19121390    21719571    21347285    24845553    24508170    30249741    + More
20075255    20798317    26850696    22118469    17885136    26354079    25474469   

EMBL

BABH01033119    RSAL01000035    RVE51328.1    BABH01030371    NEVH01027118    NEVH01016302    + More
NEVH01007440    PNF13628.1    PNF25815.1    PNF35690.1    RSAL01000224    RVE43986.1    KQ980989    KYN10515.1    KQ976418    KYM89451.1    KQ981855    KYN34807.1    KQ982315    KYQ57858.1    GL888217    EGI64769.1    ADTU01001164    KK852602    KDR20478.1    LJIG01002364    KRT84576.1    KK107261    QOIP01000012    EZA53972.1    RLU16330.1    LBMM01000937    KMQ97188.1    KQ977799    KYM99596.1    GGMR01019594    MBY32213.1    GGMS01009116    MBY78319.1    ABLF02030014    AAZX01000580    AAZX01000618    KQ435794    KOX73672.1    GL443280    EFN62280.1    SAUD01040394    SAUD01007315    RXG51670.1    RXG62280.1    GDQN01002878    JAT88176.1    GDRN01070949    JAI63786.1    UYWW01001533    VDM10647.1    ADBV01004300    EJW80661.1    UYYF01004606    VDN05797.1    GECU01004715    JAT02992.1    UZAG01019009    VDO41994.1    AGBW02003328    OWR55560.1    RSAL01000288    RVE42933.1    LN856534    CRZ22603.1    GECZ01014282    JAS55487.1    KQ459596    KPI95362.1    UZAD01013389    VDN94591.1    KQ460930    KPJ10725.1    GBBI01004947    JAC13765.1    ABLF02012823   

Proteomes

UP000005204    UP000283053    UP000235965    UP000078492    UP000078540    UP000078541    + More
UP000075809    UP000007755    UP000005205    UP000027135    UP000053097    UP000279307    UP000036403    UP000078542    UP000007819    UP000002358    UP000053105    UP000000311    UP000288706    UP000270924    UP000004810    UP000093561    UP000046394    UP000276776    UP000050602    UP000007151    UP000006672    UP000053268    UP000038020    UP000278627    UP000053240   

PRIDE

H9JS66    H9J8Q4   

Pfam

PF10545   MADF_DNA_bdg        + More
PF02944   BESS
PF13499   EF-hand_7
PF01093   Clusterin
PF01207   Dus

Interpro

IPR039353   TF_Adf1        + More
IPR006578   MADF-dom       
IPR004210   BESS_motif       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR000753   Clusterin-like       
IPR018517   tRNA_hU_synthase_CS       
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       
IPR013785   Aldolase_TIM       
IPR000571   Znf_CCCH       

SUPFAM

SSF47473   SSF47473       

Gene 3D

3.20.20.70    

CDD

cd00051  EFh
cd02801  DUS_like_FMN

ProteinModelPortal

H9JS66   A0A3S2NHN2   H9J8Q4   A0A2J7PBC8   A0A437B0K8   A0A195DC77   + More
A0A195BR61   A0A195F3Q1   A0A151XC39   F4WMC5   A0A158P282   A0A067RA73   A0A0T6BB68   A0A026WD33   A0A0J7L3L1   A0A151IFB9   A0A2S2PS33   A0A2S2QKM5   J9KU42   K7IX93   A0A0N0BFW2   E2AWC0   A0A444T9D1   A0A1E1WMV5   A0A0P4WIC9   A0A3P7E1U8   J9EDY0   A0A0N5D5I8   A0A1B6JUW1   A0A0R3R2M1   A0A212FPD0   A0A3S2NB70   A0A0H5S1L7   A0A1B6FZ56   A0A194PPX0   A0A0N4TX01   A0A194R0F2   A0A023EWP8   J9KBQ0  

KEGG

101746471    no KO assigned | (RefSeq) uncharacterized LOC101746471

GO

GO:0003677   GO:0005634   GO:0005509   GO:0017150   GO:0050660   GO:0046872   GO:0032580   GO:0008270   GO:0005524   GO:0003909   GO:0051103   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR12243  

Subcellular location

Nucleus  

Length:

238

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00015

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02091

outside

1  -  238

 

 

Pi

199.459218

Theta

156.765111

Tajima's D

0.865567

CLR

0

CSRT

0.622218889055547

Interpretation

Uncertain